LOCUS       NM_001004447            2442 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Rattus norvegicus spermatogenesis associated 21 (Spata21), mRNA.
ACCESSION   NM_001004447 XM_345595
VERSION     NM_001004447.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2442)
  AUTHORS   Iida,H., Yamashita,H., Doiguchi,M. and Kaneko,T.
  TITLE     Molecular cloning of rat Spergen-3, a spermatogenic cell-specific
            gene-3, encoding a novel 75-kDa protein bearing EF-hand motifs
  JOURNAL   J Androl 25 (6), 885-892 (2004)
   PUBMED   15477360
  REMARK    GeneRIF: Potential role of Spergen-3, a new member of EF-hand
            family, in differentiation of haploid spermatids in testis.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AB168097.1.
            
            On Sep 17, 2004 this sequence version replaced XM_345595.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB168097.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2442
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..2442
                     /gene="Spata21"
                     /gene_synonym="Spergen3"
                     /note="spermatogenesis associated 21"
                     /db_xref="GeneID:366491"
                     /db_xref="RGD:1302954"
     exon            1..86
                     /gene="Spata21"
                     /gene_synonym="Spergen3"
                     /inference="alignment:Splign:2.1.0"
     exon            87..220
                     /gene="Spata21"
                     /gene_synonym="Spergen3"
                     /inference="alignment:Splign:2.1.0"
     exon            221..390
                     /gene="Spata21"
                     /gene_synonym="Spergen3"
                     /inference="alignment:Splign:2.1.0"
     CDS             265..2322
                     /gene="Spata21"
                     /gene_synonym="Spergen3"
                     /note="spergen-3; spermatogenic cell-specific gene 3
                     protein"
                     /codon_start=1
                     /product="spermatogenesis-associated protein 21"
                     /protein_id="NP_001004447.1"
                     /db_xref="GeneID:366491"
                     /db_xref="RGD:1302954"
                     /translation="MENRNTHTHPENKAEAPTVQSSSGLSSTKKKTDLEAAVAAGQNG
                     RADATERDSRKKPAAPRGPEKEPRHTASSQERSGEPQTQEQRPSARSKTTQDGPRELQ
                     TGQEQARPSGDFVASEGRPQPAMQTKDQQKRWQSAEAKDVQSTESCQGNTDHDLGKPC
                     TSDSRSHPQKTNSLSEGGRPQARLQEPMPAPSSGTHKDNPQEAVPPKPKVTAEEKKAP
                     PVLPTVPRTHKDRGEAVESKASPRPPPPPPSPPPPPPPEERDVEKKELGQGQKQRQPA
                     LAAAGTQGPGNFRRGFMKCLLEVEEQEEATHRRTLKSRALTARRSPKTVTSVPTSGPV
                     NSSVPPLPPTLHEPSTSAPATVPSWVKPPAPGQAPIPMGTPSSVLPTPAQDQSWRWPE
                     LLPQGNERNLNYAKTRQESEEHGLFKLYQNWEERTEEHLTLKQEEAFRSYFDIFNGPG
                     EVDARSLKNILLLIGFTFTPAQVEEALMSADVNGDGHVDFKDFLAVMTDTKRFFCSVE
                     QNVLMDMSPPNPYTLFFEILSLLVEMLALPEVALEEITNYYQKKLKEGSSKAREMETA
                     MGGIRQRKKIPYSSQQVENLEVPERRVLRILSRLKQQNYAANLQSPYAQVPCIPLCPR
                     LDKKAVRRKQASHNHSVLDQCVPTSLGPDLHGFFLQPGQQGSREHSSDSRKWLSSVPA
                     RTH"
     exon            391..539
                     /gene="Spata21"
                     /gene_synonym="Spergen3"
                     /inference="alignment:Splign:2.1.0"
     exon            540..711
                     /gene="Spata21"
                     /gene_synonym="Spergen3"
                     /inference="alignment:Splign:2.1.0"
     exon            712..956
                     /gene="Spata21"
                     /gene_synonym="Spergen3"
                     /inference="alignment:Splign:2.1.0"
     exon            957..1032
                     /gene="Spata21"
                     /gene_synonym="Spergen3"
                     /inference="alignment:Splign:2.1.0"
     exon            1033..1487
                     /gene="Spata21"
                     /gene_synonym="Spergen3"
                     /inference="alignment:Splign:2.1.0"
     exon            1488..1576
                     /gene="Spata21"
                     /gene_synonym="Spergen3"
                     /inference="alignment:Splign:2.1.0"
     exon            1577..1714
                     /gene="Spata21"
                     /gene_synonym="Spergen3"
                     /inference="alignment:Splign:2.1.0"
     exon            1715..1786
                     /gene="Spata21"
                     /gene_synonym="Spergen3"
                     /inference="alignment:Splign:2.1.0"
     exon            1787..1904
                     /gene="Spata21"
                     /gene_synonym="Spergen3"
                     /inference="alignment:Splign:2.1.0"
     exon            1905..2080
                     /gene="Spata21"
                     /gene_synonym="Spergen3"
                     /inference="alignment:Splign:2.1.0"
     exon            2081..2264
                     /gene="Spata21"
                     /gene_synonym="Spergen3"
                     /inference="alignment:Splign:2.1.0"
     exon            2265..2431
                     /gene="Spata21"
                     /gene_synonym="Spergen3"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      2431
                     /gene="Spata21"
                     /gene_synonym="Spergen3"
ORIGIN      
        1 acgttacaga ccacagggga agaaggagaa actcagtcac ggccacaact gcttgtgcca
       61 tttgagagcc taagtacttc ccacaggaag agctgagcca tacctcacag ggctgtgaag
      121 agaatacagc tcaagaactt ccagcagaga ggaggtcatt tccatgggca gtggctggct
      181 tgccgtggct tagaaaggaa aaggtcccga gatcctccag aagcttatgt ccctcgattt
      241 gggaatcttg ctggctccag aacaatggaa aacagaaaca cccacacaca cccagagaac
      301 aaggcggagg ctccaacagt ccaatcaagt tctggcctga gttccaccaa aaagaagaca
      361 gatctggagg ccgctgtcgc agccggtcag aatggacgtg cagatgccac tgaaagggac
      421 agcagaaaga agcctgcagc tcccagagga ccagagaagg aaccccgaca cacagcgtca
      481 tcccaggaga ggtcagggga gcctcagacc caggagcaga ggccctcagc aagatcaaag
      541 acaacccagg atgggccaag ggagctgcaa actggccagg agcaagcacg gcctagtggg
      601 gattttgtgg cctctgaagg gcggccacag ccagccatgc agaccaagga ccagcagaag
      661 agatggcaga gtgccgaggc caaagacgtt caatctactg agagctgcca gggaaacaca
      721 gatcatgatc tggggaagcc atgcacctca gatagcagga gtcacccaca gaagactaac
      781 tccctcagtg aaggaggccg cccacaggcc aggctgcagg agcctatgcc agcacctagc
      841 tcagggactc acaaggacaa cccccaggag gcagtgcccc ccaagcccaa ggtgactgca
      901 gaggagaaga aggcccctcc cgttttgcca actgtacctc gaacacacaa agacagaggt
      961 gaggctgtgg aaagcaaagc atcaccgagg cctcctcctc ctcctccttc tcctcctcct
     1021 cctcctcctc cagaggagag agatgttgag aagaaggagc tgggccaagg gcagaagcaa
     1081 cggcagccgg ccttggcagc tgcaggcacc cagggtcctg ggaacttccg acggggtttc
     1141 atgaagtgcc tactggaggt ggaagagcag gaggaagcca cccacagaag gactctgaag
     1201 tcccgggccc tgacagccag gaggtccccc aagactgtga cttctgtgcc cacctcaggc
     1261 cccgtcaaca gctctgttcc acccttacct ccgaccctgc atgaaccttc cacctcagct
     1321 ccagccactg tcccatcctg ggtcaaacca ccagcccctg ggcaagcccc catccctatg
     1381 gggaccccta gctcagtcct gccaactcct gcccaggacc agagctggag atggccagag
     1441 ctcttgcccc agggcaatga gagaaatctc aactatgcca agacacggca ggagtcggaa
     1501 gagcatggcc tcttcaaact gtatcagaac tgggaggaga ggactgagga gcaccttacc
     1561 ctgaagcagg aagaagcctt ccgaagctac ttcgatatct tcaacggtcc tggtgaggtg
     1621 gatgcgcgga gcctcaagaa catcttactc ctaatcggct tcacgtttac tccagcccag
     1681 gtggaagaag ctctgatgag tgctgatgtc aatggagatg gtcatgtgga tttcaaagac
     1741 tttttggctg tgatgacaga caccaagcgc ttcttctgct ctgtggaaca gaatgtcctg
     1801 atggatatgt cgcccccgaa tccttacaca ctgttctttg agatcctctc tttgctggtg
     1861 gaaatgctgg ccctgccaga ggtggcccta gaggagataa caaactacta ccagaagaag
     1921 ctgaaggaag gttcttccaa ggcccgagag atggaaacgg cgatgggcgg gattcggcaa
     1981 aggaagaaga ttccttacag ctctcagcaa gtagagaact tggaagtccc agaacgaagg
     2041 gtcctcagga tcctgagccg gctgaagcag cagaactatg ctgccaatct gcagagcccc
     2101 tatgcccagg taccctgcat cccactctgc ccgaggctgg acaagaaggc agtccgtcga
     2161 aagcaggcta gccataacca ttctgtgctg gatcagtgtg tccccacaag cctgggccct
     2221 gacctccatg gcttcttcct ccagccagga cagcaaggaa gcagggaaca cagctccgac
     2281 agtagaaagt ggcttagctc cgtgccagcc cgaacccact gatcctcggg aactctggct
     2341 ccacaagttc aaggcctgca gacagtaggc agggcctgga tttgggagct tgctttcatg
     2401 gcctggtaag ccaataaaca ccaagaacct caaaaaaaaa aa
//
