LOCUS       NM_001398667            1481 bp    mRNA    linear   ROD 29-APR-2024
DEFINITION  Rattus norvegicus spermatogenesis associated 17 (Spata17),
            transcript variant 1, mRNA.
ACCESSION   NM_001398667 XM_008769889
VERSION     NM_001398667.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1481)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000013.1.
            
            On Dec 21, 2021 this sequence version replaced XM_008769889.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360186.870238.1,
                                           SRR26360181.167208.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-82                JAXUCZ010000013.1  101316062-101316143 c
            83-172              JAXUCZ010000013.1  101285505-101285594 c
            173-254             JAXUCZ010000013.1  101284604-101284685 c
            255-305             JAXUCZ010000013.1  101275841-101275891 c
            306-409             JAXUCZ010000013.1  101266251-101266354 c
            410-533             JAXUCZ010000013.1  101221804-101221927 c
            534-740             JAXUCZ010000013.1  101202390-101202596 c
            741-889             JAXUCZ010000013.1  101197421-101197569 c
            890-1025            JAXUCZ010000013.1  101183426-101183561 c
            1026-1108           JAXUCZ010000013.1  101140981-101141063 c
            1109-1481           JAXUCZ010000013.1  101137415-101137787 c
FEATURES             Location/Qualifiers
     source          1..1481
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13q26"
     gene            1..1481
                     /gene="Spata17"
                     /gene_synonym="RGD1565282"
                     /note="spermatogenesis associated 17"
                     /db_xref="GeneID:498305"
                     /db_xref="RGD:1565282"
     exon            1..82
                     /gene="Spata17"
                     /gene_synonym="RGD1565282"
                     /inference="alignment:Splign:2.1.0"
     CDS             15..1106
                     /gene="Spata17"
                     /gene_synonym="RGD1565282"
                     /note="isoform 1 is encoded by transcript variant 1;
                     spermatogenesis-associated protein 17"
                     /codon_start=1
                     /product="spermatogenesis-associated protein 17 isoform 1"
                     /protein_id="NP_001385596.1"
                     /db_xref="GeneID:498305"
                     /db_xref="RGD:1565282"
                     /translation="MATLAKLLSRSDFLESQYYFRNRAVDSVRKFENDAAVAIQSWFR
                     GCQVRAYIRHLNRVVTIIQKWWRSYLGRKYYQLIVEAAYYTMKMNLYNEMAVRIQRRW
                     RGFRIRKYCFNYYYLKEYLRAVSETNDAIREALEEFAEMKEREERKILLELEEKQKDY
                     QARKTHYLLSTKQISGVYNSPFREHPDPWEVRLQKAKPLEHRKGSAMKSKTAHSLSSW
                     LACTSARSFPRSASLPPIDRKRCQGPFRDINEVLEQRYKPLEPTLRVSEPIDHLHVAR
                     EAFKQEERMRNVQDKMFLPFSSYHKKETYIPMIHTLSTYDSPSYGQKYFRCQDPKKWI
                     SDKDFQTVLPSFELFSKYGKLYSKAGQIV"
     exon            83..172
                     /gene="Spata17"
                     /gene_synonym="RGD1565282"
                     /inference="alignment:Splign:2.1.0"
     exon            173..254
                     /gene="Spata17"
                     /gene_synonym="RGD1565282"
                     /inference="alignment:Splign:2.1.0"
     exon            255..305
                     /gene="Spata17"
                     /gene_synonym="RGD1565282"
                     /inference="alignment:Splign:2.1.0"
     exon            306..409
                     /gene="Spata17"
                     /gene_synonym="RGD1565282"
                     /inference="alignment:Splign:2.1.0"
     exon            410..533
                     /gene="Spata17"
                     /gene_synonym="RGD1565282"
                     /inference="alignment:Splign:2.1.0"
     exon            534..740
                     /gene="Spata17"
                     /gene_synonym="RGD1565282"
                     /inference="alignment:Splign:2.1.0"
     exon            741..889
                     /gene="Spata17"
                     /gene_synonym="RGD1565282"
                     /inference="alignment:Splign:2.1.0"
     exon            890..1025
                     /gene="Spata17"
                     /gene_synonym="RGD1565282"
                     /inference="alignment:Splign:2.1.0"
     exon            1026..1108
                     /gene="Spata17"
                     /gene_synonym="RGD1565282"
                     /inference="alignment:Splign:2.1.0"
     exon            1109..1481
                     /gene="Spata17"
                     /gene_synonym="RGD1565282"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aggcctctga ggccatggct actttagcca agctgctgtc gcggtccgat tttctagaaa
       61 gtcagtacta ctttaggaac cgcgccgtgg actcagtcag gaaattcgag aatgatgcgg
      121 ctgtggcgat tcagagctgg ttccgagggt gccaagtacg ggcctatatc aggcacttga
      181 acagagtagt gacaattatt caaaagtggt ggagaagcta cttaggcaga aaatattatc
      241 aacttattgt tgaggcagcg tattatacta tgaagatgaa tctctacaat gaaatggctg
      301 tcaggattca gagacgatgg cgtggcttta ggatccggaa gtattgcttt aattactatt
      361 acttgaaaga atatttgaga gctgtttcag agaccaatga tgcaattagg gaggctttgg
      421 aggagttcgc agaaatgaaa gagagagaag agagaaagat tctcctggaa ctggaggaga
      481 agcagaaaga ttaccaagcc cgcaagacgc attacctgct cagcacaaag cagatttcag
      541 gtgtgtacaa ttcacctttc cgggagcatc ctgacccatg ggaggtgcgg ctgcagaagg
      601 caaagccttt ggagcaccgg aagggctctg ctatgaagag caagacggcc cacagtctca
      661 gcagctggct ggcatgcacc agtgcccgct ccttcccccg gtcagcaagt ctgccgccta
      721 ttgacaggaa gcggtgtcag gggcccttcc gagacatcaa tgaagtcttg gaacagcgtt
      781 acaagccttt ggagcctacc ctgagggtat cggaacctat cgaccacctt catgtggcca
      841 gagaggcatt caagcaagag gaacggatgc gcaacgtgca agacaagatg tttttgccat
      901 tttcttccta ccataaaaag gagacgtaca tcccaatgat acacacgttg agcacgtatg
      961 attctccctc ttatggacag aagtactttc gctgtcaaga cccgaagaag tggatctctg
     1021 acaaggattt tcagactgtt ctgccatcgt ttgaactctt ctcaaagtat ggaaagttgt
     1081 actcgaaagc tggacaaatt gtataaagag aacagaagac agaatgtgga aatgaggtga
     1141 gcatgaatgg aagatgccac tgcccagagc tccagactct agctccacag agaggaacaa
     1201 ccttgacatc agtcctttaa cctccgtgtg ctcctgagct ccagctctct tcctctgtcc
     1261 ttccctcccc tccttctctc cccctcctaa cctcaactca ctcttctgct ctcactttct
     1321 catctgtcag aagaaaaaaa atcaaaacca tttcgggctc attataaaac tttataaatg
     1381 aaaggaaaat acaaaagaag cttgtataaa aactattcgt atttaccagt gagccagatt
     1441 cactgtgatt caataaacta taacatttat tttacagctt a
//
