LOCUS       XM_008760900            2043 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus spermatogenesis associated 16
            (Spata16), transcript variant X4, mRNA.
ACCESSION   XM_008760900
VERSION     XM_008760900.3
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086020) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jul 30, 2024 this sequence was replaced by
            NM_001432377.1.
            
            On Jan 21, 2021 this sequence version replaced XM_008760900.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2043
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..2043
                     /gene="Spata16"
                     /note="spermatogenesis associated 16; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 36
                     long SRA reads, 3 Proteins"
                     /db_xref="GeneID:294932"
                     /db_xref="RGD:1563726"
     CDS             170..1885
                     /gene="Spata16"
                     /codon_start=1
                     /product="spermatogenesis-associated protein 16 isoform
                     X2"
                     /protein_id="XP_008759122.1"
                     /db_xref="GeneID:294932"
                     /db_xref="RGD:1563726"
                     /translation="MDSGKSRSLETTVKRVYRDLLLPKINTSKKMSTLTNSPNSLEGP
                     PEIKKSCGEKQAETSAERVKLTKSIKEKQSNELEKVALKRKVDSEEKLVGKKEAKVME
                     LDSQVLTTIPLPHIPLKNIMDVEMKLVYVDEEDVSYEFAQSYMCPGLQTTGQIATMMF
                     PTSTRDHATLPQIDKWLQVALKDASSCYRQKKYAVAAGQFRTALELCSKGAALGKPFE
                     AHAEDIASVASFIETKLVTCYLRMRKPDLALNHAHRSIVLNPAYFRNHLRQAAVFRCL
                     ERYSEAARSAMIADYMFWLCGGSEHCVSKLIKLYWQAMIEEAITRAEAFSVMYTPFAT
                     KIRADKIEKVKEVFTKTHPAYVECIYTDTQGFHVLPQTADWSCFPPQQYLLTLGFKNK
                     EDGKFLEKVSNRKLPTFTEHKTPFSPLTREDTVRHMEMVGKRILPILDFIRSTQLNGN
                     FHACSGVMEKLHYASLLSRLQRVKEQAQVINQAMAELATVPYLQDISQQEAELLQSLM
                     ADAMDTLEGRKNDKERVWNTIQKVGRIEDFLYQLEDSFLKTKKLRTARRQKTKMKRLQ
                     TVQQN"
     polyA_site      2043
                     /gene="Spata16"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 tctggtaaat gggcggggcc acgtggctgg tcggttttta ttcctaagag ccgtctgaag
       61 ctccacagta agttggcctg ggattgggac ggttgaatcg acagatgctg tagctggtag
      121 gcactcagca aatccgacct gaaccacaca ggagtctagg ggtggaccaa tggattctgg
      181 caagagtagg agtttggaga ctacagtgaa gagagtctat cgtgatctgc ttcttccaaa
      241 gataaataca agcaagaaaa tgtccacctt aacaaattcc cccaacagcc tggaagggcc
      301 acctgaaatc aagaagagct gtggggaaaa acaagctgaa acctccgctg agagagtaaa
      361 gctcacaaag agcatcaaag aaaagcaaag caacgagtta gagaaggtgg cccttaaacg
      421 gaaggttgac agtgaggaga agctagttgg aaagaaagag gcaaaggtaa tggaactgga
      481 cagccaggtg ctcaccacca tacctctgcc tcacatcccc ttaaagaaca taatggatgt
      541 ggaaatgaag ctggtctacg ttgacgaaga agatgtgagc tatgagtttg ctcagtccta
      601 catgtgccct gggcttcaaa caacaggcca aattgctacc atgatgttcc ctacaagtac
      661 ccgagatcat gccaccctgc cacagattga caaatggctt caggtagcct taaaggatgc
      721 cagctcttgc tatagacaga agaaatacgc agtggcagca ggacagttca ggacagcact
      781 tgagctttgc agcaaagggg cagctctggg gaaacccttt gaagcacacg ctgaagatat
      841 agcaagcgtg gctagtttca ttgagacgaa gctcgtcaca tgctacctac gtatgcggaa
      901 acctgacctc gccctgaacc acgcacacag gagtattgtt ttaaacccag cctatttccg
      961 aaaccatctt cgtcaggcag ccgtgtttag atgtctggag agatactcag aagctgcccg
     1021 gagtgccatg atcgcggact acatgttctg gctctgtgga ggaagcgagc actgtgtaag
     1081 caagctcatc aaactgtatt ggcaggccat gattgaagaa gccatcacca gagcggaagc
     1141 tttctcggtt atgtacacac cctttgccac aaaaataagg gctgataaaa tagaaaaggt
     1201 gaaagaggtg ttcacgaaaa ctcaccctgc ctatgtggag tgcatctaca cagataccca
     1261 agggttccat gtactgccac agacagctga ctggtcctgt tttcctcccc aacaatatct
     1321 gttgactctt ggattcaaaa acaaagaaga tggaaagttt ctggagaaag tgtcaaatag
     1381 gaagctgccc accttcacag aacataaaac tcccttctct ccactgacca gagaagatac
     1441 agtgagacac atggagatgg tggggaagcg aatcttgcca atcctggact ttatccgaag
     1501 cacgcaacta aatgggaatt tccatgcatg ctcaggtgtg atggagaagt tgcactatgc
     1561 cagcctcctc agccggctgc agagagtgaa ggagcaggcc caggtgatca atcaagcaat
     1621 ggcagagctg gcaaccgtcc cttatctgca ggacatcagt caacaggagg cagaattgct
     1681 gcagtcacta atggcagacg ccatggacac ccttgaagga aggaagaatg ataaggagcg
     1741 tgtgtggaat acgatccaaa aggtcggacg aatagaagac tttctgtacc aactagaaga
     1801 cagcttctta aaaactaaga aactgagaac tgctcgaagg cagaagacaa aaatgaagag
     1861 acttcaaact gtacagcaaa actagaaacc agggagcagg ctgactgggg tgtctagaga
     1921 agctggagta tattggctct gggcaacaaa ggccatcact aaagggctca ggcacacccc
     1981 ccttggcaaa gacagtctat atttcattac ttttcactgg taggaataaa ttttgtcaac
     2041 ata
//
