LOCUS       XM_039103807            7828 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus sperm associated antigen 17 (Spag17),
            transcript variant X1, mRNA.
ACCESSION   XM_039103807
VERSION     XM_039103807.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039103807.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7828
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7828
                     /gene="Spag17"
                     /note="sperm associated antigen 17; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 15 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:690746"
                     /db_xref="RGD:1592218"
     CDS             145..7104
                     /gene="Spag17"
                     /codon_start=1
                     /product="sperm-associated antigen 17 isoform X1"
                     /protein_id="XP_038959735.1"
                     /db_xref="GeneID:690746"
                     /db_xref="RGD:1592218"
                     /translation="MAPKKEKPTGSTSYKIWEPSLIAAHMNQNDWKASIAFVVGNRIE
                     DELPIHALNLAVQLPQRKLFSIVSWKDILQQINEIQALVGATTKKGKKTITGNLPLHY
                     EVLLAAKTIMDNGEKLTLPLVGKLLKFQLLQIKTKDQQRRENEKKMIEERAKSEKDKG
                     KGKSPKEKKAATVKAGKGKSKDQPEATVTVKKTTQLKRRGEDDDTKFYIDDEPDDGAQ
                     HYVIVVGFNHPQLLAIMTELGIPITSVIKISSENYEPLKTYLAAVMQQQEALLQPEDI
                     AAENLKRENDIKELEVFWKYLEPILNNEKPETNLLDVARLHYMVKTKHFPSDWSDYEQ
                     MLDLGTEIFENVACLMYDSLDWKRQHHHYLQSMQLINVPQVVSDKTMLEAIPIPEPPP
                     STAPAPGKKKAQYEESHAPPSVAFIITTEVDMRYYNDLLNPIPEEFISVPLILHCMLE
                     QVIATEEDLTPPSLVEPAPRADGLDYRIAAHIVSILPSLCLTEKEKKNLHEIFLTEGE
                     SESKTPPKGPLLLNYHDTYAHKKYALKDQKNFDPVQIEEEMQSKLPLWEFLQFPLPPP
                     WNSTKRLATIHELMHFCTNEVLSWNEVERAFKVFTFESLKLSEVDEAGRLKPTEVISE
                     TNVENVNIPWDNPARFAKLIRQRYIHRMSIQKAKPVLVETEHKDRTLFVNQNFAKAEQ
                     DAQGDENSPNCDHPAANNVMGSTSNSTRPRYSSDRQLTEKETSGSMCPQPESVEQIMD
                     TEIKGGAATKDDSLEKKPKKMVVEADIEDIKKTQQRSLMDWSFTEHFQPKVLLQVLQE
                     AHQQYRCVDSYYHTQDNSLLLVFHNPMNLHHLHCEYWNIALHSNVGFRNYLELVAKSI
                     EEWVIQEEAKYQEAKMAEELNRAKNELDLKATTAKTSASKIGGPKKSKSNKVSSKTEL
                     TDQEKDKEKEKEKEKDKIPFILEGSLKAWKEEQERLAEEERLKEEKKAEKKGKEAGRK
                     KGKDKADKEDTKSLKKKSSSKEKPKEEPSKSLEAIEEAVPLPEPEIVYPFRGYNMGDI
                     PIQISGTNYYLYPSDGGQIEVEKIRFERGPTFIKVKVKKDKHSFIIHLKDPKEIVKRE
                     KEEEHSEEEEEEEEEEEEEEEEENEQKEGKEENVKQNVEMKRTQIKKEAVSKFGSFSA
                     TLENGICLSISYYGSNGMAPEVMDSDLEAMMNIPSAMTATVVPSIVTVPQGKGKTKPK
                     GKEKHKDSFKEEELPKEEEKKNHSQEEVEPEIVIQETPYVPTFQNLNVSCPNGLLLTF
                     IGQESTDEESTWNLMIRQSYPQRLKHYEFYKAVMPPTEQEASRVVTSQGTVIKYMLDG
                     STQILFADGAVSSSPDSGPVHASPETSASPHNGDVADNTSQHKSETAPSEIITKKGKG
                     HKNQTSTASKSEAHDTLPEVVPTPMESHTGTWFTTTPDGRRIGTKGLEKITNLKPFLF
                     FQATDPINGTVMTTREDKVIIVEKKDGTRIVDHADGTRITTFYQVYEDHITPPNDEET
                     TEDPRTVTRQVKCMRIESSHYATIITNCEDSSCCATFGDGTSIIAKPQGSYQVLPSNT
                     GCLYIDKDCSATYCHELSSNMYHPFQKREELRASRYIMKHTSEVICEVQDPEGNIFKV
                     MADGSVSTALPKKKLEDKLNVQTEGYESLSSLHLEKNRMQIYGEHVPRFFVVYTDGSG
                     VELLRDSDIEEYLSLAYGESTTVVLQEPVQEHPGALSITVLRPFHEASQWIMKKELDS
                     IVPPNLQSRSWETFPSVEKKTPGPPFGTQIWKGLCIGAKQLTNIPAPILEGPKVLQMR
                     QFIQHEVIKNEVKLKLQISLKDYINHILKKEDEQQEMTVKDSRTEEERGNAADLLKLV
                     MSFPKMEETTKSHVTEVAAHLTDLFKQSMASAPKCSPENFTKDFFEKKWREAPQGKSW
                     KEKLEQQRNNIKKTQNYLMQIRTKEVTPYFKSELSPLIKSQYDYLEKLSKNLPPFTKK
                     NEAETKTADPDLHSDSTLTVDAKKEVSDAHPLPNQEVAENSQESTGQKETEYVTKYLQ
                     TSSPPNQYEHLTKSPKESYSQSQSEIETNATKEPAGQNHTEKFKISTKKSASQNQIEN
                     LIKSTKEPAGQSQMENISRPPTEEPENFMPIKIPTQSLLQDVTGKARKEKVRLPHYMM
                     SCKPKCQPHTKVEDSVGGKVNTSSIACAAIYNPDVSPFGFHLLPPSIQFGVLKEGHTY
                     ATIVKLKNVGVDFCRFRVKQPPPSTGLKVTYKPGPVAAGLQAELKVELFAMAVGEDGA
                     KDSAHISHTIEILTEHDVLFLPVEATVLTSSNYDNRPKDLPQGRENPMVYRTSTISSS
                     ALGVVMSQKATRH"
ORIGIN      
        1 ttgacttgag ggtcaggaac cggtttgggg gaagggagcg ggatccgttc aggaactggg
       61 cgtggtctcg gttaccaagg catcagggac gctcagacct ggcctcagcc cagttttgag
      121 gccaatgaac ctcccatcct tctcatggca cccaagaagg agaaacctac cgggagcaca
      181 agctataaga tatgggaacc ctcactcatt gctgcacata tgaaccagaa tgattggaag
      241 gcctccatcg ccttcgtggt tgggaaccga attgaggatg agcttcccat tcatgccctc
      301 aacctggctg tccaactgcc tcagcggaaa ctcttcagta ttgtgtcatg gaaagacatt
      361 ctgcagcaga tcaatgaaat acaggccctt gttggagcta ctactaaaaa ggggaagaag
      421 accataactg gcaacttacc attacactat gaggtgttgc tggcagcaaa aacaatcatg
      481 gacaatggag agaagctgac cttaccattg gtagggaaac tcttgaaatt tcaactcctg
      541 cagattaaaa ccaaggacca gcagaggcga gaaaacgaaa agaagatgat agaagaaaga
      601 gcaaagtcgg agaaggacaa aggaaaaggg aagtctccca aggagaagaa ggccgccact
      661 gttaaggctg ggaagggaaa gagcaaggac cagcccgagg ccaccgtaac agtgaagaag
      721 accacgcagt taaaacggag gggagaagat gacgacacca aattctacat cgacgatgag
      781 ccggacgatg gtgcccaaca ttacgttatt gttgtgggct tcaaccatcc tcagctattg
      841 gccattatga ctgaacttgg cattcctatt accagtgtga ttaaaatatc ttcagagaat
      901 tatgaacctc tgaagacata cctggcagca gtcatgcagc aacaggaagc tctccttcag
      961 ccggaagata tagcagctga aaatttgaag agagaaaatg acattaagga acttgaggtc
     1021 ttctggaagt acttggaacc aatcctgaat aatgagaagc ctgaaacaaa tctcttggat
     1081 gttgctcgac tccactacat ggtcaagaca aaacatttcc cttctgactg gtcagactat
     1141 gagcagatgc ttgacctagg cacggagatc tttgaaaatg tcgcctgttt gatgtacgac
     1201 agcctggact ggaagaggca gcatcatcac tatctgcaaa gcatgcagct catcaatgtc
     1261 ccacaagtgg ttagcgataa gaccatgttg gaagcgatcc cgattccaga gcctccacca
     1321 tcaactgctc cagcccccgg aaagaagaaa gcacagtatg aggaatcaca tgctccccca
     1381 tcagtggctt ttatcatcac aactgaagta gacatgcggt attacaatga cctgctgaat
     1441 ccaattccag aggaatttat ttcagtgccc ctgatactgc actgtatgct ggaacaggtt
     1501 atagcaacgg aagaggatct caccccgccg agtttggtgg agccagcccc cagagcagat
     1561 gggttagact acagaatcgc agctcacatc gtgtccatcc tgccttccct ctgcctcact
     1621 gagaaggaaa agaagaatct ccacgagata ttcttaactg aaggagagag cgaaagcaaa
     1681 accccaccca aaggccctct cctgctgaac taccacgaca cgtatgccca caagaagtac
     1741 gcgctgaagg accaaaagaa ttttgacccg gttcaaattg aggaggagat gcaatccaag
     1801 ctgccactgt gggaattcct tcagttccct ctgccgcctc cgtggaacag cactaaacgg
     1861 cttgccacca ttcatgaact gatgcatttc tgtaccaacg aagttctgag ctggaatgaa
     1921 gtagaacgag ccttcaaggt atttactttt gaaagcctga agctctcaga ggtggatgag
     1981 gcaggacggc tcaagcccac cgaggtgatc agtgagacaa atgttgaaaa tgtcaacatt
     2041 ccttgggaca atcctgccag gttcgctaag ctgataagac agcggtacat ccacaggatg
     2101 agcatacaga aggccaagcc agtattagta gaaaccgaac acaaagacag aacactattc
     2161 gtgaaccaga attttgccaa agctgagcaa gatgcacaag gagatgaaaa ctccccaaat
     2221 tgtgatcatc ctgctgctaa caatgtgatg gggtctactt ccaactccac gagaccccgg
     2281 tattctagtg atagacagct cacagagaaa gagaccagtg ggtccatgtg tccccaacca
     2341 gagtctgtgg agcagatcat ggacactgag atcaaaggtg gagcagccac aaaggatgat
     2401 tctcttgaaa agaaacccaa gaagatggtg gtggaggccg acatagagga cattaaaaaa
     2461 acacaacagc gcagtttaat ggactggagc tttactgaac attttcagcc gaaagtcctg
     2521 cttcaggttc ttcaggaggc tcatcagcag taccgatgtg ttgactcgta ctaccacacg
     2581 caggacaatt ccttacttct cgtctttcat aacccaatga atctacacca tctgcattgt
     2641 gaatattgga atattgctct tcattccaac gttggattca ggaattactt agaacttgtt
     2701 gcaaaatcta ttgaagaatg ggtcatacag gaagaagcaa agtaccagga agccaaaatg
     2761 gctgaggagc tcaacagagc caagaatgag ttggacttga aagctactac tgccaaaact
     2821 tctgctagca aaattggtgg ccccaaaaaa tctaaaagta acaaagtgtc cagcaaaaca
     2881 gagctaacag accaagaaaa agataaagag aaagagaaag aaaaagagaa agacaagatc
     2941 cccttcatat tagaaggctc tctcaaggca tggaaggaag aacaagagag gttggctgag
     3001 gaggaacgcc tgaaggagga aaagaaggca gagaagaagg ggaaggaagc aggtagaaag
     3061 aaaggcaagg ataaggcaga caaagaagac actaagagtt tgaaaaaaaa gtcgtcttcc
     3121 aaggagaaac ctaaggaaga accatctaag tcgctggaag caatagagga agccgtccca
     3181 cttccagaac cggaaattgt ttacccgttc cgaggataca atatgggaga cattcctatc
     3241 caaatctcag ggacaaatta ctatctgtat ccttctgacg gtgggcagat tgaagtggaa
     3301 aagatcaggt ttgaacgagg cccaactttc atcaaagtga aagtaaaaaa agataaacac
     3361 agttttataa ttcacctgaa agatccaaag gaaatcgtga aaagggaaaa ggaagaggag
     3421 cactcagaag aagaggaaga ggaagaggag gaggaagagg aagaggaaga ggaagagaat
     3481 gaacagaagg aagggaaaga ggagaatgtt aaacaaaatg tggaaatgaa gagaacacag
     3541 ataaagaagg aagctgtcag caagtttgga tccttttctg ccaccttaga aaatggaatc
     3601 tgcctctcca taagttacta tggatcaaat ggaatggcgc cagaggttat ggattctgat
     3661 ttggaagcaa tgatgaatat cccttcagct atgacagcaa cagtggttcc ctctatagtt
     3721 actgttcccc aaggcaaagg caaaactaag ccgaagggca aagaaaaaca caaagattcc
     3781 tttaaagaag aggaacttcc aaaagaagaa gaaaagaaga atcactcaca ggaagaagta
     3841 gaaccagaga ttgttataca ggaaacacct tatgtgccca ccttccaaaa cctaaatgta
     3901 tcttgcccca atgggctcct gcttaccttc attgggcaag aatctacaga tgaagaatct
     3961 acctggaacc tcatgatccg ccagagctac ccccagaggt tgaagcacta tgaattctat
     4021 aaagcagtga tgccacccac agagcaggag gcatcaagag ttgtcaccag ccagggcacc
     4081 gttatcaagt atatgctgga tggatccaca cagattcttt ttgcagatgg tgctgtgagc
     4141 agcagtcctg actcaggtcc tgttcatgca tctcctgaga cgtctgcaag cccccacaat
     4201 ggagatgtgg cagacaacac ttctcagcat aaatccgaaa cagcaccttc tgagatcatc
     4261 accaagaaag gaaaaggtca caaaaatcaa acatcaacgg caagtaagag cgaagcccat
     4321 gatactctcc cagaagtggt tccaactcct atggagtccc acactggcac ctggtttaca
     4381 acaacgcctg atggaaggag gatcggcacc aaaggcctag agaaaatcac caacttgaaa
     4441 ccatttttat tcttccaggc tacagatccc atcaatggaa cggtcatgac tactcgagaa
     4501 gacaaggtga tcattgttga gaagaaggac gggacccgga tcgtggacca tgccgatggt
     4561 accagaatca caacctttta ccaagtgtat gaagatcata ttactccccc aaatgatgaa
     4621 gaaacaaccg aagatccaag gactgtcact agacaggtga agtgcatgcg gatagaaagc
     4681 tcgcactatg ccactattat cacgaactgc gaggacagta gctgctgtgc cacttttggg
     4741 gacggaacat ctattattgc aaagccacag ggatcatacc aggtgctacc ttcaaacaca
     4801 ggctgccttt atatcgacaa agactgctcg gccacatatt gccatgaatt gagcagtaat
     4861 atgtaccatc ccttccagaa gcgtgaagag ctgagagcca gcaggtacat catgaagcac
     4921 acctcagagg tgatctgtga ggtccaggat cccgagggga acatctttaa ggtcatggct
     4981 gatggctctg tatcaacagc gttacctaaa aagaagctag aagacaagtt gaatgtacag
     5041 acggagggct acgaaagctt atcatcactt caccttgaaa agaatcgcat gcagatctat
     5101 ggtgaacatg ttcccagatt ttttgttgtc tatactgatg gatcaggagt ggaacttctc
     5161 cgagacagtg acatagaaga atacttatcc ttggcctatg gagagtcaac gactgtggtt
     5221 ctccaggaac cagtacagga acacccaggt gccctgagca tcacagtcct tcgccctttc
     5281 catgaggcat cacaatggat catgaagaag gagctggaca gcatcgttcc tccaaatctc
     5341 cagtcgagat catgggagac atttccttca gttgagaaaa agactccagg accaccattt
     5401 ggcactcaga tttggaaagg cctctgtatt ggggctaagc agctgacaaa catcccagct
     5461 cctatacttg aaggccccaa ggtgctacag atgcgtcagt tcatccagca cgaagtcata
     5521 aagaacgagg tgaaactgaa gctgcaaatt tccctgaagg actatataaa ccacatcctg
     5581 aagaaagaag atgagcaaca agagatgaca gtcaaggatt ccagaacgga ggaggagaga
     5641 ggcaatgctg cagatctcct caagctggtt atgtctttcc ctaaaatgga ggaaactaca
     5701 aaaagtcacg tgactgaagt tgctgcccac ctaacagatt tattcaagca atctatggct
     5761 tcggctccaa aatgttcacc agaaaacttc actaaagatt tctttgaaaa gaagtggagg
     5821 gaggctccac aaggaaagag ttggaaagaa aagcttgagc aacagaggaa caatattaag
     5881 aaaacacaaa attacctaat gcaaattagg acaaaagaag taacgcctta ttttaagtct
     5941 gaattgagcc cattgattaa gtcacagtat gattatctgg agaagctttc caaaaacctg
     6001 cctccgttta caaagaaaaa tgaggctgaa accaagacag ctgacccaga tcttcactca
     6061 gattctacac tgactgtaga tgcaaaaaaa gaagtctcag atgcacatcc ccttccaaac
     6121 caggaggttg ctgagaatag ccaggaatct actggccaaa aggaaactga atatgtaacc
     6181 aaatatctcc agacctcttc tcccccaaac caatatgaac atttaacaaa atctcccaag
     6241 gagtcatata gtcaaagtca aagtgaaatt gaaaccaacg ctaccaagga acctgctggc
     6301 cagaaccaca ctgaaaagtt taaaatttct accaagaagt ctgctagcca aaaccaaatt
     6361 gaaaatctaa taaaatctac caaggagcct gctggtcaaa gccaaatgga aaatatctcc
     6421 agaccgccta ctgaagaacc agaaaatttt atgccaatca aaattccaac ccagtcattg
     6481 ctgcaggatg ttactggaaa agcaagaaaa gagaaagtga ggttacctca ttacatgatg
     6541 agctgcaagc ccaagtgtca gcctcacacc aaggtggaag attctgttgg aggaaaagtg
     6601 aacacatcct ccattgcatg tgctgctatt tataacccag acgtatcccc tttcgggttc
     6661 caccttctcc caccatcaat acagtttgga gtgcttaaag aaggacacac ctatgcaacg
     6721 attgtgaagc tcaagaatgt tggtgtggac ttctgcaggt ttagagtgaa gcagccccca
     6781 cccagcacgg gactgaaagt gacatataaa cctgggcctg tggctgctgg cttgcaagca
     6841 gagctaaagg tagagctatt tgccatggct gttggagaag acggcgccaa ggactcagca
     6901 cacatctccc acaccattga aatcctgacg gagcacgatg ttctattctt acccgtggag
     6961 gcaacagttt taacaagcag taactatgac aatcgaccaa aagatcttcc ccagggaaga
     7021 gaaaatccca tggtctacag gacttccaca atctcctcct ctgcacttgg agtcgtcatg
     7081 tctcagaagg ccactcgtca ttagttcttt tcttctcggt acagctcaat tgcctccatg
     7141 atcctctcag cctacacaga cgacaaagga agagatcacc cagtgcacac ccacgacacc
     7201 caagagctgg gaaggcctgg ctaatgtagc ctgaatcagc ttaataaaga catggcagcc
     7261 ggagtgcagc gcagcactta gagttgtcgg ttttctctta tttttaattt gtaagaaaga
     7321 gaccaaatac catggactca gacgagacca tatgggacac aatagggcag ctcctgggaa
     7381 caccgaagag atgagctccc ctactgcccc atgctggtca gaccaagtcc aagggcatca
     7441 gacaaaggca atgagcaact cctggaattc atctactttg tgccacacag agctatgtgg
     7501 ctaacacagg gtaaggattt tactaaaaag tcagaaaccc attataagag ccaacctacc
     7561 gctttgactg tttcaattgt cttcttccca gtgaagtagt tgtcaccctg ggtctcccct
     7621 ggaacctgcc agacatatga gatcctgaac aagacgggta ttattttata aaaatgccac
     7681 agtcactatc tcccattaag gataggtaca atattaaatg ttttatttgt atcatcatga
     7741 gcactatcct gtaaatgttt ataatgtatc caatttctga gtctattttt aaatttttgt
     7801 tttgctgaat aaatacttta tttcctta
//
