LOCUS       XM_039106376            4865 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus Sp3 transcription factor (Sp3),
            transcript variant X1, mRNA.
ACCESSION   XM_039106376
VERSION     XM_039106376.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 19, 2024 this sequence was replaced by
            NM_001427405.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4865
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4865
                     /gene="Sp3"
                     /note="Sp3 transcription factor; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 48
                     ESTs, 5 long SRA reads, 14 Proteins, and 96% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 166 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:367846"
                     /db_xref="RGD:1583765"
     CDS             864..3209
                     /gene="Sp3"
                     /codon_start=1
                     /product="transcription factor Sp3 isoform X1"
                     /protein_id="XP_038962304.1"
                     /db_xref="GeneID:367846"
                     /db_xref="RGD:1583765"
                     /translation="MTAPEKPVKQEEMAALDVDSGGGGGGHGEYLQQQQQQQQHGNGA
                     AAAAAAQDTQPSPLALLAATCSKIGPPSPGDDEEEAAAAAGVPAAAAGATGDLASAQL
                     GGAPNRWEVLSATPTTIKDEAGNLVQIPGAATSSGQYVLPLQNLQNQQIFSVAPGSDS
                     SNGTVSNVQYQVIPQIQSTDAQQVQIGFTGSSDNGGINQESSQIQIIPGSNQTLLASG
                     TPPANIQNLIPQTGQVQVQGVAIGGSSFPGQTQVVANVPLGLPGNITFVPINSVDLDS
                     LGLSGSSQTMTAGINADGHLINTGQAMDSSDNSERTGERVSPDVNETNADTDLFVPTS
                     SSSQLPVTIDSTGILQQNTNSLTTTSGQVHSSDLQGNYIQSPVSEETQAQNIQVSTAQ
                     PVVQHLQLQDSQQPTSQAQIVQGITPQTIHGVQASGQNISQQALQNLQLQLNPGTFLI
                     QAQTVTPSGQITWQTFQVQGVQNLQNLQIQNTAAQQITLTPVQTLTLGQVAAGGALTS
                     TPVSLSTGQLPNLQTVTVNSIDSTGIQLHPGENADSPADIRIKEEEPDPEEWQLSGDS
                     TLNTNDLTHLRVQVVDEEGDQQHQEGKRLRRVACTCPNCKEGGGRGTNLGKKKQHICH
                     IPGCGKVYGKTSHLRAHLRWHSGERPFICNWMFCGKRFTRSDELQRHRRTHTGEKKFV
                     CPECSKRFMRSDHLAKHIKTHQNKKVIHSSSTVLASVEAGRDDALITAGGTTLILANI
                     QQGSVSGIGTVNASATSNQDILTNTEIPLQLVTVSGNETME"
ORIGIN      
        1 gaagtagatg gttggtaacc aagggctaag ggtggggagg atgaggtggg atgggaaggc
       61 gatgtatccg agtatgcgac caagagctga atgtgtgtga aaaagtcctc ctccagcctc
      121 ggagggggtg tctcccccaa taccagctcc ctcccccagg gctcatgggg cgggtccggt
      181 ttgctcagta gcagcggcag ccttggggct gagcggtggt ggcctcctgg cagcgctggc
      241 aagaaccagc ttcgagagcc catgccctgg ggagatccag tccaggcggc tgccaggatg
      301 gaggaaacgt cgagtggagt cggagccacc ggggacggac ttcctcccca gttcagctcc
      361 ccgacagctt ggcaaggcct gcacgaaggg ccaacgagtg gaagaggctt gcgcctcggg
      421 cctggcagcc gtagccgagg aacgaggctg gcacaccggg gtaacgcgcg agccggggcc
      481 gttctcagga acctacggcg ccacggccgc tcattgtctc tccccttcaa cccgggggca
      541 aacaggaagc ccgccgcctg gccaagcgac ggacaggcgt ccggaccaat gaacacagct
      601 gacggagagc ccagcggcaa atgagcgccg ggaagagggg cggaacttcc gggcgggctg
      661 tcaccctctt cccccctttt gggctggagg ctccaccttt tgtgtttccc gcacagtcaa
      721 tcaaaatagg aaaaaaaaaa atccccggac cgctccggcc gtgtccgccg ccgcttcccg
      781 catcctctcc cgccgccgcc gccttcgctt ctcaccatgt gtaaggcggc ggggagcccc
      841 gcctgaggtg tcctaaacac actatgaccg ctcccgaaaa gcccgtgaaa caagaggaaa
      901 tggctgcctt ggacgtggac agcggcggcg gcggcggcgg ccacggcgag tatctgcagc
      961 aacagcagca gcagcagcag cacggaaacg gcgcggcggc ggcggcggcg gcccaggaca
     1021 ctcagccgtc accgctcgct ctgctggccg ctacctgcag caagataggg ccgccatcgc
     1081 cgggcgacga cgaggaggag gcggccgccg ccgccggggt ccccgccgcc gccgccggag
     1141 cgacaggtga tttggcttct gcacagttag gaggagcacc aaaccgatgg gaggttttgt
     1201 cagctacacc tacgactata aaagatgaag ctggtaatct agtacagatt ccaggtgctg
     1261 ctacttcaag tgggcagtat gtccttcccc ttcagaattt gcagaatcaa caaatatttt
     1321 cagttgcacc aggatcagat tcatcaaatg gtacagtgtc caatgttcaa tatcaagtaa
     1381 taccacagat tcagtcaaca gacgctcagc aggttcagat tggcttcaca ggctcctcag
     1441 ataatggggg tataaatcaa gaaagcagcc aaattcagat cattcctggc tctaatcaaa
     1501 ccttacttgc ctctggaaca cctcctgcta atatccagaa tctcatacca cagactggtc
     1561 aagtccaggt tcagggagtt gcaattggtg gctcatcatt tcctggccaa actcaagtag
     1621 ttgctaatgt gcctcttggt ctgccaggaa atattacctt tgtaccaatc aatagtgtcg
     1681 atctagattc tttgggactc tcgggaagtt ctcagacaat gactgcaggc attaatgccg
     1741 atggacattt gataaacaca ggacaagcta tggatagttc agacaattca gaaaggactg
     1801 gtgagcgggt ttctcctgat gttaatgaaa ctaatgctga tacagattta tttgtgccaa
     1861 catcctcttc atcacagttg cctgttacaa tagatagtac aggtatatta cagcaaaaca
     1921 caaatagctt gactactact agtgggcaag tccattcttc agatcttcag ggaaattata
     1981 tccagtcgcc tgtttctgaa gagacacagg ctcagaatat tcaggtttct acagcacagc
     2041 ctgttgtaca acatctacaa cttcaagatt ctcaacagcc aaccagtcaa gcccaaattg
     2101 tgcaaggtat tacaccacag acaatccatg gcgtgcaagc cagtggtcaa aatatatcac
     2161 aacaggcttt gcaaaacctt cagttgcagc tgaatcctgg aactttttta attcaggcac
     2221 agacagtgac cccttctgga cagataacct ggcaaacatt tcaagtacaa ggggtccaga
     2281 acttgcagaa tttgcaaata cagaataccg ctgcccaaca aattactttg acgcctgttc
     2341 agacactcac gcttggtcaa gttgcagcag gtggagcctt gacttcaact ccagttagtc
     2401 taagcactgg tcagttgcca aatctacaga cagttacagt aaattctata gattctactg
     2461 gtatacagct acacccagga gagaatgccg acagtcctgc agatattagg atcaaggaag
     2521 aagagcctga tccggaagag tggcagctca gtggtgattc tacactgaat accaatgacc
     2581 taacacactt acgagtacaa gtggtagatg aagaagggga ccaacaacat caagaaggaa
     2641 aaagacttcg gagggtagct tgcacctgtc ccaactgtaa agaaggtggt gggagaggta
     2701 ccaatcttgg gaaaaagaag caacacattt gtcatatacc aggatgtggt aaagtctatg
     2761 ggaaaacctc acatctgaga gcacatctcc gttggcattc tggggagcgc ccttttattt
     2821 gtaactggat gttctgtggt aaaagattta cacggagtga tgaattacag aggcacagaa
     2881 gaacacatac aggtgagaag aaatttgttt gtccagaatg ttcaaaacgc tttatgagaa
     2941 gtgaccacct tgccaaacat attaaaacac atcagaataa aaaagtcatt cactctagca
     3001 gcacagtgct agcatctgtg gaagctggga gagatgatgc cttgattact gcaggaggaa
     3061 caacacttat ccttgcaaat attcaacagg ggtctgtgtc agggatagga actgtcaatg
     3121 cttctgccac cagcaatcaa gacatcctta ccaacactga aataccttta cagcttgtca
     3181 cagtttctgg aaatgagaca atggagtaaa tattacacaa atacttattc attgtggtta
     3241 tttttataca gtagtgagaa gaatattgtt cctaagttct tagatatctt tttattgatg
     3301 tgcaaaaatt tttggattga cagtaacttg gttatacatg acactgaaat gccttacttt
     3361 gtatgatatt ccatagtata ttaaaaatgg taaaatttgc atgggttttg taggtacttt
     3421 tggaatctag aagaaatgaa attttaccaa gttatataaa gagaaaattg aatttaacaa
     3481 tgcgaatggt agtctaacca aatgcatcaa tcctgtgtgg tttagtgtaa aaatgagaaa
     3541 ctgttggtat ttatctattg taagataaaa atgttggtgg gtgaaagaaa tcatgttata
     3601 aatttttgta attttcttga tgactggaat ttttattatg cataactgac aaatcaagtt
     3661 tccaagcaaa tgttacatag tgtaggcttt acttagctta tcaatttgtc attttgaagc
     3721 taattatttt aattaggtta actgtacaat attttaagca ttactcttgt aagattttga
     3781 aaactacatt ttaacatgga cctttaggga tagtcacctt ttaaatcctg ttgaaaagcc
     3841 atgtttaaga tttaatttgc caaaataatg tcttgttaat attctttcaa taatgaagtt
     3901 gggcaatata accgatgttt ttaaaaagtt taaaatgtgt aggttgaagc atttgggtgg
     3961 taaaatgttc tagtgaatta ccccttttcc tgaagtttgg aggaccaaaa aataataata
     4021 aggtgtattg cgtcttagca gaggtttttt ttttttttgt ttgttttttt ttttaatttt
     4081 tattattaaa tccaatcttg tttccaaaaa atatgtctgc cagggcctta aaagccatcg
     4141 ttgtaaatta ccaataaagt ataacatatg caaacataac aaaatcactt ccacagtgac
     4201 gatactccaa ccatatggat attagtcata gaaactagag actttatgat atttttttaa
     4261 gtttttttta atctaggtag tctgcactta aatatctacc attttccttt ttttgcttct
     4321 tcccttaaaa tttatatgta tccaatacat ttaattgaga aatgtatgtt ttttattatg
     4381 ctgtattttc tttttatttt ttaattattg tttatatttt caattaaaaa tgtacaaaat
     4441 aaaattacat tgctggtctt gtaagagctc tacaattttc ctacatgtac ctataactac
     4501 agcagttcat caatttcaag aagttggatt ctgttcattt gttatcttta agaccacctc
     4561 agatttacag gctaccttat tgtacgttta aagtgtatta taacagtgtg gtagttaata
     4621 aaacactatt ttttttttct tttgagtttg ttgtagtccg atgcatttaa aatactgcaa
     4681 tggtatggat aagaaagtct ggcttatttt tccttacttt atttagactt ttatttttag
     4741 attcttgatt tcagatgctg ggattgtaaa taaatatatt tacttaaaaa gaggtgtata
     4801 gaggtgctgg caattaattt ttcacttaaa atgaatttat taaatataac ttgaaacttg
     4861 aaaaa
//
