LOCUS       XM_039083724            3681 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus SP140 nuclear body protein (Sp140),
            transcript variant X11, mRNA.
ACCESSION   XM_039083724
VERSION     XM_039083724.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039083724.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3681
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3681
                     /gene="Sp140"
                     /note="SP140 nuclear body protein; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 17
                     ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 101
                     samples with support for all annotated introns"
                     /db_xref="GeneID:316580"
                     /db_xref="RGD:1306355"
     CDS             504..2228
                     /gene="Sp140"
                     /codon_start=1
                     /product="nuclear body protein SP140 isoform X11"
                     /protein_id="XP_038939652.1"
                     /db_xref="GeneID:316580"
                     /db_xref="RGD:1306355"
                     /translation="MAGGDNGLSSRMIPENQNGEQSDDYQLMFKLFKENKVEIASAIT
                     KLFPFLMSLRDRDFISEQKYQECQETCKNLVPVDRVVYDILSDIQKKFSRDLLKVIFS
                     NVHLKAYPDLQEILKHFLSVSENHRTVQRINGRDVEERPRLPAVVREASYSPGNTQMS
                     AGQAEEVPSLPQCNGGDERDFTCQSAEGRSSPEQMCDGQEPQDNLPSSLRCEAASYSP
                     GNTQMSAGQAEEVPSLPQCNGGDERDFTCQSAEGRSSPEQMCDGQEPQDNLPSSLRCE
                     AASCSPGNTQTNAEQAEEAPSLPQCNGREGSSSCEQMCDGPDPQDELSSSLRRDTGAQ
                     QPTSEERCTCVMCSPTYVPEDLEARMGSSQGAMDTGRKIPAGKSKKRRRKKKGYNWSK
                     PKRRKPMIVRRKYGRRAVTQAVFRRKKMKNPGLSAKIRGPRRHGKEMANFNAELLPVT
                     CGNLKGVLHKDKFKQGISVMSIQCQDGNWVTPPEFEIMGGHGRSKNWKLSLRCYNWPL
                     KLLIQRNFLPIPPRIYGKRKKSPRASSSTQRHGLWKFPRHSQHHMTGLFKLAGDDWFV
                     SGSLGSPS"
ORIGIN      
        1 cagaagctcg gaaacaaagc cacgccttct ggcttttcct actctgctgt tcaaatatca
       61 gatgccacct cctctggttc tgactcaagg ggctgccggg acagccacag gccagagaga
      121 ctgcggacga cctactcttc ctcatccttc caggcaccac ccagcaaagg gcaaaggagt
      181 tccttccttt actaaccagc cagctggcct cagacagcta ggagctctta gctgaaacaa
      241 accctcccac cttctttcct tggagggcag caggggtccc aggtttctgg ggacttgggc
      301 tgtctttgct cctcccctgt ggggcagagc ctagtggggg ccagtgcgtt agtacagtga
      361 tgtcatagtt gaacaatttc actttccttt ttctcctctt tggagggctc cgaaggagtt
      421 ctctctgggc ttcccagagt ctcagagcgg gggttcagtc tgccctgagc caagttcagg
      481 gtcccttggg gtctgcgtag gggatggcag gaggagacaa tggactcagc agcaggatga
      541 tcccagaaaa ccagaatgga gagcagtcag atgactatca gctaatgttc aagctcttca
      601 aagaaaacaa ggtggagatt gcaagtgcca tcaccaagct atttcctttc ctcatgagcc
      661 ttcgagaccg agacttcatc tcggagcaga agtatcagga atgtcaagaa acatgtaaga
      721 acctggttcc agtggacaga gtggtgtatg acatcctcag tgacatacag aagaagttta
      781 gccgggatct tctgaaagtg atattcagca acgtgcatct gaaggcctac cctgacttac
      841 aggagattct aaaacacttc ctaagtgttt ctgaaaatca caggactgta caaaggataa
      901 atggaagaga tgttgaagag aggcccagac tgccagctgt cgttagggaa gcatcctaca
      961 gtcctggaaa tacacaaatg agtgctggac aggcagagga ggtgcccagc cttccacagt
     1021 gcaatggagg agatgagcga gacttcactt gccagtcagc tgagggaagg agttctcctg
     1081 aacaaatgtg tgatggacaa gagcctcagg acaacctgcc ctcctccctg agatgtgaag
     1141 cagcatccta cagtcctgga aatacacaaa tgagtgctgg acaggcagag gaggtgccca
     1201 gccttccaca gtgcaatgga ggagatgagc gagacttcac ttgccagtca gctgagggaa
     1261 ggagttctcc tgaacaaatg tgtgatggac aagagcctca ggacaacctg ccctcctccc
     1321 tgagatgtga agcagcatcc tgtagtcctg gaaatacaca gacgaatgct gaacaagcag
     1381 aggaggcgcc cagccttcca cagtgcaatg gaagagaggg aagtagttct tgtgaacaaa
     1441 tgtgtgatgg accagatccc caggatgaac tgtcctcatc actgagacgt gacacaggag
     1501 cacaacaacc cacaagtgaa gagaggtgta cctgtgtcat gtgttcccca acatatgtgc
     1561 cagaagacct agaagcaagg atgggaagca gtcaaggagc catggacact gggaggaaaa
     1621 ttcctgcagg aaaatccaag aagaggagaa gaaaaaagaa aggttacaac tggtcaaaac
     1681 caaagcggag gaagccaatg attgtacgga gaaaatatgg cagaagagcc gttacccagg
     1741 cagttttcag gagaaagaaa atgaagaacc caggactctc tgctaagatc aggggtccaa
     1801 gaaggcacgg gaaggaaatg gccaatttta acgcggagtt gctacctgtg acgtgtggta
     1861 acttgaaggg agtattacac aaggataaat tcaaacaagg gatatctgtg atgtctatac
     1921 agtgccagga tgggaactgg gtcacacccc ctgaatttga aatcatggga ggccatggaa
     1981 gatcaaagaa ctggaaattg agtctgcggt gctataattg gcccctgaaa cttctgatcc
     2041 agagaaattt tctacccatt cctccacgga tatatggcaa gagaaaaaag tctcccaggg
     2101 cctcttcatc tactcagagg catggactct ggaaatttcc acgtcacagt cagcatcaca
     2161 tgacaggact ttttaaactg gctggtgatg actggtttgt gtcaggaagt cttggatccc
     2221 catcataacc gtcatttctg agtgatgaca tctgcattga gacatccaga gtctcttttc
     2281 ctaagcgaag ccttatttac tcgtctgtgt gatgcttcat tctaaagaac acacagagaa
     2341 tgcccaagga ctggaagaga agatcataac aagagccctc tctgactgac cctgagtgtt
     2401 ttgtcaaagt tgctgtctac gttaaataat gatcaatagg gtgaagtggg ggattctaga
     2461 ccagtgggta gtgacaggac cacccctcag gtgagtatat cctagatcat gcttgtctcc
     2521 agctctcagc ccagggctgg agttaagagc tgtgactccc tgtatcacag aagggaagaa
     2581 tgaaaagaca ccacagtgga tgtgccaaag caatgtgaat tctactgttg cttcttagca
     2641 ttgtggccag catggcatct ttttgagatt tgaatagaga ggagggaggc caccaagtgg
     2701 aagagctgtg gccccgggga gccttagttt catttgattt tcagggggag ctacagaaag
     2761 tgatggattt ttctttctgg ggtcacttgg actctagaaa tctgagcctt atgggttctt
     2821 gaatacgatt ggttcatctt cagcctcatt ctcatggtac tactctgcag tagagtacat
     2881 gtgtggccaa cacatcctgg gttggcaagt tgaaagaaaa tggcctagag ccttgaatgc
     2941 tcaaggataa gtagaattat ttatttagaa accaggtcct gcctccttgc atgacttcac
     3001 aaaggcacct tggggactag aaccagcaag tagaatttgc tttcatccaa acagtagttc
     3061 gatgatcctc tttttctcct actagataca cagatccata aaaatagata taagggggga
     3121 gggagaaata gatgttttaa gagaaacact ttagacagaa tgaattaaat cagcattttc
     3181 aatcgaagaa tttaagagtg aatacactct gccaacagtt cttgggaaac cccctgcagg
     3241 tgcatgaggc cataacttct acaagctaca gtgtctcctt tgatcttgct gttcacatta
     3301 tccactaatt agtttatgtg ggaactaaac aagctcaaca cttgagttgt tcctacctat
     3361 gagctcctca ataattaaac aaattttata ggcaagatgg cacatggctg gaatcccagc
     3421 acatggaatg taaaagcaga aggatcagga gttcaaggcc agcctgggct aaagtgagac
     3481 atatctcaga agtaagatta atgctggtga cgataaaaca aatttaagta actatcattt
     3541 gactacttga atggataatc atattttttt ttttcggagc tggggaccga acccagggcc
     3601 ttgagcttgc taggcaagtg ctctactaaa tccacaaccc gggataatca tatcttagac
     3661 ttaatattat cactcaaatt t
//
