LOCUS       NM_001012133            3003 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus SP140 nuclear body protein (Sp140), mRNA.
ACCESSION   NM_001012133 XM_237361
VERSION     NM_001012133.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3003)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 3003)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC081971.1.
            
            On Feb 11, 2005 this sequence version replaced XM_237361.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC081971.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760384
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3003
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q35"
     gene            1..3003
                     /gene="Sp140"
                     /note="SP140 nuclear body protein"
                     /db_xref="GeneID:316580"
                     /db_xref="RGD:1306355"
     exon            1..494
                     /gene="Sp140"
                     /inference="alignment:Splign:2.1.0"
     CDS             463..2628
                     /gene="Sp140"
                     /note="nuclear body protein SP140-like"
                     /codon_start=1
                     /product="nuclear body protein SP140"
                     /protein_id="NP_001012133.1"
                     /db_xref="GeneID:316580"
                     /db_xref="RGD:1306355"
                     /translation="MAGGDNGLSSRMIPENQNGEQSDDYQLMFKLFKENKVEIASAIT
                     KLFPFLMSLRDRDFISEQKYQECQETCKNLVPVDRVVYDILSDIQKKFSRDLLKVIFS
                     NVHLKAYPDLQEILKHFLSVSENHRTVQRINGRDVEERPRLPAVVREASYSPGNTQMS
                     AGQAEEVPSLPQCNGGDERDFTCQSAEGRSSPEQMCDGQEPQDNLPSSLRCEAASYSP
                     GNTQMSAGQAEEVPSLPQCNGGDERDFTCQSAEGRSSPEQMCDGQEPQDNLPSSLRCE
                     AASCSPGNTQTNAEQAEEAPSLPQCNGREGSSSCEQMCDGPDPQDELSSSLRRDTGAQ
                     QPTSEERCTCVMCSPTYVPEDLEARMGSSQGAMDTGRKIPAGKSKKRRRKKKGYNWSK
                     PKRRKPMIVRRKYGRRAVTQAVFRRKKMKNPGLSAKIRGPRRHGKEMANFNAELLPVT
                     CGNLKGVLHKDKFKQGISVMSIQCQDGNWVTPPEFEIMGGHGRSKNWKLSLRCYNWPL
                     KLLIQRNFLPIPPRIYGKRKKKRTQSLHHFPADPDNSDECEVCRDGGTLFCCDTCSRA
                     FHEECHIPAVEAEVTPWSCIFCRMQSLGSQQSLPESEILQREMVPQEQLKCEYVLLRV
                     YCCSESSFFSKMPYYYYFREMAVGVQEPMWLDIIKRKLSDQAYSQVEDFVQDMRLIFR
                     NHRITFKDPKFGEMGLILESKFEKSFKEAFAIQGRSEKS"
     exon            495..657
                     /gene="Sp140"
                     /inference="alignment:Splign:2.1.0"
     exon            658..826
                     /gene="Sp140"
                     /inference="alignment:Splign:2.1.0"
     exon            827..910
                     /gene="Sp140"
                     /inference="alignment:Splign:2.1.0"
     exon            911..1021
                     /gene="Sp140"
                     /inference="alignment:Splign:2.1.0"
     exon            1022..1102
                     /gene="Sp140"
                     /inference="alignment:Splign:2.1.0"
     exon            1103..1213
                     /gene="Sp140"
                     /inference="alignment:Splign:2.1.0"
     exon            1214..1294
                     /gene="Sp140"
                     /inference="alignment:Splign:2.1.0"
     exon            1295..1375
                     /gene="Sp140"
                     /inference="alignment:Splign:2.1.0"
     exon            1376..1456
                     /gene="Sp140"
                     /inference="alignment:Splign:2.1.0"
     exon            1457..1558
                     /gene="Sp140"
                     /inference="alignment:Splign:2.1.0"
     exon            1559..1609
                     /gene="Sp140"
                     /inference="alignment:Splign:2.1.0"
     exon            1610..1675
                     /gene="Sp140"
                     /inference="alignment:Splign:2.1.0"
     exon            1676..1753
                     /gene="Sp140"
                     /inference="alignment:Splign:2.1.0"
     exon            1754..1858
                     /gene="Sp140"
                     /inference="alignment:Splign:2.1.0"
     exon            1859..2001
                     /gene="Sp140"
                     /inference="alignment:Splign:2.1.0"
     exon            2002..2049
                     /gene="Sp140"
                     /inference="alignment:Splign:2.1.0"
     exon            2050..2091
                     /gene="Sp140"
                     /inference="alignment:Splign:2.1.0"
     exon            2092..2201
                     /gene="Sp140"
                     /inference="alignment:Splign:2.1.0"
     exon            2202..2307
                     /gene="Sp140"
                     /inference="alignment:Splign:2.1.0"
     exon            2308..2385
                     /gene="Sp140"
                     /inference="alignment:Splign:2.1.0"
     exon            2386..2529
                     /gene="Sp140"
                     /inference="alignment:Splign:2.1.0"
     exon            2530..2979
                     /gene="Sp140"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctctgctgtt caaatatcag atgccacctc ctctggttct gactcaaggg gctgccggga
       61 cagccacagg ccagagagac tgcggacgac ctactcttcc tcatccttcc aggcaccacc
      121 cagcaaaggg caaaggagtt ccttccttta ctaaccagcc agctggcctc agacagctag
      181 gagctcttag ctgaaacaaa ccctcccacc ttctttcctt ggagggcagc aggggtccca
      241 ggtttctggg gacttgggct gtctttgctc ctcccctgtg gggcagagcc tagtgggggc
      301 cagtgcgtta gtacagtgat gtcatagttg aacaatttca ctttcctttt tctcctcttt
      361 ggagggctcc gaaggagttc tctctgggct tcccagagtc tcagagcggg ggttcagtct
      421 gccctgagcc aagttcaggg tcccttgggg tctgcgtagg ggatggcagg aggagacaat
      481 ggactcagca gcaggatgat cccagaaaac cagaatggag agcagtcaga tgactatcag
      541 ctaatgttca agctcttcaa agaaaacaag gtggagattg caagtgccat caccaagcta
      601 tttcctttcc tcatgagcct tcgagaccga gacttcatct cggagcagaa gtatcaggaa
      661 tgtcaagaaa catgtaagaa cctggttcca gtggacagag tggtgtatga catcctcagt
      721 gacatacaga agaagtttag ccgggatctt ctgaaagtga tattcagcaa cgtgcatctg
      781 aaggcctacc ctgacttaca ggagattcta aaacacttcc taagtgtttc tgaaaatcac
      841 aggactgtac aaaggataaa tggaagagat gttgaagaga ggcccagact gccagctgtc
      901 gttagggaag catcctacag tcctggaaat acacaaatga gtgctggaca ggcagaggag
      961 gtgcccagcc ttccacagtg caatggagga gatgagcgag acttcacttg ccagtcagct
     1021 gagggaagga gttctcctga acaaatgtgt gatggacaag agcctcagga caacctgccc
     1081 tcctccctga gatgtgaagc agcatcctac agtcctggaa atacacaaat gagtgctgga
     1141 caggcagagg aggtgcccag ccttccacag tgcaatggag gagatgagcg agacttcact
     1201 tgccagtcag ctgagggaag gagttctcct gaacaaatgt gtgatggaca agagcctcag
     1261 gacaacctgc cctcctccct gagatgtgaa gcagcatcct gtagtcctgg aaatacacag
     1321 acgaatgctg aacaagcaga ggaggcgccc agccttccac agtgcaatgg aagagaggga
     1381 agtagttctt gtgaacaaat gtgtgatgga ccagatcccc aggatgaact gtcctcatca
     1441 ctgagacgtg acacaggagc acaacaaccc acaagtgaag agaggtgtac ctgtgtcatg
     1501 tgttccccaa catatgtgcc agaagaccta gaagcaagga tgggaagcag tcaaggagcc
     1561 atggacactg ggaggaaaat tcctgcagga aaatccaaga agaggagaag aaaaaagaaa
     1621 ggttacaact ggtcaaaacc aaagcggagg aagccaatga ttgtacggag aaaatatggc
     1681 agaagagccg ttacccaggc agttttcagg agaaagaaaa tgaagaaccc aggactctct
     1741 gctaagatca ggggtccaag aaggcacggg aaggaaatgg ccaattttaa cgcggagttg
     1801 ctacctgtga cgtgtggtaa cttgaaggga gtattacaca aggataaatt caaacaaggg
     1861 atatctgtga tgtctataca gtgccaggat gggaactggg tcacaccccc tgaatttgaa
     1921 atcatgggag gccatggaag atcaaagaac tggaaattga gtctgcggtg ctataattgg
     1981 cccctgaaac ttctgatcca gagaaatttt ctacccattc ctccacggat atatggcaag
     2041 agaaaaaaga agagaacaca aagtttgcat catttcccag cggacccaga caactcagat
     2101 gagtgtgagg tgtgccggga tggaggaacg ctcttctgct gtgacacatg ttccagagcc
     2161 ttccatgaag agtgtcatat cccagcagtg gaagctgagg taacaccatg gagttgcatc
     2221 ttctgtagga tgcagtcctt aggaagtcaa cagagtcttc cagaatctga gatactgcag
     2281 agggagatgg tgccccagga acagttgaag tgtgagtatg ttctcttgag agtctattgc
     2341 tgttctgaga gctccttttt ttccaagatg ccatattatt attattttag agagatggct
     2401 gtgggcgtgc aagaacctat gtggttggac ataatcaaga gaaagctgag tgatcaggct
     2461 tactcccaag tagaagactt cgtgcaggac atgagactca tcttccggaa tcacagaatc
     2521 acgttcaagg accctaagtt tggtgaaatg ggactcatac tggagtccaa gtttgagaag
     2581 agtttcaagg aagcgtttgc tattcaagga agaagtgaaa agagttgact gatgtcacag
     2641 atcccactgg tgtcctggca tcatcttctc atctatccat gcctacccac ctacagcaac
     2701 aatgactgtt ttctacagac gccatcgttc ccagaggatt gctctgggtc acatggagac
     2761 aggtgcatct gggacctcct ggcctgaggt ccgtcctcct cttcatgaaa tcaagatata
     2821 ctatattgtt gctctctgct ctccaaccgt ctaagctgga ccctgtctcc agttggcttt
     2881 gccccccaca acccctactc acatacttat cttgctttct ttgtctccta ctctccggag
     2941 agcaactcac aataaactcc aagtttccaa ggctgcaaaa aaaaaaaaaa aaaaaaaaaa
     3001 aaa
//
