LOCUS       NM_001402362            3596 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus SRY-box transcription factor 21 (Sox21), mRNA.
ACCESSION   NM_001402362 XM_008770942
VERSION     NM_001402362.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3596)
  AUTHORS   Chakravarthy,H., Ormsbee,B.D., Mallanna,S.K. and Rizzino,A.
  TITLE     Rapid activation of the bivalent gene Sox21 requires displacement
            of multiple layers of gene-silencing machinery
  JOURNAL   FASEB J 25 (1), 206-218 (2011)
   PUBMED   20876214
REFERENCE   2  (bases 1 to 3596)
  AUTHORS   Kiso,M., Tanaka,S., Saba,R., Matsuda,S., Shimizu,A., Ohyama,M.,
            Okano,H.J., Shiroishi,T., Okano,H. and Saga,Y.
  TITLE     The disruption of Sox21-mediated hair shaft cuticle differentiation
            causes cyclic alopecia in mice
  JOURNAL   Proc Natl Acad Sci U S A 106 (23), 9292-9297 (2009)
   PUBMED   19470461
REFERENCE   3  (bases 1 to 3596)
  AUTHORS   Hwang,C.K., Wu,X., Wang,G., Kim,C.S. and Loh,H.H.
  TITLE     Mouse mu opioid receptor distal promoter transcriptional regulation
            by SOX proteins
  JOURNAL   J Biol Chem 278 (6), 3742-3750 (2003)
   PUBMED   12446692
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000015.1.
            
            On Mar 11, 2022 this sequence version replaced XM_008770942.2.
            
            ##Evidence-Data-START##
            Transcript is intronless :: LC373152.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-3596              JAXUCZ010000015.1  101699580-101703175 c
FEATURES             Location/Qualifiers
     source          1..3596
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /map="15q24"
     gene            1..3596
                     /gene="Sox21"
                     /note="SRY-box transcription factor 21"
                     /db_xref="GeneID:306168"
                     /db_xref="RGD:1304724"
     exon            1..3596
                     /gene="Sox21"
                     /inference="alignment:Splign:2.1.0"
     CDS             1386..2216
                     /gene="Sox21"
                     /note="SRY-box containing gene 21; SRY (sex determining
                     region Y)-box 21; SRY box 21"
                     /codon_start=1
                     /product="transcription factor SOX-21"
                     /protein_id="NP_001389291.1"
                     /db_xref="GeneID:306168"
                     /db_xref="RGD:1304724"
                     /translation="MSKPVDHVKRPMNAFMVWSRAQRRKMAQENPKMHNSEISKRLGA
                     EWKLLTESEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKPKTLLKKDKFAFPVPYGLGS
                     VADAEHPALKAGAGLHAGAGGGLVPESLLANPEKAAAAAAAAAARVFFPQSAAAAAAA
                     AAAAAAGSPYSLLDLGSKMAEISSSSSGLPYASSLGYPTAGAGAFHGAAAAAAAAAAA
                     AGGHTHSHPSPGNPGYMIPCNCSAWPSPGLQPPLAYILLPGMGKPQLDPYPAAYAAAL
                     "
ORIGIN      
        1 cggccgcggc tggacatgca cacccagcgc ccgctgccgg cgccgacact cgcaggtggc
       61 gacactcacc tgagccggtc tgcagtcgcc tcgggagcgg cggagcgaca gcctgggccc
      121 ggaaggggcc cgaagcaggg agagcaggag cggccccagc gcggacctgc gatctgaggt
      181 gatagcacgt tttctttaac ccccgtcctt caggacctgg atccccgcac ccatccagcc
      241 cgcggcgccc ggagcagccg ggacagaggg gctcggtggc gcggcaccca cgcgggcgca
      301 cgctccgagg cgcgctcacc gagaggggcg cggctgagcc ggggccggaa acttaggaga
      361 agttagttgt aagtgtctcg gctgcagcga ccggagcggg gaggagaagg cgcccgggcc
      421 tggcccgccg cgctgcaacg aaccaccctc cactcctggg gtgctccgga agcctgagac
      481 agtcagcgcg cccgggggag ctgggagcca aaggaacaag catggcccgg gggacagcct
      541 ggagcagcga gtcggagaac ccggacagtc tccactgagg ccaggagact caagctaact
      601 taaaacctca gcctgcttcc ttcctcgcct ctcctgcgcc aaagccgggg agcaagcctc
      661 tccaggcagg tgcccgggga cagcgcctgc cctcagcgta gctgtaggat tggggggttc
      721 atcagagcgc cctgaccccg acacagaaga ccggccactg cagtgtttgt ctttccgtcc
      781 ctcgccttgc tccgggctcc cagaccctcc ccctcctctt cctcttcgcg gccacccctc
      841 ccccactccc atctgcttct gtcaaacgag aaagtcaccg gggagaaccc aaacactcca
      901 gccgccgaga gccccctttg gcacttggca gcacgcggcg gtgggctccg aggctcaact
      961 tggtggatcc tccatcgctc aactttccgg actgcttggc gtttaaggct ttgaagacgg
     1021 aggagagggg agagctgaac caggcagtgg ccacctgcag ggagttggcg agccaaagca
     1081 acgggacaga aggacaaaaa gcagagggca aagtgccacc gcggagtggg gacaccgagg
     1141 agaagttcca gggtcccgga gaggattttt tcttagagct cggccagaca aaccaaagcg
     1201 gcctgggaca cagcgtcgcg gccctgggct ggtcgtctgg tcccctcttc ccgcgcggga
     1261 gctacgcggg gacgcacggc ctcccgctga gccggtcccc actgtcagcc aacattgatt
     1321 tcctccgggc ggaggccgag ggcccgggtg gcggcggcgg gctgcagccg cggctcggcg
     1381 acagcatgtc caagccggtg gaccacgtca agcggcccat gaacgccttc atggtgtggt
     1441 cgcgggctca gcggcggaag atggcccagg agaaccctaa gatgcacaac tcggagatca
     1501 gcaagcgcct gggcgccgag tggaagctgc tcaccgagtc ggagaagcgg ccgttcatcg
     1561 acgaggcgaa gcgcctgcga gccatgcaca tgaaggagca tccggactac aagtaccggc
     1621 cgcggcgcaa gcccaagacg ctgctcaaaa aggacaagtt cgccttcccg gtgccctacg
     1681 gcctgggcag cgtggcggac gccgagcacc cggcgctcaa ggcgggagcc gggctgcacg
     1741 cgggcgcggg cggcggcctg gtacccgagt ctctgctcgc gaaccccgag aaggcggccg
     1801 ccgccgccgc cgctgccgcc gcgcgcgtct tcttcccgca gtccgccgcc gccgccgctg
     1861 ctgccgccgc cgccgccgct gcgggcagcc cctactcgct ccttgacctg ggctccaaga
     1921 tggcagagat ctcgtcgtcg tcgtccggcc tgccatacgc gtcgtcgctg gggtacccca
     1981 cggcgggcgc gggcgccttc cacggggcgg cggcggcggc tgcagcggcc gcggcggccg
     2041 ccggggggca cacgcactcg caccccagcc cgggcaaccc gggctacatg atcccgtgca
     2101 actgcagcgc gtggcccagc ccggggctgc agccgccgct cgcctacatc ctgttgccag
     2161 gcatgggcaa gcctcagctg gacccctacc ccgcggccta cgcggccgcg ctatgacccc
     2221 tgcggtgacc tgtgcacaca cgtgtacata tgtataggta cgagactcgc ggccttccgc
     2281 tgcgccctcg ggcgaccggg ggcccggttt gtatgtacat agatgtatag gtgtcaggca
     2341 gaggcggagg tgccagtccg ggcttgagag gccgagccct cgagggcgcg ggcgagagtg
     2401 tgcgtggctt cgcaggatca ttccccagcc gcacttctgc agccaacttt taaggagagc
     2461 ggttgttagc gccagcagtt ggtgtttgct ttgcacttcg gaacctgttg cgttttgacc
     2521 cacggaggtg gaggagaaac tttatgacat gttgggcttt ccagttttgt tggttggatt
     2581 ttgctttttg cgtttcatcc ttcctctccc cggtcccact tggtccctgt tgcatgcgct
     2641 cggttctgat gttcggtctg aaatagctgg ccaaggggag agccggtgtc tttagcctct
     2701 tagagtaggg tggctcgggg ctgccttact ccgcgattat accttgaatt ctgcagacct
     2761 ctgcagaaca ctccccggat ctattcttga ccagtgagtg accagctcga atccggcctt
     2821 ttgtatgaga catgatcacc gttccttttg tttcatccca tgtgcaaatc aaagcaagac
     2881 cttttatttt ccttcttctc cccaagaaca agaaatgcaa aaaaaaaaaa aaaatacgtg
     2941 tgaggtggaa gttcggtaat ctacccctga attatctact agaagtctct ctgagtccgc
     3001 tggcttggac ttgtgatgca gtttacgaac gtgtggaaag tacacatgct atttcccctc
     3061 aaggctgagt tcaccttacg attgtaaatg tgtgtgtgtc agtgaaaaca ttgagccttg
     3121 ggaaatgcgt tattttcgtt gccctaaatt tgagtcggtt ttggactcaa tacatgttga
     3181 acaaatgtca aagttaactt ttaagaattg cggaactttc agaatcgcaa ttttatctaa
     3241 tattaaatca gacttttttg tctgggtcgt aattatatat ttattactta gcaaaactgg
     3301 aaaaaaaaac ccagaaagca tagaattgtt tttgaaagct gcctctcatc gactagtatt
     3361 cctctcccaa gctgaactgt ttttcagagt taccttccca tttcgcttat tttctaggcc
     3421 gcctgcaatt cacttgcaaa ttatgataaa acaacatttt aaaaaaattc ctcaaagtat
     3481 agcttttttg tttcttttca aatgtatata ttttgactaa tgtttgtgaa tgaagttgct
     3541 aacatgtatt tagtttcatt ttgactttat gtaagataaa gttttaaaag tttaaa
//
