LOCUS       NM_001394335            1133 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus SRY-box transcription factor 15 (Sox15), mRNA.
ACCESSION   NM_001394335 NR_172098
VERSION     NM_001394335.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1133)
  AUTHORS   Ng,C.K., Li,N.X., Chee,S., Prabhakar,S., Kolatkar,P.R. and Jauch,R.
  TITLE     Deciphering the Sox-Oct partner code by quantitative cooperativity
            measurements
  JOURNAL   Nucleic Acids Res 40 (11), 4933-4941 (2012)
   PUBMED   22344693
REFERENCE   2  (bases 1 to 1133)
  AUTHORS   Meeson,A.P., Shi,X., Alexander,M.S., Williams,R.S., Allen,R.E.,
            Jiang,N., Adham,I.M., Goetsch,S.C., Hammer,R.E. and Garry,D.J.
  TITLE     Sox15 and Fhl3 transcriptionally coactivate Foxk1 and regulate
            myogenic progenitor cells
  JOURNAL   EMBO J 26 (7), 1902-1912 (2007)
   PUBMED   17363903
REFERENCE   3  (bases 1 to 1133)
  AUTHORS   Yamada,K., Kanda,H., Tanaka,S., Takamatsu,N., Shiba,T. and Ito,M.
  TITLE     Sox15 enhances trophoblast giant cell differentiation induced by
            Hand1 in mouse placenta
  JOURNAL   Differentiation 74 (5), 212-221 (2006)
   PUBMED   16759287
REFERENCE   4  (bases 1 to 1133)
  AUTHORS   Maruyama,M., Ichisaka,T., Nakagawa,M. and Yamanaka,S.
  TITLE     Differential roles for Sox15 and Sox2 in transcriptional control in
            mouse embryonic stem cells
  JOURNAL   J Biol Chem 280 (26), 24371-24379 (2005)
   PUBMED   15863505
REFERENCE   5  (bases 1 to 1133)
  AUTHORS   Lee,H.J., Goring,W., Ochs,M., Muhlfeld,C., Steding,G., Paprotta,I.,
            Engel,W. and Adham,I.M.
  TITLE     Sox15 is required for skeletal muscle regeneration
  JOURNAL   Mol Cell Biol 24 (19), 8428-8436 (2004)
   PUBMED   15367664
REFERENCE   6  (bases 1 to 1133)
  AUTHORS   Sarraj,M.A., Wilmore,H.P., McClive,P.J. and Sinclair,A.H.
  TITLE     Sox15 is up regulated in the embryonic mouse testis
  JOURNAL   Gene Expr Patterns 3 (4), 413-417 (2003)
   PUBMED   12915303
  REMARK    Erratum:[Gene Expr Patterns. 2003 Dec;3(6):785]
REFERENCE   7  (bases 1 to 1133)
  AUTHORS   Beranger,F., Mejean,C., Moniot,B., Berta,P. and Vandromme,M.
  TITLE     Muscle differentiation is antagonized by SOX15, a new member of the
            SOX protein family
  JOURNAL   J Biol Chem 275 (21), 16103-16109 (2000)
   PUBMED   10821863
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Apr 13, 2021 this sequence version replaced NR_172098.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643299.43361.1,
                                           SRR22582419.2562638.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760386, SAMEA5760393
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-854               JAXUCZ010000010.1  54871793-54872646
            855-1133            JAXUCZ010000010.1  54873219-54873497
FEATURES             Location/Qualifiers
     source          1..1133
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q24"
     gene            1..1133
                     /gene="Sox15"
                     /note="SRY-box transcription factor 15"
                     /db_xref="GeneID:363632"
                     /db_xref="RGD:1312022"
     exon            1..854
                     /gene="Sox15"
                     /inference="alignment:Splign:2.1.0"
     CDS             328..984
                     /gene="Sox15"
                     /note="SRY-box containing gene 15; SRY (sex determining
                     region Y)-box 15; SRY box 15"
                     /codon_start=1
                     /product="protein SOX-15"
                     /protein_id="NP_001381264.1"
                     /db_xref="GeneID:363632"
                     /db_xref="RGD:1312022"
                     /translation="MALPGSSQAETWNLDSLVSTASLPLGPQEQEVGGGPGASGGLPL
                     EKVKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWKLLDDEEKRPFVEEAKR
                     LRARHLHDYPDYKYRPRRKSKNPGTGSVHFSQGGGGPVCGGPHWGPGYTTTQGSRGFG
                     YQPPNYSTAYMPGSYTSSHCRPEAPSPCTVPQSDPRLQGELIPSFPHYPSPGSPTPYI
                     "
     exon            855..1133
                     /gene="Sox15"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agcacctggt gagctcctgg cagctgtggg gactttgtgg agaccaagag ctgcggagca
       61 aggattgcag tctccacaga cgatccctgt ctcactgaag cagagggtag aaaagcgcga
      121 ctggtagact tgagagaaca ctacctcttc ggtaaggggt gccagacaag gaggattcat
      181 cttcccggtg acaatcgatc gctgggagca aagttcagat tcaagcgctc tggaagatac
      241 ttaagtaccc aactcttcag agtccagtct tcactctggg agaagggcat tcaagacacc
      301 ctctcaaaga ggctttacct tcaacccatg gcgctgcccg gctcctcaca agcagagact
      361 tggaacctgg attctctggt ttctacggcc tctttgccct taggacctca ggagcaggag
      421 gttggcggag gccctggagc gtctgggggg cttccgctag agaaagtgaa gcggcccatg
      481 aacgccttca tggtgtggag ctctgctcag cgccgccaga tggcgcagca gaaccccaag
      541 atgcacaatt ctgagatctc gaagcgcttg ggcgctcagt ggaagctgct ggacgatgaa
      601 gagaagagac ccttcgtgga ggaggctaag cgtcttcgtg cccgccacct ccatgactac
      661 cccgactaca agtaccgacc ccggcgaaaa agcaaaaacc cgggcaccgg gtcggtccat
      721 ttcagccagg gaggaggtgg cccggtatgt ggaggcccac actgggggcc ggggtacaca
      781 actacccaag ggagtagggg ctttgggtac cagcccccca actattcgac agcctacatg
      841 cctggcagtt acacctcttc ccattgcaga ccggaggccc cctcaccgtg tactgtccct
      901 cagagtgatc ctaggctcca aggggagcta ataccctcct tcccccacta cccatctcca
      961 ggctctccca ctccatatat ataatacttc ccttgctggt gcctccatgc cagtaaccca
     1021 cctttaactg gcacggacaa tcagggacaa ccccgaagac ccagcccttt cagttcagaa
     1081 ccctaggaac cagaatgcgc aattttgtat aattaaagca tgtttgagtc ttt
//
