LOCUS       NM_001105952            3563 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus SRY-box transcription factor 13 (Sox13), mRNA.
ACCESSION   NM_001105952 XM_001060642 XM_222636
VERSION     NM_001105952.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3563)
  AUTHORS   Brunmeir R, Wu J, Peng X, Kim SY, Julien SG, Zhang Q, Xie W and Xu
            F.
  TITLE     Comparative Transcriptomic and Epigenomic Analyses Reveal New
            Regulators of Murine Brown Adipogenesis
  JOURNAL   PLoS Genet 12 (12), e1006474 (2016)
   PUBMED   27923061
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3563)
  AUTHORS   Baroti T, Schillinger A, Wegner M and Stolt CC.
  TITLE     Sox13 functionally complements the related Sox5 and Sox6 as
            important developmental modulators in mouse spinal cord
            oligodendrocytes
  JOURNAL   J Neurochem 136 (2), 316-328 (2016)
   PUBMED   26525805
REFERENCE   3  (bases 1 to 3563)
  AUTHORS   Malhotra N, Narayan K, Cho OH, Sylvia KE, Yin C, Melichar H,
            Rashighi M, Lefebvre V, Harris JE, Berg LJ and Kang J.
  CONSRTM   Immunological Genome Project Consortium
  TITLE     A network of high-mobility group box transcription factors programs
            innate interleukin-17 production
  JOURNAL   Immunity 38 (4), 681-693 (2013)
   PUBMED   23562159
REFERENCE   4  (bases 1 to 3563)
  AUTHORS   Flister MJ, Hoffman MJ, Reddy P, Jacob HJ and Moreno C.
  TITLE     Congenic mapping and sequence analysis of the Renin locus
  JOURNAL   Hypertension 61 (4), 850-856 (2013)
   PUBMED   23460292
REFERENCE   5  (bases 1 to 3563)
  AUTHORS   Turchinovich G and Hayday AC.
  TITLE     Skint-1 identifies a common molecular mechanism for the development
            of interferon-gamma-secreting versus interleukin-17-secreting
            gammadelta T cells
  JOURNAL   Immunity 35 (1), 59-68 (2011)
   PUBMED   21737317
REFERENCE   6  (bases 1 to 3563)
  AUTHORS   Melichar HJ, Narayan K, Der SD, Hiraoka Y, Gardiol N, Jeannet G,
            Held W, Chambers CA and Kang J.
  TITLE     Regulation of gammadelta versus alphabeta T lymphocyte
            differentiation by the transcription factor SOX13
  JOURNAL   Science 315 (5809), 230-233 (2007)
   PUBMED   17218525
REFERENCE   7  (bases 1 to 3563)
  AUTHORS   Wang Y, Ristevski S and Harley VR.
  TITLE     SOX13 exhibits a distinct spatial and temporal expression pattern
            during chondrogenesis, neurogenesis, and limb development
  JOURNAL   J Histochem Cytochem 54 (12), 1327-1333 (2006)
   PUBMED   16835393
REFERENCE   8  (bases 1 to 3563)
  AUTHORS   Kasimiotis H, Myers MA, Argentaro A, Mertin S, Fida S, Ferraro T,
            Olsson J, Rowley MJ and Harley VR.
  TITLE     Sex-determining region Y-related protein SOX13 is a diabetes
            autoantigen expressed in pancreatic islets
  JOURNAL   Diabetes 49 (4), 555-561 (2000)
   PUBMED   10871192
REFERENCE   9  (bases 1 to 3563)
  AUTHORS   Kido S, Hiraoka Y, Ogawa M, Sakai Y, Yoshimura Y and Aiso S.
  TITLE     Cloning and characterization of mouse mSox13 cDNA
  JOURNAL   Gene 208 (2), 201-206 (1998)
   PUBMED   9524265
REFERENCE   10 (bases 1 to 3563)
  AUTHORS   Roose J, Korver W, Oving E, Wilson A, Wagenaar G, Markman M, Lamers
            W and Clevers H.
  TITLE     High expression of the HMG box factor sox-13 in arterial walls
            during embryonic development
  JOURNAL   Nucleic Acids Res 26 (2), 469-476 (1998)
   PUBMED   9421502
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473958.2.
            
            On or before Oct 3, 2007 this sequence version replaced
            XM_001060642.1, XM_222636.4.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN06621351,
                              SAMN16676787 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3563
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13q13"
     gene            1..3563
                     /gene="Sox13"
                     /note="SRY-box transcription factor 13"
                     /db_xref="GeneID:289026"
                     /db_xref="RGD:1309674"
     exon            1..343
                     /gene="Sox13"
                     /inference="alignment:Splign:2.1.0"
     exon            344..542
                     /gene="Sox13"
                     /inference="alignment:Splign:2.1.0"
     CDS             345..2183
                     /gene="Sox13"
                     /note="SRY-box containing gene 13; SRY (sex determining
                     region Y)-box 13; SRY box 13"
                     /codon_start=1
                     /product="transcription factor SOX-13"
                     /protein_id="NP_001099422.1"
                     /db_xref="GeneID:289026"
                     /db_xref="RGD:1309674"
                     /translation="MSVQSPVSVQLAPDSASTMVNCTVKSEEKKEPCHEAPQGTATAV
                     EPQPGDPALASQDATNSKAPAQDCASPQSSGSPDPKRPAASEAASGSQERLDFNRNLQ
                     EVVPAIEKLLSSDWKERFLGRSSVEAKDVKGTQESLAEKELQLLVMIHQLSALRDQLL
                     TAHSEQKNMAAMLFEKQQQQMELARQQQEQIAKQQQQLIQQQHKINLLQQQIQVNMPY
                     VMIPAFPSSHQPLPVTPDSQLALPIQPIPCKPVEYPLQLLHSPPAPVVKRPGVATHHP
                     LQEPPQPLNLTAKPKVSELPNTSSSPSLKMNSCGPRPSSHGAPTRDLQSSPPNLPLGF
                     LGEGDAVTKAIQDARQLLHSHSGALENSPSAPFRKDLISLDSSPAKERLEENCVHPLE
                     EAMLGCDVDGSRHFSESRNSSHIKRPMNAFMVWAKDERRKILQAFPDMHNSSISKILG
                     SRWKSMTNQEKQPYYEEQARLSRQHLEKYPDYKYKPRPKRTCVVEGRRLRVGEYKALM
                     RTRRQGARQSYAIPPQAGQAQVSSDILFPRAAGMPLARPLVEHYDPQGLDPNMPVIIN
                     TCSLREEGEGTDDRHSVADGEMYRYSEDEDSEGDEKSEEELVVLTD"
     exon            543..654
                     /gene="Sox13"
                     /inference="alignment:Splign:2.1.0"
     exon            655..741
                     /gene="Sox13"
                     /inference="alignment:Splign:2.1.0"
     exon            742..914
                     /gene="Sox13"
                     /inference="alignment:Splign:2.1.0"
     exon            915..983
                     /gene="Sox13"
                     /inference="alignment:Splign:2.1.0"
     exon            984..1095
                     /gene="Sox13"
                     /inference="alignment:Splign:2.1.0"
     exon            1096..1178
                     /gene="Sox13"
                     /inference="alignment:Splign:2.1.0"
     exon            1179..1341
                     /gene="Sox13"
                     /inference="alignment:Splign:2.1.0"
     exon            1342..1451
                     /gene="Sox13"
                     /inference="alignment:Splign:2.1.0"
     exon            1452..1548
                     /gene="Sox13"
                     /inference="alignment:Splign:2.1.0"
     exon            1549..1692
                     /gene="Sox13"
                     /inference="alignment:Splign:2.1.0"
     exon            1693..1909
                     /gene="Sox13"
                     /inference="alignment:Splign:2.1.0"
     exon            1910..3563
                     /gene="Sox13"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cggccgggag tccgggagcc ggactgcgga agggagcacg gctgcggcca gccgagggca
       61 gagggcagag tgccgagcgg cctggctcgg cggagggcgc cgcccgaccc gtcctcagct
      121 cggcgcccgc gacggtggcc agcggagcct ggcgggccgc ggatcctgag cgcttccagc
      181 ccacggtggg gggcgtgcct ccgcccggcc gcgccgcccc ggcccgctgc ccgccgcgtt
      241 gcctgggcat gtgagcggga aggccaggct gctggccgcc gggacgcact gaacaggagc
      301 cggagcacgg agttgcgacc ccgggccagc gcccgaccga ttagatgtcc gtgcagagcc
      361 ccgtctctgt gcagctggcc ccagacagcg ctagcaccat ggtgaactgc accgtcaagt
      421 ctgaggagaa gaaggagcct tgccacgaag ctccccaagg cacagccact gcagtggagc
      481 cccagcctgg agacccagcc ctggcctctc aggatgccac caactccaaa gcccctgctc
      541 aggactgtgc ctcaccacag agcagtgggt ccccagaccc caagagacca gcagcttccg
      601 aggctgcttc gggaagccag gagcggctgg acttcaaccg caacttacag gaagttgttc
      661 cagccattga gaagctgctg tccagtgact ggaaggagag gtttctggga agaagctctg
      721 tggaagctaa ggatgtcaaa gggacccaag agagcctggc tgagaaggag ctccagcttc
      781 tggtcatgat ccatcagctc tccgcccttc gggaccagct ccttacggcc cactctgagc
      841 agaagaacat ggctgccatg ctgtttgaga aacagcagca gcagatggaa ctggccaggc
      901 agcagcagga gcagatcgcc aagcaacagc agcagctgat tcagcagcag cacaagatca
      961 acctcctcca gcagcagatc caggttaaca tgccttatgt catgatcccg gcctttccct
     1021 caagtcacca gcctttgcct gtcactcctg actcccagct ggctttgccc attcagccca
     1081 ttccctgcaa gccagtggag tacccactgc agctgctgca cagcccgcct gcccccgtgg
     1141 tgaagaggcc tggggtggcc acccaccacc ccctgcagga gcccccacaa ccactgaacc
     1201 tcacagccaa gcccaaggtc tctgagctac ccaacacctc cagctctccc agcctgaaga
     1261 tgaacagttg tgggcctcgc ccctccagcc atggggctcc cacaagggat ctgcagtcca
     1321 gccccccgaa cctgcctctg ggcttccttg gggaagggga cgctgtcacc aaagccatcc
     1381 aggatgctcg gcaactgcta cacagccaca gtggggcctt ggaaaactcc cccagtgccc
     1441 cattccgaaa ggacctcatc agcctggact cctccccagc caaggagcgg ctggaggaga
     1501 actgtgtgca tcccctggag gaagccatgc tgggctgtga cgtggatggc tctcgccatt
     1561 tctccgagtc tcggaacagc agccacatca agagacccat gaatgccttc atggtgtggg
     1621 ccaaggatga gcggaggaaa attcttcaag ccttcccaga tatgcataac tccagcatca
     1681 gcaagatcct tggttctcgc tggaagtcca tgaccaacca ggagaagcag ccgtactacg
     1741 aggagcaggc ccgtctgagc cgacagcacc tggagaaata tcccgactac aagtacaagc
     1801 caaggcctaa acgcacctgt gtcgtggagg gccggcggct gcgagtgggc gagtacaaag
     1861 ccctgatgag gacacggcgc cagggtgctc gccaaagcta cgccatcccc ccgcaggctg
     1921 gccaggcaca ggtgagctca gatatcctgt tccctcgggc agcaggcatg cccttggcac
     1981 gtccactggt ggagcactat gacccccagg gcctggaccc caacatgcct gtcatcatca
     2041 atacctgcag tctccgggag gaaggggagg gcacagatga caggcactcg gtggccgatg
     2101 gagagatgta ccggtacagc gaggatgagg actcagaggg tgacgagaag agtgaggagg
     2161 agctggtggt actcacagac tgatcctcag ctagctgggc ctggcccgtc accgctgggg
     2221 gaagagaact tgttcccaac ccgacaggca cagccagcct tcctgaacta tgttggtact
     2281 tggactttgg gcgtgcccag gtaatgggtg aaaccgcgtt tgtagataca ttccccaggc
     2341 ggggctcctc ctcttcatca cacctccagg cacatctgag gagccaacgg cctggctggg
     2401 tgggattcac gtggctgtgg tgaaccaagc tggctgaggg ttttagccct tggggcgaat
     2461 ggcctgggac cactgggtgt ataccctcct gtatgtccac ccactcgagg ggatggcagg
     2521 gatatacctg tccccttaag gtcacatgct ttgtttccat tttgtctcgg cccaaaccag
     2581 ccatggtggg acaatatgtc tgccctagaa gctcccaggt cacccctgtg tcacctgggt
     2641 tactctgtac tctgtgcagt ctggctgtcc cgtctttgtc ttccaagtcc acgtgcctct
     2701 ggctgctgtg tgtctgtgcg cagctcacgt tgtcatccct ccactcttgg cggaaggtat
     2761 ttgctgggtg gtcactgtga gccaggcgtg ctggtgagat ccgtgatgtg tgtcttaatg
     2821 cttctctggg ggcttcttct gtgttccttt gtccccaaaa tgctacctct ttgtcagtct
     2881 ggtgtctcag gttctgtgta ttttctttcc atgtgcattt tctctcttcc tctgtctgtc
     2941 cctgctccct cccaccacac ctgctgtatc ttctgggtgt ttgtagggcc cagcctgccc
     3001 ctgggactgg cagtttcctg accccatgac ccctttcctc ccttctgact ttgccagtca
     3061 gttcccatgg agccattttt agctcctggg accgtgagag cgtgcctagg cctccaaggg
     3121 gctctgcccc aattcccaac ctgtgtcccc aggcatgggg gtcttttgtc agtgacagcc
     3181 ctgcagaggg gactccatgg cagctggtct ccatcccttc ttcatgagct tagggtgggt
     3241 tcttccctcc cccacctcgt cctggggaat gggctccact cgttataaat aagctttctg
     3301 gttgtgtacc aagaaaatca aagaccatca gcacccagct tcaaagatct ggagctgccc
     3361 tgggtcaggg aaatgatccc aaaccccaca tggccgggcg cctccctccc cacctctgtt
     3421 gaccccattt ctctccagac tgtttctttt tatgactgta aacatagata gtgctttatt
     3481 ttgttactaa gaagataatg atgaataact taaccagcat atttgttttc tgatggtgta
     3541 ataaagaccg accatttcag aac
//
