LOCUS       XM_039104286            2013 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus sorbitol dehydrogenase (Sord),
            transcript variant X2, mRNA.
ACCESSION   XM_039104286
VERSION     XM_039104286.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2013
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2013
                     /gene="Sord"
                     /gene_synonym="SDH; XDH"
                     /note="sorbitol dehydrogenase; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 47 ESTs, 6 long SRA reads, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     59 samples with support for all annotated introns"
                     /db_xref="GeneID:24788"
                     /db_xref="RGD:3734"
     CDS             72..1031
                     /gene="Sord"
                     /gene_synonym="SDH; XDH"
                     /codon_start=1
                     /product="sorbitol dehydrogenase isoform X2"
                     /protein_id="XP_038960214.1"
                     /db_xref="GeneID:24788"
                     /db_xref="RGD:3734"
                     /translation="MHSVGICGSDVHYWEHGRIGDFVVKKPMVLGHEAAGTVTKVGPM
                     VKHLKPGDRVAIEPGVPREIDEFCKIGRYNLTPSIFFCATPPDDGNLCRFYKHSADFC
                     YKLPDSVTFEEGALIEPLSVGIYACRRGSVSLGNKVLVCGAGPIGIVTLLVAKAMGAS
                     QVVVIDLSASRLAKAKEVGADFTIQVAKETPHDIAKKVESVLGSKPEVTIECTGAESS
                     VQTGIYATHSGGTLVVVGMGPEMINLPLVHAAVREVDIKGVFRYCNTWPMAVSMLASK
                     TLNVKPLVTHRFPLEKAVEAFETAKKGLGLKVMIKCDPNDQNP"
ORIGIN      
        1 tcactccctc aggactgcac taggagaact acccaatccc tgagctgggc ccaaatgatg
       61 tgttactaaa gatgcattcg gtggggatct gtggctcgga tgttcactac tgggagcatg
      121 gccgaattgg ggacttcgtt gtgaaaaagc caatggtgct tgggcatgaa gctgctggaa
      181 cagtcacaaa agtgggaccg atggtgaaac atctaaaacc aggagatcgg gtggccatcg
      241 agcctggcgt tccccgagaa atagatgaat tctgcaagat cggccgatac aatctgacgc
      301 catccatctt cttctgtgcc acgcccccag atgatgggaa cctctgccgc ttctacaagc
      361 acagcgctga cttctgctac aagcttcctg atagtgtcac ctttgaagaa ggggccctga
      421 ttgagcctct ctctgtgggg atctatgcct gccgtcgagg ttcggtttcc ctggggaaca
      481 aggtccttgt gtgtggagct gggccaattg ggatagtcac tttgcttgtg gccaaagcaa
      541 tgggagcttc tcaagtagtg gtgattgacc tctctgcttc tcggttagcc aaggccaagg
      601 aagttggagc agactttacc atccaggttg ccaaagagac ccctcacgac attgccaaga
      661 aggtggaaag tgtgctgggg agcaagccag aggtcaccat cgaatgcacg ggagcggagt
      721 cctctgtcca gacgggcatc tatgccactc actctggcgg gaccttggtg gttgtgggaa
      781 tgggccccga gatgatcaat ttacccctag tgcacgcagc tgtgcgggag gtggacatca
      841 aaggcgtgtt tcgatactgc aacacgtggc cgatggcagt ttccatgctt gcatcgaaga
      901 ctttgaatgt aaagccctta gtgacccata ggttccccct ggagaaggct gtagaagcct
      961 ttgaaacagc caaaaaggga ctggggctga aagttatgat caagtgtgac cccaatgacc
     1021 agaaccccta aatgtgattg ctctatgccc ttagcccact ctctcagcat ctaagggcta
     1081 aatggaccag aaggggaagc cattaatgca gaaccttctt tttgaatggt aggaataata
     1141 aactcataag ccgagagcct tagaggagct ggcgtgcctt aaagacagaa gtaggggcac
     1201 cttgggggac ctcgtagcca gaatgagatg cgtatactga gtaaagtcta gaaccaagag
     1261 tctggcagag aggtcccgga aatgcccttt ctcagtacct tctttgggtg aggagacgaa
     1321 gcatgccttc gtccatgttc caatgtgggt gccagagagt ggggctaaca tggagaaatg
     1381 acgtcattaa catgggagtg gccccagagc tgttcagagc acagtgtttc ccaagtgtca
     1441 tttgatttga ggggaataag ggcactcagc tctgcctcag ctcagaattc tgtccttaca
     1501 tttgcaaagt ggaggccttc ttcccaacag tgctcattca tgttcaggag cagtactggt
     1561 tgctaagcaa ccaggagact tccacccaaa gatcctaaat ccagcctaac tcatacaaga
     1621 gggccacagg agggcttgag tttcccactc acaggattcg cctcctctcc caggctcact
     1681 cctaggcaat tattatccca tcccactcag aagatgctcc ccttctcggc tgttaaggct
     1741 agtgatatct gatggatggg tatcacagag cctaattaaa ttatggggct tttctttata
     1801 agatctgggt ccaaatcatg ccctttgtga tcttaagata atcaagaaga gcacagtaac
     1861 tgtggtgtaa cttgggctgc agtctgtaat ccacctcttc agctatgagt aggggacacg
     1921 tgaaaaaaaa aagactctgc tggagaagac catggccaac acctgagctt tctcaaactg
     1981 cttccaatag taaattctgt cgctggtgtt gaa
//
