LOCUS       XM_017589873            4460 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus SOGA family member 3 (Soga3),
            transcript variant X3, mRNA.
ACCESSION   XM_017589873
VERSION     XM_017589873.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017589873.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017589873.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4460
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4460
                     /gene="Soga3"
                     /note="SOGA family member 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 13
                     ESTs, 6 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 66 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:108349256"
                     /db_xref="RGD:11479453"
     CDS             1072..3906
                     /gene="Soga3"
                     /codon_start=1
                     /product="protein SOGA3 isoform X1"
                     /protein_id="XP_017445362.1"
                     /db_xref="GeneID:108349256"
                     /db_xref="RGD:11479453"
                     /translation="MSQPPSGGAAPAATSASAAAAATEARMHPEGSSRKQQRAQSPAR
                     PRDNSLRQAAGAARSPLGVGPKLNSVRQQQLLQQQQQGNKTTGRGASGAGSRGYGGGA
                     EKAAPSLPKGAAPGAVQPAPGAEGSPAAIPGAVSCRRSGLPVEPPQEIESGPSKVGEP
                     PPLGGGGGGGEGGGAGGGPGDREGGAPQPPPPRGWRGKGVRASQRGISGEGVSPSPPT
                     AATSRTPGPGSRNSGSGGTGGGSGGGGSYWKEGCLQSELIQFHLKKERAAAAAAAAQM
                     HTKNGGGGSRNSPVAGAPAICEPLVVPSFSPMAAAAEGPQQSAEGSSSAGAMQAAAPP
                     STQPHSQQLQEQEDMQEEMEKLREENETLKNEIDELRTEMDEMRDTFFEEDACQLQEM
                     RHELERANKNCRILQYRLRKAERKRLRYAQTGEIDGELLRSLEQDLKVAKDVSVRLHH
                     ELENVEEKRTTTEDENEKLRQQLIEVEIAKQALQNELEKMKELSLKRRGSKDLPKSEK
                     KAQQTPTEDDNEDLKCQLQFVKEEAALMRKKMAKIDKEKDRFEHELQKYRSFYGDLDS
                     PLPKGEAGGPPSTREAELKLRLRLVEEEANILGRKIVELEVENRGLKAELDDLRGDDF
                     NGSSNPLMREQSESLSELRQHLQLVEDETELLRRNVADLEEQNKRITAELNKYKYKSS
                     GHDSSRHHDSAKTEALQEELKAARLQINELSGKVMQLQYENRVLMSNMQRYDLASHLG
                     IRGSPRDSDAESDAGKKESDDDSRPPHRKREGPIGGESDSEEVRNIRSLTPTRSFYPT
                     PGPWPKSFSDRQQMKDIRSEAERLGKTIDRLIADTSTIITEARIYVANGDLFGLMDEE
                     DDGSRIREHELLYRINAQMKAFRKELQTFIDRLEVPKSADDHGAEEPISVSQMFQPII
                     LLILILVLFSSLSYTTIFKLVFLFTLFFVL"
ORIGIN      
        1 ttgccctaaa ttaatcgttt ctcggtatct tctcaagaac cctttgtttg tgggacggcg
       61 ggtctgtgga gctttgtcta ttcgtggaaa tgccacccca ggactccgcc cgagctgggg
      121 gtggggaagg agcccggcga gaagagatcg actgagcatt aaagtgagtg aacaaagaga
      181 agtcccggaa gcgcgcgcca gcgcctctcg gagctgcatc aagagactcc gctgggtcag
      241 actgaggatg caggcagctc caaccggcct cccaaggaaa atagcgcaag taaataattg
      301 atggagattg atcggacccg agacaaagct ttgcaggaag ccaatgcatc cgattctaag
      361 cggttttgga gtcttctgcc aattgcagga aatggagaga ggaatttgat gagccccgct
      421 gataaatctg catcttgggc gtggctctgg cctttttgtc tttttgcctc ccacccgcaa
      481 ctccagttcc ccattctcac cttctctttt ctgtttaaat aaccactccg gttacttctc
      541 tcctgtcttc ccttcaatcc cgccctcttt ccagcccagt ccggtgaggt cagctcatga
      601 ataccgctgc acttcctggg gagcgtctgg cactgcttgg caccccgggt attgcctgct
      661 gcatttgcag cccagccaac caagcatcgc cgccggcttc ctagctccca gagctccgag
      721 tctttgtggt taccgccttt gttcggagaa accgagtggg tgtggatcca gtgcaagcaa
      781 gcgtgcccag cgagaaattc acctataaca ctacgaactt gaactttctc tggaaggtag
      841 aaaattaaat tcggaggtct ccggaaaacc aggaggaagg cagtgttgtt ggtttgcatc
      901 aacttcctgg aagcaaaagc cactacagag aagtgagatc ttctggattt ctaaagagat
      961 gacgatgaga aacgggcttg cccaggaagg ttggtggcag gaaggagaga agaggatgat
     1021 ctagagatgg acgcttccaa gtggcatcca gtaggttctc tttagactgc catgagtcag
     1081 ccaccatccg ggggcgctgc cccagccgca acctcagctt ctgccgccgc cgcagccacg
     1141 gaggctcgca tgcacccgga gggcagcagc agaaagcagc agcgagctca atcacctgct
     1201 aggcctaggg acaattctct ccgacaggcc gccggggctg cgcggtcgcc gcttggggtc
     1261 ggccctaaac tcaattctgt tcggcagcag cagctgctgc agcagcaaca gcagggtaac
     1321 aagacaaccg gtcgaggcgc ctccggggcg ggctctagag gatacggagg aggggcggag
     1381 aaggcggcgc cctcgctacc aaaaggggct gctcccggag ctgtccagcc ggcgcctggt
     1441 gctgaagggt cccccgcggc gatcccaggg gctgtgagct gcaggaggtc tggactgcct
     1501 gtggagccac cccaggaaat agaatcgggg ccctcgaaag tcggggaacc ccctccgctc
     1561 gggggaggag gagggggcgg agaaggagga ggagccggtg gtggcccggg ggaccgggag
     1621 gggggcgctc cgcagccgcc gccgcccaga ggttggcgag ggaaaggcgt ccgcgcttcg
     1681 cagaggggta ttagcgggga gggagtctcc ccttcgccac ccaccgccgc tacaagcaga
     1741 acccccggcc cgggcagcag aaactccggg agcggcggca cagggggcgg cagcggtggt
     1801 ggagggagct actggaagga gggatgtctg cagtctgagc tcatccagtt ccatctcaag
     1861 aaggagcggg ctgctgcggc ggcggccgcg gctcagatgc acactaaaaa cggtggcggc
     1921 ggtagccgca attccccggt cgccggagct cctgccatct gtgagcccct ggtggtcccc
     1981 tccttctccc caatggcggc tgccgccgag ggcccccagc agagcgcaga gggcagcagc
     2041 agcgccgggg ccatgcaggc ggctgcccca ccttcgaccc agccgcactc gcagcagctc
     2101 caagagcagg aagatatgca ggaggagatg gagaagctgc gggaagagaa cgagactctc
     2161 aagaacgaga tcgatgagct gaggaccgag atggacgaga tgagggatac tttcttcgag
     2221 gaggatgcct gtcagctgca ggaaatgcgc catgaattgg agagagccaa caaaaactgc
     2281 cggattctgc agtaccgcct ccgcaaagcc gagcgcaaaa ggctccgcta cgcgcagacc
     2341 ggggaaattg acggcgagct gttgcgcagc ctggagcagg atctcaaggt tgcaaaggat
     2401 gtatctgtga gacttcacca tgaattggaa aatgtggaag aaaaaaggac cacaacagaa
     2461 gacgaaaatg agaaactgag gcagcagctt atagaagtag aaattgcgaa gcaagcctta
     2521 cagaacgaac tggaaaaaat gaaggagtta tccttaaaaa gaagaggaag taaagatttg
     2581 ccaaaatcgg aaaaaaaggc tcagcagaca cccacagagg acgacaatga ggatcttaag
     2641 tgccagctgc agttcgttaa ggaagaagct gccctgatga gaaagaaaat ggccaagatt
     2701 gacaaagaaa aggacagatt tgagcacgaa ctccagaagt acaggtcctt ctatggggat
     2761 ctagatagtc ctctacccaa aggagaagca gggggacctc ccagcaccag ggaggcagag
     2821 ctcaagctgc ggctgcggct ggtggaggaa gaggccaaca tcctgggcag gaaaatcgtg
     2881 gaacttgagg tggagaaccg aggcctgaag gcggaactag acgacctgcg gggcgacgat
     2941 ttcaatggct cttccaaccc actcatgagg gagcagagcg agtccttgtc ggagctgcga
     3001 cagcacctgc agctggtgga agacgagacc gagctgctgc ggaggaacgt ggctgacctg
     3061 gaggagcaga acaaacgcat cactgcggag ctcaacaagt acaagtacaa gtccagcggc
     3121 catgacagct cgaggcacca cgacagcgcc aagaccgagg ccctgcagga ggagctgaag
     3181 gcagcgcgcc tgcagatcaa cgagctgagc ggcaaggtca tgcagctgca gtatgagaac
     3241 cgcgtgctca tgtccaacat gcagcgctac gacctggcct cacatctggg tatccgtggc
     3301 agccctcgcg acagcgacgc cgagagcgat gcgggcaaga aggagagtga cgatgactcc
     3361 cggcctcccc atcgcaagcg cgaagggcca atcggaggcg agagcgactc agaggaggtg
     3421 cggaacatcc gctccctcac gcctacccgc tccttctacc caacacctgg gccctggccc
     3481 aagagcttct cagatcggca gcagatgaag gacatccgct ccgaggccga gcgcctgggc
     3541 aagaccatcg atcggctcat cgcagacaca agcaccatca tcaccgaggc gcgcatctac
     3601 gtggccaacg gggacctgtt tggactgatg gacgaggagg acgacggcag ccgcatccgg
     3661 gagcacgagc tgctctatcg catcaacgcg cagatgaagg ccttccgcaa ggagctgcag
     3721 accttcattg accgcctgga ggtgcccaag tctgcggatg atcacggcgc cgaggaaccc
     3781 atatccgtga gtcagatgtt ccagcctatc attctcctca ttctcatcct cgtcttgttc
     3841 tcatcccttt cttacacaac aatatttaaa cttgttttcc tttttacact gttttttgta
     3901 ctgtaaatct tccatcattt ctattcattg tagtgttttc agttgttttc attttgtcca
     3961 cccttcaaga caagacataa aggaagtatc atttctgtag taactgacgc tgtaaaaaaa
     4021 aaacactgaa gactgaatat ctctgtaaaa agacacaact gatcttacac tgtcaaattc
     4081 actaggaaac cccagcaacc aaagtgtttc aggtaaggaa aagtgagagt tgtcagagtt
     4141 ttgtgttaac tcatttttct gctgctttcc tttctatctt tctttctttg cactcctgat
     4201 tcagagctga caggttgacc ctgaaaatag actaagtttc ataattgctc tgtaggaact
     4261 gagtattatt ttacacctgg aaatttttag ttggttgcat tttcagagtt tatgtacagg
     4321 cattacgaag cataagccaa tgtagatgtt ttataaatta tcgctgatat aaattatgta
     4381 gatgtataag tatgctgttt ctcatgttag atgaaaagaa aagcgtcagt gtttaataaa
     4441 tatctgtgga aaacatgaaa
//
