LOCUS       XM_006247484            7293 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus suppressor of cytokine signaling 7
            (Socs7), transcript variant X1, mRNA.
ACCESSION   XM_006247484
VERSION     XM_006247484.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 9, 2024 this sequence was replaced by
            NM_001427009.1.
            
            On Jan 21, 2021 this sequence version replaced XM_006247484.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7293
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7293
                     /gene="Socs7"
                     /note="suppressor of cytokine signaling 7; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 84 ESTs, 2 long SRA reads, 6 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 115 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:287659"
                     /db_xref="RGD:1307720"
     CDS             202..2130
                     /gene="Socs7"
                     /codon_start=1
                     /product="suppressor of cytokine signaling 7 isoform X1"
                     /protein_id="XP_006247546.3"
                     /db_xref="GeneID:287659"
                     /db_xref="RGD:1307720"
                     /translation="MQGAELRDGEAAAAAASYRVLSRLLGYGEAAPEPGPPPPPPGHG
                     PPPPPFLARPGSRGARPPQLMVFRNVGRPPEEEDAEAAPEPGPSELLCPRHRCALDPK
                     ALPPGLALERTWGPVAGLEAQLAALGLGQPAGPGIKTAGGGCCPCPCPPQPPPPQPPP
                     PAAAPQAGEDPTETSDALLVLEGLESEAESLETNSCSEEELSSPGRGGGVGGRLLLQP
                     PGPELPPVPFPLQDLVPPGRLSRGEQQQQQPPPPPPPPGPLRPLAGPSRKGSFKIRLS
                     RLFRTKSCNGGSGGGDGTGKRPSGDLAASAASLTDMGGSAVRELDAGRKPRLTRTQSA
                     FSPVSFSPLFTGETVSLVDVDISQRGLTSPHPPTPPPPPRRSLSLLDDISGTLPTSVL
                     VAPMGSSLQSFPLPPPPPPHAPDAFPRIAPIRASESLHSQPPQHLQCPLYRPDSSSFA
                     ASLRELEKCGWYWGPMNWEDAEMKLKGKPDGSFLVRDSSDPRYILSLSFRSQGITHHT
                     RMEHYRGTFSLWCHPKFEDRCQSVVEFIKRAIMHSKNGKFLYFLRSRVPGLPPTPVQL
                     LYPVSRFSNVKSLQHLCRFRIRQLVRIDHIPDLPLPKPLISYIRKFYYYDPQEEVYLS
                     LKEAQLISKQKQEVEPST"
ORIGIN      
        1 tcgggggcgg tcctcggcgg cggcgcgcgg cctgggctcg cgctgggctc cgcgcgcccc
       61 ccgccccctc tatgaggcag aggccgcggc ggccgttaga gctgtcgctc cgggggccgc
      121 ggcgggcggg gctccggcgg ggcccggcct agtccccacc cagcccggct cccagccgcc
      181 cgccctccct cccttacccc gatgcaaggg gccgagctcc gggacggcga ggcggcggcg
      241 gcggccgctt cgtaccgggt cctgagccgc cttctcggct atggagaggc ggcccccgag
      301 ccaggcccgc cgccgccgcc cccgggccat ggcccgccgc cgccaccctt cctcgcgcgg
      361 cccggctcgc ggggcgcccg gccgccgcag ctgatggtgt tccgcaacgt ggggcggccg
      421 ccggaggagg aggacgcgga ggcggccccg gagccgggac cctcggaact gctgtgtccc
      481 cgacaccgct gtgcgctgga tcccaaggcc ctcccgccgg gcttggcgct cgagcggacc
      541 tggggtccgg tggctggact agaggcgcag ctggcggcac tggggctcgg acagccggcg
      601 gggccgggga tcaagactgc gggcggaggc tgctgtccgt gcccgtgccc cccgcagccg
      661 ccgccgccgc aacccccgcc gcctgctgcc gccccgcagg ccggggaaga ccccacggag
      721 acgagcgacg cgctgctggt cctggaaggc ttggaatcgg aggccgaaag cctggagact
      781 aacagctgct cggaagagga gctcagcagc ccgggccgtg gaggaggagt gggtggccgg
      841 ctgctgctgc agcctccggg ccccgaacta cccccggtgc cctttccgct gcaggacttg
      901 gtccctccag ggcgcctgag ccgaggggag cagcagcagc agcaacctcc cccaccgccg
      961 ccgcctcccg ggccccttcg gccgctcgca ggcccttctc gaaagggctc cttcaaaatc
     1021 cgcctcagcc gcctgtttcg cacgaagagc tgcaacggtg gctcgggcgg tggggatggg
     1081 accggcaaga ggccttcggg agatctggca gcttcagctg cgagcctgac agacatggga
     1141 ggctctgcgg tccgggagct ggatgcgggg aggaaaccca ggttgacaag aactcaaagt
     1201 gccttttctc cggtctcctt cagccccttg ttcacaggtg agacagtgtc gcttgtggac
     1261 gtggacatat ctcagcgggg cctgacctct ccacaccctc caactccccc tcctcctcca
     1321 agaagaagcc tcagcctcct agatgatatc agtgggacgc tgcctacatc tgtccttgtg
     1381 gctccgatgg ggtcttcctt gcagtctttc cccctacctc cgcctcctcc accccacgcc
     1441 ccagatgcat ttccccgaat tgctcccatc agagcatcag aatccctgca cagccagccc
     1501 ccccagcacc tccagtgtcc cctctaccgg ccagactcaa gcagctttgc agccagcctt
     1561 cgagagctgg aaaagtgtgg ctggtactgg ggaccgatga actgggaaga cgcagagatg
     1621 aaactgaaag ggaagccaga tggctctttc ctggtccgag acagctctga tcctcgttac
     1681 atcctgagcc tcagctttcg atcacagggt atcacccatc acactagaat ggagcactac
     1741 agagggactt tcagcttatg gtgccatccc aagtttgagg atcgctgtca gtcggtggtg
     1801 gagttcatta agagagccat catgcactcc aagaatggga aatttcttta tttcttgaga
     1861 tccagggtcc caggactgcc gccgactcca gtgcagctgc tctacccagt gtccaggttc
     1921 agcaatgtca agtccctcca gcatctgtgc agattccgga tccggcagct tgtccgaata
     1981 gatcacatcc cggatctgcc actgcctaaa cctctgatct cttacattcg aaagttctac
     2041 tactatgatc ctcaggaaga ggtgtacctg tccctaaagg aggcacagct catttccaaa
     2101 cagaagcaag aggttgagcc ttccacgtag cagcgagggc ccctgctgtt gaacacgaag
     2161 gcatttgatc gacaggctcc agtttgaaga accaaatgaa gctaccacaa aagaagagtc
     2221 tggaagaaag agaagaaagg gttgtgactc tcggcacaga ctttggtccc ctgtatccct
     2281 ggggcttgga agaagcacac aaccatcctc caagtggggc tccccactcc ccagccccac
     2341 gaaccccagg actagataag ctccttggaa aactggaaga agtcttaaca ctgtttcttt
     2401 tcagacgttt gttttagtat ttacgtttct cagtggaagg cagctggggt ctatacccat
     2461 tgaaatgaaa gtggtattgg ggatgagcag gtcaagcgaa aggtgggacg aggggggctg
     2521 gttgttcagc tggtgccaaa ggcagcattg aggctctttt cccatgaacc tggaggaagg
     2581 gctggggaag ccagagaagt ccagaagaag gaagttggaa gtttctgggg aaaggtgtct
     2641 gattctcatc tccagcttca ccaggagatg agagaagggt ggcaagtgag agaggaactg
     2701 ttcacgagga actggtcgtt ctgtttgctg aggactgctg gctcctgctc ctttcctttc
     2761 aaggtttaac aaacctgatt ccacaattgc ctctcttgga attggtgtgt gttttgttga
     2821 ctaaattcct taagctcagt gacctgaggc aaacctagtt ctccctccat cctcagtccc
     2881 ttaccctcag taactgtgta tttatttcac tttggtcaaa ccaacactcc tgctgcttct
     2941 gccagctgtg cagacagtgg tgttttcttg tcacgtggcc agttcagagc tccaatccta
     3001 ggctgccaag gcttccccca ccaccatcag caacctcacc ctggagcatg cttccagatt
     3061 ctttgtggca aagcatgccc acagctaagg agtcggtgtt accctgcctg tcagctagtg
     3121 aggaaatgtg gaggagttga gaaacagcta tggtgctcct agaggagcct gcatgtctca
     3181 gccttaacag gatttctgtc gtgcagaaaa ggcatggcat ctcatgatga taggctgctc
     3241 tgtgtcaccc cacccctgag gtggaggtgg caagggctcc ttcatctccc tgtgtttgtt
     3301 ctcacaaccc agacatgtcc tgcgtcagac cccgctgcct ttctcactgg gaacctgtca
     3361 gatgctagtt tgaaacctgc ctttgagatg gatgtggaag aagggaagga ctttggtgct
     3421 tgagtagtct gtgtctgaaa ctggccacgt ccagccatgg gccacatcag tttgctgttc
     3481 tacagagcta ctcaagacag acagtggggc tggtgggtgg gtcttcatta ctcccaaccc
     3541 tgtagtgttc cctcttgtgt gcctcagaag acaaagtaaa tatcatcact tttggggttc
     3601 ctgatggtag gagtgaagtc tgtgtctaag taacttagaa aactgtctta tctggaaggt
     3661 ggcctgtgtg ctccctctgt gcagggagtc accttcctcc tccttgagct aaacacagag
     3721 gtgtgctttc gcagctggct gtaaagaaat gagacccaga atgaactgtg tacgtgttag
     3781 tccagctcac ttctgacgtg tctcatggga cccctaacat cataaggtca ccattcggag
     3841 actggcacac ctgcaagttc cacctctgga gggtacagga cacttgtcat cttatagaaa
     3901 aggccattct gtaatggagc ccaaactcca gagtccacag aggtcttctt aatgtttgca
     3961 gttgagaggt tctttctccc atttcagccg cccatgatat aagaattagt tgtcaacccg
     4021 tgtttgcatt gtttgcatgg ctctgagcta ggtagtgtgg aaggacatgt gaggtagaag
     4081 acaagcccct gccccgaggg aactgtaagg tgactgttgc ccaagaaggg gttggagcag
     4141 cttcattgga gcagaccgtc aagggccatc ttcagatcga gcggcatgat cagggtagac
     4201 cacaggtagc tctgggagag ctctggtgat aaggctttgg gttgtaggtg aggacactgt
     4261 gacagagact caaactaaag tacagagcag aaatgtgtgg caagtgtgca gctgccttag
     4321 atcaacggca tcagagttct gcttgtcgga aacttcctaa tggctggaca ggtctgaagg
     4381 ctaaggggaa tgagggtgtg gtggaggaca aggccagaag tcaggaaaca cctctctagt
     4441 cctggggttc cctgtggaga gtttctagag tcaggtgcga agcagaccta cctgctccag
     4501 agcatggcgg cctctcgctt ctgtcccagg aaagcgagtt gcactgtgtt tatgagcctc
     4561 gatattcccg tcacaggcag ctggcctggc cctgcctctg caggatgggc tgcaaaacag
     4621 cagtgtggac acagctctag gaggcctggc ctgctgccca ggaggtcttg ttagaaggaa
     4681 tgagcaattg gggagagcag ttgagctgct gactgcactg tgtgctgcag gctgggggag
     4741 aagggtgcag gagcaaggcc agagggcact ggcctttcag cttttgctga tggtggggca
     4801 gtgctaatgg aaatgcagtc tgcagagggg actcaacttg tctttggtgg ttatgtgcca
     4861 gtcacaaact ggaaaggaaa ggcagtcact tctagagacc tgctgtggct ttctgaggtg
     4921 tggttggggg tgtcactact cccagactca gcctgtaaac cttcactcat aactgatcta
     4981 ctgtaacctt cctcaagacg ggtatgttga tgtaagctag tgacaactac tgctgcaacc
     5041 tgtggttact tgaaatgtgt gtctgtgctg gcagtgtagg catgagggag caggagcttg
     5101 gctgtgaggc caactgtcct gatttgattg tggtctagta ccaaggtgaa gtaaacgtgg
     5161 atagcagtgc cagcctctga gtccaagcag ggagttatgg gatggctaca cagaccctct
     5221 gatgcaggtc tctgaggact aggaaataat cggagtacag ccctacaagg gccccaggga
     5281 gccacccttt cagccttgct catgcctgct tgaagccagt aggaagtagg gacaggaaaa
     5341 cttccccagg caagatcttc ctcccttccc ttctcttgtt gcttttccct tacctttgag
     5401 cgcaggagtg agaggccagg tcagagagat ggaaagagcc acacaggtct agaattctgc
     5461 gtgagcgtgt gccctcgttt gtccgagtct tgtctgtggt tggggtgttg ggaccatttc
     5521 cactagtggg gactaggact cactttccac tttaagagaa tggcaatgcc cactgtgtgg
     5581 agggaagagc gtgagttaga cattttccct atgggaaccc tcttggtttg gtttgtgggg
     5641 agaggggagt ggatacatgg tttttatttc tagtcatcaa cacagctgtc cttacactaa
     5701 atctgtgcta ttgcatacat gtagccatct ttcttttcac tgcagcagtg tttatcagta
     5761 gttcaaaatg atttatttgc tcctggggag taaaactttt ttattaaaaa agaaaaaaga
     5821 aaaaaaaaaa agaaagaaag aaaggtgtgc cccttacgat agctgtagaa ttattgggcc
     5881 acaagagtca cgtctgccag tcccctatgg tcacccgtct gttttggcat tggagccctt
     5941 gtgcttcaat gtgtcagtgt gtgtgatggg gccttccttg aaaaagtgga gaacagcatc
     6001 ttgggagtga gattgggttt aatcactgag agggctcagg ggacgtggta ctgcagttga
     6061 aaatagagaa ctgagtctat aatctgccag agaaagggac ctttctttac atgcagattt
     6121 catgtgtcct tgatctttca ttgcttcctg gtgtcctagg taggggtcac ctagttttgg
     6181 tgtccctctt gtctttctgt cctttgtcct gtcccttccc acttcatcta cctcccagaa
     6241 agccaatcct gcatgctgag tttgtgacat gccttcactc catttcatct tgagagggtt
     6301 ttagagagtc cctggagttg ctccctgccc cactgatccc tcctcatagt gccaagaggc
     6361 atcaaggagc agacaagcag ccgggcagac agcaacatgg ctcgcagctg gactgcgaca
     6421 gcagctgctc ctggagacag atagggaaaa caagacactc ttcttcagcc cacttgggtg
     6481 tgacccctgc tgtgttcagt gggcaatggg ctgatctgac cactcctcca tccctggtgc
     6541 tcccaagagg gacaggcagg atccaggctc cgctctgggt aggccagaca ttaggatgcc
     6601 tgccccggtg ctgcctggca caggccctgc tgtgcattct ggtggttttt cagaaactcc
     6661 gtgctgaggg gtgtcagtct ggactcagtg gttgggggat cttcaccacc ggggagccgt
     6721 acccccacaa ccactctgtc ctgctaagcc acccctgccc tcctagccaa agtgtggcct
     6781 ggcttttgtc ttcccattta gtttcctcct ttattctccc tctgtgctta atttattaaa
     6841 atagttgctg tataatttat tttcataaag tataaaaaat aactaaatgg ttaaaataga
     6901 cttgcaggcc aatcttcaat gggggtgggt ctggggtggg ccggggagag ggagagatgt
     6961 tttgatataa acaaacaaat gcactttggg tgtgttttgg tatttttctg ggcatagagg
     7021 ggtgggtgtt gggatgtccc tgtagattag ttccagagtg gggtgtctgt aaatactgta
     7081 ctaataggca tgtgtgactc ttgtaaaggg acattagtag ctgctgcagg tcctgtttgg
     7141 aaaccctgtg tataattccc ggttttttgt aagtgtcagt gcgggagaca tttgactctt
     7201 gtgtttgtat ctccttttta tgattgctgt accgacccat gtctttttgg ggagggatga
     7261 aaagagattt gaaataaaaa tgtttagaaa tga
//
