LOCUS       XM_039098771            4284 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus sine oculis binding protein homolog
            (Sobp), transcript variant X6, mRNA.
ACCESSION   XM_039098771
VERSION     XM_039098771.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039098771.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4284
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4284
                     /gene="Sobp"
                     /gene_synonym="jcx1; RGD1560479; Sobpl"
                     /note="sine oculis binding protein homolog; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 23 ESTs, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:309860"
                     /db_xref="RGD:1560479"
     CDS             531..2348
                     /gene="Sobp"
                     /gene_synonym="jcx1; RGD1560479; Sobpl"
                     /codon_start=1
                     /product="sine oculis-binding protein homolog isoform X3"
                     /protein_id="XP_038954699.1"
                     /db_xref="GeneID:309860"
                     /db_xref="RGD:1560479"
                     /translation="MDIFYKETQANLPAGLCGTLHPHMESKAEGTGVQLLTPDSWNIP
                     LTDARRKAPSPVAAAGQSQGPGPSSSTTVSPSDTANCSVTKIPTPVPKSLPISETPSI
                     PPVSVQPPASIGPPLGVPPRSPPMVMTNRGPVPLPIFMEQQIIQQIRPPFIRGPPHHA
                     SNPNSPLSNPMLPGIGPPPGGPRNLGPTSSPMHRPMLSPHIHPPSTPTMPGNPPGLLP
                     PPPPGAPLPSLPFPPVSMMPNGPMPVPQMMNFGLPSLAPLVPPPTLLVPYPVIVPLPV
                     PIPIPIPIPHVNDSKPPNGFSSNGESFVPSAPGDSSAAGGKAGGRSLSPRDSKQGSSK
                     SADSPPGSSGQALSLAPSERGRGEVVDLTRRAASPAGAGGQPGFAGVLHGPQDGVIDL
                     TVGHRARLHNVIHRALHAHVKAEREPGAAERRTCGGCRDGHCSPPAAGDPGPGAPAGP
                     EAAAACNVIVNGTRSAPAEAKGAEPPPEQPPPPAPPKKLLSPEEPAVNELESVKENNC
                     ASNCHLDGEVTKKLMGEEALAGGDKSDPNLNNPADEDHAYALRMLPKTGCVIQPVPKP
                     AEKAAMTPCVISSPMLSAGPEDLEPPLKRRCLRIRNQNK"
ORIGIN      
        1 ttttctatgc ctcaccttta ttacatcata ttgatgggcc tccccagtat acaaggatgg
       61 ccggacaggg agaggacact cctacattca taaatcatgg actttcaact ctccaagcag
      121 acatgtagac aacagggagc aaaaacaatc aggcctagtg gtaacatttg aagagaaatt
      181 caaatatcta tttggaatat aagaagcatt cccctaagca gacgtcggac aaaaactaaa
      241 tgtgcatcgg aaggcatggg ttagaaagca ggtgcgaggt gcctgccctg cgtgagttcc
      301 tgtcctgact tccttcagtg atgaacagca atggggacgt gtgagctgaa taaacccacc
      361 ttgctttcgg gtcgtggggt tttgttggag cagatgcagg tttggtgctg atggaataaa
      421 aggtgtgtga ctggtgtaaa cacataaggc atacaaaaga atacctggat tttggggacg
      481 gggagagaag gcttcagttc tgcagtgcaa aatgtctcaa tcaatacaaa atggacattt
      541 tctacaaaga gacacaggcc aaccttccag ctgggctgtg cggcacgtta caccctcaca
      601 tggagagcaa agcagaaggc accggggtgc agctgctcac tccagactct tggaatatcc
      661 cgctaacaga tgctcggagg aaagccccct cccccgtggc tgcagctggc caaagccagg
      721 gccctggccc ctcctcgtcc accaccgttt ctccatctga cactgccaac tgctctgtca
      781 ctaaaatccc cacgccagtg cccaagtccc tccccatcag cgagactcca agcatccctc
      841 ccgtctcagt ccagccacct gctagcatcg gacctccact gggtgtcccg cctcgcagtc
      901 ctcccatggt gatgaccaac cgcggcccag tgcctctgcc catcttcatg gagcagcaga
      961 tcatccagca gatccgcccg cccttcatcc gtggcccacc gcaccacgcc tccaacccca
     1021 atagcccctt gtccaacccc atgctcccgg gcattgggcc cccgcccggt ggccccagga
     1081 acctaggccc cacttccagt cccatgcaca ggcccatgct ctcgccccac atccaccccc
     1141 caagtacccc taccatgcct gggaaccccc cagggctgct gcccccgccg cccccgggcg
     1201 cgcccttgcc cagccttccc ttccctccgg taagcatgat gccaaacggc ccgatgccgg
     1261 ttccccagat gatgaacttc gggctgccat cgctggcccc gctggtgccg cccccaacgc
     1321 tgctcgtgcc gtacccagtt atcgtgcccc tgccggtgcc catccctatc cctatcccta
     1381 tcccccacgt gaacgattcc aagcccccca acggattttc cagcaacggg gagagcttcg
     1441 ttccgagcgc cccgggcgac tcctcggcgg cgggaggcaa ggctggtgga cgctccttgt
     1501 ccccgcggga ctccaagcag ggctcttcca agtcagccga ctcgccgccc ggaagctccg
     1561 gccaggctct gagcctggcg ccctcggagc gcggtcgcgg ggaggtggtg gacctgaccc
     1621 ggcgcgcggc cagccccgcg ggcgcgggag gccagccggg cttcgcgggc gtgctgcacg
     1681 gcccgcagga cggcgtcatc gacctgaccg tgggccaccg agcccggctg cacaacgtga
     1741 tccaccgcgc gctgcacgct cacgtcaagg cggagcgcga gccgggagcc gcggagcgca
     1801 ggacctgcgg cggctgcagg gacggccact gcagcccgcc cgccgccggc gaccccggcc
     1861 cgggcgcccc cgcgggtccg gaggccgccg ccgcctgcaa cgtcatcgtg aacggcaccc
     1921 gcagcgctcc cgcggaggcc aagggcgcgg agcccccgcc cgagcagccg ccgccccctg
     1981 cccctcccaa aaagctgctg tcgcccgagg agcccgcggt gaatgagctg gagtcggtca
     2041 aggagaacaa ctgcgcttcc aactgccacc tggacgggga agtcaccaaa aaactgatgg
     2101 gggaggaagc cttggcgggg ggcgacaagt cagacccgaa ccttaataac cccgcggacg
     2161 aggaccacgc ctatgctctg cggatgctgc ccaagaccgg ctgcgtgatc cagcctgtgc
     2221 caaaacccgc agagaaggct gccatgacgc cgtgcgtcat ctcctcgccc atgctcagcg
     2281 ctggccccga ggacctggag ccgccgctca aaaggaggtg cctccgaatt agaaaccaga
     2341 ataagtaaaa aaaaaaagga acactcgctc ccagggtaca ttgcatggag agagggcgtg
     2401 gagcaaacca agtcatgcca tccaatgaca ccagctgctc agctcaccac ctcgctctgg
     2461 ctaaaactca agcaaataac acagcttccc gtcattaaac atcttggagg aagcagccct
     2521 ccctggtggc ctcaaggccg gagaagccag caggtcttgg acccatcaag cctgggccca
     2581 gcattcctgc ctacttcatc tcaattctcc ccagaagaac ttagggatat cgctggttta
     2641 aaaacaacaa caaaaagcaa aacaaaacac caacccgcca caaggaccaa tgtaggtatt
     2701 cttgccccca tcgtcaaggc tctacggatg aggctggagg atgacaggga ctggaaaata
     2761 agaacctttt ataaaaatct ttttaagaac tgctgtggtt tgctgctacg ataagaattg
     2821 tgagttgctt ttacagttta ggaacggaac tgttcacgtt ttttggtggg gagacgggat
     2881 ggtgctggag ttctcaatgc ctcagactca tctctgccca gcccacgatg cacttttaaa
     2941 tgaagaggta gaatatttta tcggctactc tacttttcat gttatttttt acaaaggcca
     3001 cctttatcct ttttgatgcc atattttcag tgttacactt ttatggcttt taattttcga
     3061 tctgccagat gtaggaagca gcatggatag tttatactgt ggttttaaca gagaccgaat
     3121 gccaagagaa ctcggtaaat gtttattctt ctcagctttc tcttgaaatg cccctaaata
     3181 gcgccccatt tgggaacaga gcaagagtgt tgaactgaag accaaaatgc cctcaaggtg
     3241 taatataatc tgagggggga atatttgctg ggcgtcagga aagactcgga tgaaatttca
     3301 accctgatgg ttttccgtgg tccaggaagt cagcgagaca atctctctct gcgcagagtc
     3361 ctttcatgat aattagaatg gtatggacga accgatgcaa acaagagaga aagtgagaaa
     3421 gatcgctgga ttctgtttca ctgtttgctt tctcctgtca tggttaagag aaatgtgcaa
     3481 ttcgatcctc aatcagtggg tggaggataa cagggtagat ttacttgtgt gcacttgtac
     3541 agttgtagct gcgagtccag aagtcctcta gaacatgtgt actggcactg agttgcagag
     3601 actgtcgtgg agtgccccag tctgatgagt acgaaaaaaa aaaaaagaaa agaaaagaaa
     3661 agaaaaaaaa tccccaaaaa agagaagaaa actttaaaaa aaaaatcaag tcaaatcacc
     3721 ttgtgattca gtgtatctgt ttactaactc aaataaaagc aattgttccc tctggagggg
     3781 tccaggtgcc ccgcccctcc aggtccccga gcctcagcag gagggtgaca gaaggcagga
     3841 gggcaggagg ggctggtgtc gtctcagctt cgcggctgca ctggggccgc ggatgcgtgt
     3901 acatactgta tttctatata cgcctttgta cagtcgagtc aagctactgt tttgcaggcg
     3961 ctccttattt attagagccg tgagagcttg ggggtggggg ggacacacct ggcgagcaag
     4021 ctcgcttttt aaacataaaa tggggggcaa gggaagggag gcgggaggga ggggttgctc
     4081 ataagcccag ggagagattt ataaaaggga acgaaaaaga aaaaaagaaa aaaaaaaaaa
     4141 aaacttccaa cgacaaacta aaccagctta cagcccacca ccaagccacg cccctacagg
     4201 aagttgccgc ccctctgggc actccttttc ctgccgtgtc agaatcatca gacaaataaa
     4261 tctctaagaa acgttagcag cgca
//
