LOCUS       XM_039098770            3984 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus sine oculis binding protein homolog
            (Sobp), transcript variant X5, mRNA.
ACCESSION   XM_039098770
VERSION     XM_039098770.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3984
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3984
                     /gene="Sobp"
                     /gene_synonym="jcx1; RGD1560479; Sobpl"
                     /note="sine oculis binding protein homolog; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 23 ESTs, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 37 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:309860"
                     /db_xref="RGD:1560479"
     CDS             231..2048
                     /gene="Sobp"
                     /gene_synonym="jcx1; RGD1560479; Sobpl"
                     /codon_start=1
                     /product="sine oculis-binding protein homolog isoform X3"
                     /protein_id="XP_038954698.1"
                     /db_xref="GeneID:309860"
                     /db_xref="RGD:1560479"
                     /translation="MDIFYKETQANLPAGLCGTLHPHMESKAEGTGVQLLTPDSWNIP
                     LTDARRKAPSPVAAAGQSQGPGPSSSTTVSPSDTANCSVTKIPTPVPKSLPISETPSI
                     PPVSVQPPASIGPPLGVPPRSPPMVMTNRGPVPLPIFMEQQIIQQIRPPFIRGPPHHA
                     SNPNSPLSNPMLPGIGPPPGGPRNLGPTSSPMHRPMLSPHIHPPSTPTMPGNPPGLLP
                     PPPPGAPLPSLPFPPVSMMPNGPMPVPQMMNFGLPSLAPLVPPPTLLVPYPVIVPLPV
                     PIPIPIPIPHVNDSKPPNGFSSNGESFVPSAPGDSSAAGGKAGGRSLSPRDSKQGSSK
                     SADSPPGSSGQALSLAPSERGRGEVVDLTRRAASPAGAGGQPGFAGVLHGPQDGVIDL
                     TVGHRARLHNVIHRALHAHVKAEREPGAAERRTCGGCRDGHCSPPAAGDPGPGAPAGP
                     EAAAACNVIVNGTRSAPAEAKGAEPPPEQPPPPAPPKKLLSPEEPAVNELESVKENNC
                     ASNCHLDGEVTKKLMGEEALAGGDKSDPNLNNPADEDHAYALRMLPKTGCVIQPVPKP
                     AEKAAMTPCVISSPMLSAGPEDLEPPLKRRCLRIRNQNK"
ORIGIN      
        1 aggctactca ggccttgcca ctgggaacgg actcagtgac tcgcctgcag ggtcaaagga
       61 ccatggcaat gtgcctatta ttgtcccttt aatcccacca cctttcataa agccgccagc
      121 aggtgtgtga ctggtgtaaa cacataaggc atacaaaaga atacctggat tttggggacg
      181 gggagagaag gcttcagttc tgcagtgcaa aatgtctcaa tcaatacaaa atggacattt
      241 tctacaaaga gacacaggcc aaccttccag ctgggctgtg cggcacgtta caccctcaca
      301 tggagagcaa agcagaaggc accggggtgc agctgctcac tccagactct tggaatatcc
      361 cgctaacaga tgctcggagg aaagccccct cccccgtggc tgcagctggc caaagccagg
      421 gccctggccc ctcctcgtcc accaccgttt ctccatctga cactgccaac tgctctgtca
      481 ctaaaatccc cacgccagtg cccaagtccc tccccatcag cgagactcca agcatccctc
      541 ccgtctcagt ccagccacct gctagcatcg gacctccact gggtgtcccg cctcgcagtc
      601 ctcccatggt gatgaccaac cgcggcccag tgcctctgcc catcttcatg gagcagcaga
      661 tcatccagca gatccgcccg cccttcatcc gtggcccacc gcaccacgcc tccaacccca
      721 atagcccctt gtccaacccc atgctcccgg gcattgggcc cccgcccggt ggccccagga
      781 acctaggccc cacttccagt cccatgcaca ggcccatgct ctcgccccac atccaccccc
      841 caagtacccc taccatgcct gggaaccccc cagggctgct gcccccgccg cccccgggcg
      901 cgcccttgcc cagccttccc ttccctccgg taagcatgat gccaaacggc ccgatgccgg
      961 ttccccagat gatgaacttc gggctgccat cgctggcccc gctggtgccg cccccaacgc
     1021 tgctcgtgcc gtacccagtt atcgtgcccc tgccggtgcc catccctatc cctatcccta
     1081 tcccccacgt gaacgattcc aagcccccca acggattttc cagcaacggg gagagcttcg
     1141 ttccgagcgc cccgggcgac tcctcggcgg cgggaggcaa ggctggtgga cgctccttgt
     1201 ccccgcggga ctccaagcag ggctcttcca agtcagccga ctcgccgccc ggaagctccg
     1261 gccaggctct gagcctggcg ccctcggagc gcggtcgcgg ggaggtggtg gacctgaccc
     1321 ggcgcgcggc cagccccgcg ggcgcgggag gccagccggg cttcgcgggc gtgctgcacg
     1381 gcccgcagga cggcgtcatc gacctgaccg tgggccaccg agcccggctg cacaacgtga
     1441 tccaccgcgc gctgcacgct cacgtcaagg cggagcgcga gccgggagcc gcggagcgca
     1501 ggacctgcgg cggctgcagg gacggccact gcagcccgcc cgccgccggc gaccccggcc
     1561 cgggcgcccc cgcgggtccg gaggccgccg ccgcctgcaa cgtcatcgtg aacggcaccc
     1621 gcagcgctcc cgcggaggcc aagggcgcgg agcccccgcc cgagcagccg ccgccccctg
     1681 cccctcccaa aaagctgctg tcgcccgagg agcccgcggt gaatgagctg gagtcggtca
     1741 aggagaacaa ctgcgcttcc aactgccacc tggacgggga agtcaccaaa aaactgatgg
     1801 gggaggaagc cttggcgggg ggcgacaagt cagacccgaa ccttaataac cccgcggacg
     1861 aggaccacgc ctatgctctg cggatgctgc ccaagaccgg ctgcgtgatc cagcctgtgc
     1921 caaaacccgc agagaaggct gccatgacgc cgtgcgtcat ctcctcgccc atgctcagcg
     1981 ctggccccga ggacctggag ccgccgctca aaaggaggtg cctccgaatt agaaaccaga
     2041 ataagtaaaa aaaaaaagga acactcgctc ccagggtaca ttgcatggag agagggcgtg
     2101 gagcaaacca agtcatgcca tccaatgaca ccagctgctc agctcaccac ctcgctctgg
     2161 ctaaaactca agcaaataac acagcttccc gtcattaaac atcttggagg aagcagccct
     2221 ccctggtggc ctcaaggccg gagaagccag caggtcttgg acccatcaag cctgggccca
     2281 gcattcctgc ctacttcatc tcaattctcc ccagaagaac ttagggatat cgctggttta
     2341 aaaacaacaa caaaaagcaa aacaaaacac caacccgcca caaggaccaa tgtaggtatt
     2401 cttgccccca tcgtcaaggc tctacggatg aggctggagg atgacaggga ctggaaaata
     2461 agaacctttt ataaaaatct ttttaagaac tgctgtggtt tgctgctacg ataagaattg
     2521 tgagttgctt ttacagttta ggaacggaac tgttcacgtt ttttggtggg gagacgggat
     2581 ggtgctggag ttctcaatgc ctcagactca tctctgccca gcccacgatg cacttttaaa
     2641 tgaagaggta gaatatttta tcggctactc tacttttcat gttatttttt acaaaggcca
     2701 cctttatcct ttttgatgcc atattttcag tgttacactt ttatggcttt taattttcga
     2761 tctgccagat gtaggaagca gcatggatag tttatactgt ggttttaaca gagaccgaat
     2821 gccaagagaa ctcggtaaat gtttattctt ctcagctttc tcttgaaatg cccctaaata
     2881 gcgccccatt tgggaacaga gcaagagtgt tgaactgaag accaaaatgc cctcaaggtg
     2941 taatataatc tgagggggga atatttgctg ggcgtcagga aagactcgga tgaaatttca
     3001 accctgatgg ttttccgtgg tccaggaagt cagcgagaca atctctctct gcgcagagtc
     3061 ctttcatgat aattagaatg gtatggacga accgatgcaa acaagagaga aagtgagaaa
     3121 gatcgctgga ttctgtttca ctgtttgctt tctcctgtca tggttaagag aaatgtgcaa
     3181 ttcgatcctc aatcagtggg tggaggataa cagggtagat ttacttgtgt gcacttgtac
     3241 agttgtagct gcgagtccag aagtcctcta gaacatgtgt actggcactg agttgcagag
     3301 actgtcgtgg agtgccccag tctgatgagt acgaaaaaaa aaaaaagaaa agaaaagaaa
     3361 agaaaaaaaa tccccaaaaa agagaagaaa actttaaaaa aaaaatcaag tcaaatcacc
     3421 ttgtgattca gtgtatctgt ttactaactc aaataaaagc aattgttccc tctggagggg
     3481 tccaggtgcc ccgcccctcc aggtccccga gcctcagcag gagggtgaca gaaggcagga
     3541 gggcaggagg ggctggtgtc gtctcagctt cgcggctgca ctggggccgc ggatgcgtgt
     3601 acatactgta tttctatata cgcctttgta cagtcgagtc aagctactgt tttgcaggcg
     3661 ctccttattt attagagccg tgagagcttg ggggtggggg ggacacacct ggcgagcaag
     3721 ctcgcttttt aaacataaaa tggggggcaa gggaagggag gcgggaggga ggggttgctc
     3781 ataagcccag ggagagattt ataaaaggga acgaaaaaga aaaaaagaaa aaaaaaaaaa
     3841 aaacttccaa cgacaaacta aaccagctta cagcccacca ccaagccacg cccctacagg
     3901 aagttgccgc ccctctgggc actccttttc ctgccgtgtc agaatcatca gacaaataaa
     3961 tctctaagaa acgttagcag cgca
//
