LOCUS       XM_017601660            5003 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus sine oculis binding protein homolog
            (Sobp), transcript variant X3, mRNA.
ACCESSION   XM_017601660
VERSION     XM_017601660.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_017601660.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5003
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5003
                     /gene="Sobp"
                     /gene_synonym="jcx1; RGD1560479; Sobpl"
                     /note="sine oculis binding protein homolog; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 23 ESTs, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 47 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:309860"
                     /db_xref="RGD:1560479"
     CDS             569..3067
                     /gene="Sobp"
                     /gene_synonym="jcx1; RGD1560479; Sobpl"
                     /codon_start=1
                     /product="sine oculis-binding protein homolog isoform X2"
                     /protein_id="XP_017457149.1"
                     /db_xref="GeneID:309860"
                     /db_xref="RGD:1560479"
                     /translation="MAEMEKEGRPPENKRSRKPAHPVKREINEEMKNFAENTMNELLG
                     WYGYDKVELKDGEDIEFRSYTTDGESRQHISVLKENSLPKPKLPEDSVISSYNISTGY
                     SGLATGNGLSDSPAGSKDHGNVPIIVPLIPPPFIKPPAEDEVSNVQIMCAWCQKVGIK
                     RYSLSMGSEVKSFCSEKCFAACRRAYFKRNKVCDWCKHIRHTKEYLDFGDGERRLQFC
                     SAKCLNQYKMDIFYKETQANLPAGLCGTLHPHMESKAEGTGVQLLTPDSWNIPLTDAR
                     RKAPSPVAAAGQSQGPGPSSSTTVSPSDTANCSVTKIPTPVPKSLPISETPSIPPVSV
                     QPPASIGPPLGVPPRSPPMVMTNRGPVPLPIFMEQQIIQQIRPPFIRGPPHHASNPNS
                     PLSNPMLPGIGPPPGGPRNLGPTSSPMHRPMLSPHIHPPSTPTMPGNPPGLLPPPPPG
                     APLPSLPFPPVSMMPNGPMPVPQMMNFGLPSLAPLVPPPTLLVPYPVIVPLPVPIPIP
                     IPIPHVNDSKPPNGFSSNGESFVPSAPGDSSAAGGKAGGRSLSPRDSKQGSSKSADSP
                     PGSSGQALSLAPSERGRGEVVDLTRRAASPAGAGGQPGFAGVLHGPQDGVIDLTVGHR
                     ARLHNVIHRALHAHVKAEREPGAAERRTCGGCRDGHCSPPAAGDPGPGAPAGPEAAAA
                     CNVIVNGTRSAPAEAKGAEPPPEQPPPPAPPKKLLSPEEPAVNELESVKENNCASNCH
                     LDGEVTKKLMGEEALAGGDKSDPNLNNPADEDHAYALRMLPKTGCVIQPVPKPAEKAA
                     MTPCVISSPMLSAGPEDLEPPLKRRCLRIRNQNK"
ORIGIN      
        1 tccccgctca gtccctccct ccgcccgcgg ctcggctcgc gggaggcgca gggcgccggg
       61 gctggcgcgc tctcccgggc gcacacacag atccacgcac gcacgcccag agcagctgtc
      121 tccgccgtgg ccggcgctcc tctcgcccat gcggacagac agagcgcagg aagatggctg
      181 acgactcctt cgggccccga ggatgcagcc cggcggcggc gggagcggga gcggcggcgg
      241 tggcaccggc agcggcggca gcaggagcgg cggcggcgac ggcaggagcg gcggcggcgg
      301 catccccgag actccccggg ctacccttcc ccgtgacggc cactgacggt ctccgccgct
      361 agaagagacc ccgctcctcc ctcgcccgtc tccctccccc cccaaacccc ctcccagccc
      421 cggacccgcc agccccgcta cctccgccag cgttgccacc atcagcacca cctccacctc
      481 cgccaccgcc accgccacca ccaccaccac cactaccgcc ggcggcggca gcagccattt
      541 catctccaca gaaaccagac acaaaaacat ggcagaaatg gagaaagaag ggagacctcc
      601 ggaaaataaa aggagccgga aaccagctca ccctgtgaag agggaaatca acgaggagat
      661 gaagaacttt gcagaaaaca ccatgaatga actcctcggc tggtatggct atgataaagt
      721 tgaattaaaa gacggcgaag atattgaatt cagaagctac actactgatg gagaaagccg
      781 gcaacacatt tctgttctca aagaaaactc tttgccaaaa ccaaaattac cggaggacag
      841 tgttatttca tcttacaata taagcacagg ctactcaggc cttgccactg ggaacggact
      901 cagtgactcg cctgcagggt caaaggacca tggcaatgtg cctattattg tccctttaat
      961 cccaccacct ttcataaagc cgccagcaga agatgaggtg tcaaatgtac aaataatgtg
     1021 tgcctggtgc cagaaagtgg ggatcaagcg ctattccctg agtatgggaa gtgaggtgaa
     1081 aagcttctgc agcgagaaat gctttgcggc ctgccggaga gcctacttca aaagaaacaa
     1141 ggtgtgtgac tggtgtaaac acataaggca tacaaaagaa tacctggatt ttggggacgg
     1201 ggagagaagg cttcagttct gcagtgcaaa atgtctcaat caatacaaaa tggacatttt
     1261 ctacaaagag acacaggcca accttccagc tgggctgtgc ggcacgttac accctcacat
     1321 ggagagcaaa gcagaaggca ccggggtgca gctgctcact ccagactctt ggaatatccc
     1381 gctaacagat gctcggagga aagccccctc ccccgtggct gcagctggcc aaagccaggg
     1441 ccctggcccc tcctcgtcca ccaccgtttc tccatctgac actgccaact gctctgtcac
     1501 taaaatcccc acgccagtgc ccaagtccct ccccatcagc gagactccaa gcatccctcc
     1561 cgtctcagtc cagccacctg ctagcatcgg acctccactg ggtgtcccgc ctcgcagtcc
     1621 tcccatggtg atgaccaacc gcggcccagt gcctctgccc atcttcatgg agcagcagat
     1681 catccagcag atccgcccgc ccttcatccg tggcccaccg caccacgcct ccaaccccaa
     1741 tagccccttg tccaacccca tgctcccggg cattgggccc ccgcccggtg gccccaggaa
     1801 cctaggcccc acttccagtc ccatgcacag gcccatgctc tcgccccaca tccacccccc
     1861 aagtacccct accatgcctg ggaacccccc agggctgctg cccccgccgc ccccgggcgc
     1921 gcccttgccc agccttccct tccctccggt aagcatgatg ccaaacggcc cgatgccggt
     1981 tccccagatg atgaacttcg ggctgccatc gctggccccg ctggtgccgc ccccaacgct
     2041 gctcgtgccg tacccagtta tcgtgcccct gccggtgccc atccctatcc ctatccctat
     2101 cccccacgtg aacgattcca agccccccaa cggattttcc agcaacgggg agagcttcgt
     2161 tccgagcgcc ccgggcgact cctcggcggc gggaggcaag gctggtggac gctccttgtc
     2221 cccgcgggac tccaagcagg gctcttccaa gtcagccgac tcgccgcccg gaagctccgg
     2281 ccaggctctg agcctggcgc cctcggagcg cggtcgcggg gaggtggtgg acctgacccg
     2341 gcgcgcggcc agccccgcgg gcgcgggagg ccagccgggc ttcgcgggcg tgctgcacgg
     2401 cccgcaggac ggcgtcatcg acctgaccgt gggccaccga gcccggctgc acaacgtgat
     2461 ccaccgcgcg ctgcacgctc acgtcaaggc ggagcgcgag ccgggagccg cggagcgcag
     2521 gacctgcggc ggctgcaggg acggccactg cagcccgccc gccgccggcg accccggccc
     2581 gggcgccccc gcgggtccgg aggccgccgc cgcctgcaac gtcatcgtga acggcacccg
     2641 cagcgctccc gcggaggcca agggcgcgga gcccccgccc gagcagccgc cgccccctgc
     2701 ccctcccaaa aagctgctgt cgcccgagga gcccgcggtg aatgagctgg agtcggtcaa
     2761 ggagaacaac tgcgcttcca actgccacct ggacggggaa gtcaccaaaa aactgatggg
     2821 ggaggaagcc ttggcggggg gcgacaagtc agacccgaac cttaataacc ccgcggacga
     2881 ggaccacgcc tatgctctgc ggatgctgcc caagaccggc tgcgtgatcc agcctgtgcc
     2941 aaaacccgca gagaaggctg ccatgacgcc gtgcgtcatc tcctcgccca tgctcagcgc
     3001 tggccccgag gacctggagc cgccgctcaa aaggaggtgc ctccgaatta gaaaccagaa
     3061 taagtaaaaa aaaaaaggaa cactcgctcc cagggtacat tgcatggaga gagggcgtgg
     3121 agcaaaccaa gtcatgccat ccaatgacac cagctgctca gctcaccacc tcgctctggc
     3181 taaaactcaa gcaaataaca cagcttcccg tcattaaaca tcttggagga agcagccctc
     3241 cctggtggcc tcaaggccgg agaagccagc aggtcttgga cccatcaagc ctgggcccag
     3301 cattcctgcc tacttcatct caattctccc cagaagaact tagggatatc gctggtttaa
     3361 aaacaacaac aaaaagcaaa acaaaacacc aacccgccac aaggaccaat gtaggtattc
     3421 ttgcccccat cgtcaaggct ctacggatga ggctggagga tgacagggac tggaaaataa
     3481 gaacctttta taaaaatctt tttaagaact gctgtggttt gctgctacga taagaattgt
     3541 gagttgcttt tacagtttag gaacggaact gttcacgttt tttggtgggg agacgggatg
     3601 gtgctggagt tctcaatgcc tcagactcat ctctgcccag cccacgatgc acttttaaat
     3661 gaagaggtag aatattttat cggctactct acttttcatg ttatttttta caaaggccac
     3721 ctttatcctt tttgatgcca tattttcagt gttacacttt tatggctttt aattttcgat
     3781 ctgccagatg taggaagcag catggatagt ttatactgtg gttttaacag agaccgaatg
     3841 ccaagagaac tcggtaaatg tttattcttc tcagctttct cttgaaatgc ccctaaatag
     3901 cgccccattt gggaacagag caagagtgtt gaactgaaga ccaaaatgcc ctcaaggtgt
     3961 aatataatct gaggggggaa tatttgctgg gcgtcaggaa agactcggat gaaatttcaa
     4021 ccctgatggt tttccgtggt ccaggaagtc agcgagacaa tctctctctg cgcagagtcc
     4081 tttcatgata attagaatgg tatggacgaa ccgatgcaaa caagagagaa agtgagaaag
     4141 atcgctggat tctgtttcac tgtttgcttt ctcctgtcat ggttaagaga aatgtgcaat
     4201 tcgatcctca atcagtgggt ggaggataac agggtagatt tacttgtgtg cacttgtaca
     4261 gttgtagctg cgagtccaga agtcctctag aacatgtgta ctggcactga gttgcagaga
     4321 ctgtcgtgga gtgccccagt ctgatgagta cgaaaaaaaa aaaaagaaaa gaaaagaaaa
     4381 gaaaaaaaat ccccaaaaaa gagaagaaaa ctttaaaaaa aaaatcaagt caaatcacct
     4441 tgtgattcag tgtatctgtt tactaactca aataaaagca attgttccct ctggaggggt
     4501 ccaggtgccc cgcccctcca ggtccccgag cctcagcagg agggtgacag aaggcaggag
     4561 ggcaggaggg gctggtgtcg tctcagcttc gcggctgcac tggggccgcg gatgcgtgta
     4621 catactgtat ttctatatac gcctttgtac agtcgagtca agctactgtt ttgcaggcgc
     4681 tccttattta ttagagccgt gagagcttgg gggtgggggg gacacacctg gcgagcaagc
     4741 tcgcttttta aacataaaat ggggggcaag ggaagggagg cgggagggag gggttgctca
     4801 taagcccagg gagagattta taaaagggaa cgaaaaagaa aaaaagaaaa aaaaaaaaaa
     4861 aacttccaac gacaaactaa accagcttac agcccaccac caagccacgc ccctacagga
     4921 agttgccgcc cctctgggca ctccttttcc tgccgtgtca gaatcatcag acaaataaat
     4981 ctctaagaaa cgttagcagc gca
//
