LOCUS       NM_001412110            5003 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus sine oculis binding protein homolog (Sobp), mRNA.
ACCESSION   NM_001412110
VERSION     NM_001412110.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5003)
  AUTHORS   Sun,H. and Hunter,T.
  TITLE     Poly-small ubiquitin-like modifier (PolySUMO)-binding proteins
            identified through a string search
  JOURNAL   J Biol Chem 287 (50), 42071-42083 (2012)
   PUBMED   23086935
REFERENCE   2  (bases 1 to 5003)
  AUTHORS   Birk,E., Har-Zahav,A., Manzini,C.M., Pasmanik-Chor,M.,
            Kornreich,L., Walsh,C.A., Noben-Trauth,K., Albin,A., Simon,A.J.,
            Colleaux,L., Morad,Y., Rainshtein,L., Tischfield,D.J., Wang,P.,
            Magal,N., Maya,I., Shoshani,N., Rechavi,G., Gothelf,D., Maydan,G.,
            Shohat,M. and Basel-Vanagaite,L.
  TITLE     SOBP is mutated in syndromic and nonsyndromic intellectual
            disability and is highly expressed in the brain limbic system
  JOURNAL   Am J Hum Genet 87 (5), 694-700 (2010)
   PUBMED   21035105
REFERENCE   3  (bases 1 to 5003)
  AUTHORS   Chen,Z., Montcouquiol,M., Calderon,R., Jenkins,N.A., Copeland,N.G.,
            Kelley,M.W. and Noben-Trauth,K.
  TITLE     Jxc1/Sobp, encoding a nuclear zinc finger protein, is critical for
            cochlear growth, cell fate, and patterning of the organ of corti
  JOURNAL   J Neurosci 28 (26), 6633-6641 (2008)
   PUBMED   18579736
REFERENCE   4  (bases 1 to 5003)
  AUTHORS   Calderon,A., Derr,A., Stagner,B.B., Johnson,K.R., Martin,G. and
            Noben-Trauth,K.
  TITLE     Cochlear developmental defect and background-dependent hearing
            thresholds in the Jackson circler (jc) mutant mouse
  JOURNAL   Hear Res 221 (1-2), 44-58 (2006)
   PUBMED   16962269
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000020.1.
            
            ##Evidence-Data-START##
            CDS exon combination :: DQ503410.1, SRR26360186.2028758.1
                                    [ECO:0000331]
            RNAseq introns       :: single sample supports all introns
                                    SAMN12840106, SAMN12840110 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-576               JAXUCZ010000020.1  48242946-48243521   c
            577-715             JAXUCZ010000020.1  48229184-48229322   c
            716-901             JAXUCZ010000020.1  48226315-48226500   c
            902-1053            JAXUCZ010000020.1  48193594-48193745   c
            1054-1149           JAXUCZ010000020.1  48139619-48139714   c
            1150-3085           JAXUCZ010000020.1  48083469-48085404   c
            3086-5003           JAXUCZ010000020.1  48064445-48066362   c
FEATURES             Location/Qualifiers
     source          1..5003
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20q13"
     gene            1..5003
                     /gene="Sobp"
                     /gene_synonym="jcx1; RGD1560479; Sobpl"
                     /note="sine oculis binding protein homolog"
                     /db_xref="GeneID:309860"
                     /db_xref="RGD:1560479"
     exon            1..576
                     /gene="Sobp"
                     /gene_synonym="jcx1; RGD1560479; Sobpl"
                     /inference="alignment:Splign:2.1.0"
     CDS             481..3075
                     /gene="Sobp"
                     /gene_synonym="jcx1; RGD1560479; Sobpl"
                     /note="jackson circler protein 1; sine oculis-binding
                     protein homolog-like"
                     /codon_start=1
                     /product="sine oculis-binding protein homolog"
                     /protein_id="NP_001399039.1"
                     /db_xref="GeneID:309860"
                     /db_xref="RGD:1560479"
                     /translation="MAEMEKEGRPPENKRSRKPAHPVKREINEEMKNFAENTMNELLG
                     WYGYDKVELKDGEDIEFRSYTTDGESRQHISVLKENSLPKPKLPEDSVISSYNISTGY
                     SGLATGNGLSDSPAGSKDHGNVPIIVPLIPPPFIKPPAEDEVSNVQIMCAWCQKVGIK
                     RYSLSMGSEVKSFCSEKCFAACRRAYFKRNKARDEDGHAESFPQQHYAKETPRLAFKN
                     NCELLVCDWCKHIRHTKEYLDFGDGERRLQFCSAKCLNQYKMDIFYKETQANLPAGLC
                     GTLHPHMESKAEGTGVQLLTPDSWNIPLTDARRKAPSPVAAAGQSQGPGPSSSTTVSP
                     SDTANCSVTKIPTPVPKSLPISETPSIPPVSVQPPASIGPPLGVPPRSPPMVMTNRGP
                     VPLPIFMEQQIIQQIRPPFIRGPPHHASNPNSPLSNPMLPGIGPPPGGPRNLGPTSSP
                     MHRPMLSPHIHPPSTPTMPGNPPGLLPPPPPGAPLPSLPFPPVSMMPNGPMPVPQMMN
                     FGLPSLAPLVPPPTLLVPYPVIVPLPVPIPIPIPIPHVNDSKPPNGFSSNGESFVPSA
                     PGDSSAAGGKAGGRSLSPRDSKQGSSKSADSPPGSSGQALSLAPSERGRGEVVDLTRR
                     AASPAGAGGQPGFAGVLHGPQDGVIDLTVGHRARLHNVIHRALHAHVKAEREPGAAER
                     RTCGGCRDGHCSPPAAGDPGPGAPAGPEAAAACNVIVNGTRSAPAEAKGAEPPPEQPP
                     PPAPPKKLLSPEEPAVNELESVKENNCASNCHLDGEVTKKLMGEEALAGGDKSDPNLN
                     NPADEDHAYALRMLPKTGCVIQPVPKPAEKAAMTPCVISSPMLSAGPEDLEPPLKRRC
                     LRIRNQNK"
     exon            577..715
                     /gene="Sobp"
                     /gene_synonym="jcx1; RGD1560479; Sobpl"
                     /inference="alignment:Splign:2.1.0"
     exon            716..901
                     /gene="Sobp"
                     /gene_synonym="jcx1; RGD1560479; Sobpl"
                     /inference="alignment:Splign:2.1.0"
     exon            902..1053
                     /gene="Sobp"
                     /gene_synonym="jcx1; RGD1560479; Sobpl"
                     /inference="alignment:Splign:2.1.0"
     exon            1054..1149
                     /gene="Sobp"
                     /gene_synonym="jcx1; RGD1560479; Sobpl"
                     /inference="alignment:Splign:2.1.0"
     exon            1150..3085
                     /gene="Sobp"
                     /gene_synonym="jcx1; RGD1560479; Sobpl"
                     /inference="alignment:Splign:2.1.0"
     exon            3086..5003
                     /gene="Sobp"
                     /gene_synonym="jcx1; RGD1560479; Sobpl"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agatccacgc acgcacgccc agagcagctg tctccgccgt ggccggcgct cctctcgccc
       61 atgcggacag acagagcgca ggaagatggc tgacgactcc ttcgggcccc gaggatgcag
      121 cccggcggcg gcgggagcgg gagcggcggc ggtggcaccg gcagcggcgg cagcaggagc
      181 ggcggcggcg acggcaggag cggcggcggc ggcatccccg agactccccg ggctaccctt
      241 ccccgtgacg gccactgacg gtctccgccg ctagaagaga ccccgctcct ccctcgcccg
      301 tctccctccc cccccaaacc ccctcccagc cccggacccg ccagccccgc tacctccgcc
      361 agcgttgcca ccatcagcac cacctccacc tccgccaccg ccaccgccac caccaccacc
      421 accactaccg ccggcggcgg cagcagccat ttcatctcca cagaaaccag acacaaaaac
      481 atggcagaaa tggagaaaga agggagacct ccggaaaata aaaggagccg gaaaccagct
      541 caccctgtga agagggaaat caacgaggag atgaagaact ttgcagaaaa caccatgaat
      601 gaactcctcg gctggtatgg ctatgataaa gttgaattaa aagacggcga agatattgaa
      661 ttcagaagct acactactga tggagaaagc cggcaacaca tttctgttct caaagaaaac
      721 tctttgccaa aaccaaaatt accggaggac agtgttattt catcttacaa tataagcaca
      781 ggctactcag gccttgccac tgggaacgga ctcagtgact cgcctgcagg gtcaaaggac
      841 catggcaatg tgcctattat tgtcccttta atcccaccac ctttcataaa gccgccagca
      901 gaagatgagg tgtcaaatgt acaaataatg tgtgcctggt gccagaaagt ggggatcaag
      961 cgctattccc tgagtatggg aagtgaggtg aaaagcttct gcagcgagaa atgctttgcg
     1021 gcctgccgga gagcctactt caaaagaaac aaggctagag atgaagatgg acatgctgaa
     1081 agttttcccc agcagcacta tgctaaggaa actccaaggc ttgccttcaa gaataactgc
     1141 gaactacttg tgtgtgactg gtgtaaacac ataaggcata caaaagaata cctggatttt
     1201 ggggacgggg agagaaggct tcagttctgc agtgcaaaat gtctcaatca atacaaaatg
     1261 gacattttct acaaagagac acaggccaac cttccagctg ggctgtgcgg cacgttacac
     1321 cctcacatgg agagcaaagc agaaggcacc ggggtgcagc tgctcactcc agactcttgg
     1381 aatatcccgc taacagatgc tcggaggaaa gccccctccc ccgtggctgc agctggccaa
     1441 agccagggcc ctggcccctc ctcgtccacc accgtttctc catctgacac tgccaactgc
     1501 tctgtcacta aaatccccac gccagtgccc aagtccctcc ccatcagcga gactccaagc
     1561 atccctcccg tctcagtcca gccacctgct agcatcggac ctccactggg tgtcccgcct
     1621 cgcagtcctc ccatggtgat gaccaaccgc ggcccagtgc ctctgcccat cttcatggag
     1681 cagcagatca tccagcagat ccgcccgccc ttcatccgtg gcccaccgca ccacgcctcc
     1741 aaccccaata gccccttgtc caaccccatg ctcccgggca ttgggccccc gcccggtggc
     1801 cccaggaacc taggccccac ttccagtccc atgcacaggc ccatgctctc gccccacatc
     1861 caccccccaa gtacccctac catgcctggg aaccccccag ggctgctgcc cccgccgccc
     1921 ccgggcgcgc ccttgcccag ccttcccttc cctccggtaa gcatgatgcc aaacggcccg
     1981 atgccggttc cccagatgat gaacttcggg ctgccatcgc tggccccgct ggtgccgccc
     2041 ccaacgctgc tcgtgccgta cccagttatc gtgcccctgc cggtgcccat ccctatccct
     2101 atccctatcc cccacgtgaa cgattccaag ccccccaacg gattttccag caacggggag
     2161 agcttcgttc cgagcgcccc gggcgactcc tcggcggcgg gaggcaaggc tggtggacgc
     2221 tccttgtccc cgcgggactc caagcagggc tcttccaagt cagccgactc gccgcccgga
     2281 agctccggcc aggctctgag cctggcgccc tcggagcgcg gtcgcgggga ggtggtggac
     2341 ctgacccggc gcgcggccag ccccgcgggc gcgggaggcc agccgggctt cgcgggcgtg
     2401 ctgcacggcc cgcaggacgg cgtcatcgac ctgaccgtgg gccaccgagc ccggctgcac
     2461 aacgtgatcc accgcgcgct gcacgctcac gtcaaggcgg agcgcgagcc gggagccgcg
     2521 gagcgcagga cctgcggcgg ctgcagggac ggccactgca gcccgcccgc cgccggcgac
     2581 cccggcccgg gcgcccccgc gggtccggag gccgccgccg cctgcaacgt catcgtgaac
     2641 ggcacccgca gcgctcccgc ggaggccaag ggcgcggagc ccccgcccga gcagccgccg
     2701 ccccctgccc ctcccaaaaa gctgctgtcg cccgaggagc ccgcggtgaa tgagctggag
     2761 tcggtcaagg agaacaactg cgcttccaac tgccacctgg acggggaagt caccaaaaaa
     2821 ctgatggggg aggaagcctt ggcggggggc gacaagtcag acccgaacct taataacccc
     2881 gcggacgagg accacgccta tgctctgcgg atgctgccca agaccggctg cgtgatccag
     2941 cctgtgccaa aacccgcaga gaaggctgcc atgacgccgt gcgtcatctc ctcgcccatg
     3001 ctcagcgctg gccccgagga cctggagccg ccgctcaaaa ggaggtgcct ccgaattaga
     3061 aaccagaata agtaaaaaaa aaaaggaaca ctcgctccca gggtacattg catggagaga
     3121 gggcgtggag caaaccaagt catgccatcc aatgacacca gctgctcagc tcaccacctc
     3181 gctctggcta aaactcaagc aaataacaca gcttcccgtc attaaacatc ttggaggaag
     3241 cagccctccc tggtggcctc aaggccggag aagccagcag gtcttggacc catcaagcct
     3301 gggcccagca ttcctgccta cttcatctca attctcccca gaagaactta gggatatcgc
     3361 tggtttaaaa acaacaacaa aaagcaaaac aaaacaccaa cccgccacaa ggaccaatgt
     3421 aggtattctt gcccccatcg tcaaggctct acggatgagg ctggaggatg acagggactg
     3481 gaaaataaga accttttata aaaatctttt taagaactgc tgtggtttgc tgctacgata
     3541 agaattgtga gttgctttta cagtttagga acggaactgt tcacgttttt tggtggggag
     3601 acgggatggt gctggagttc tcaatgcctc agactcatct ctgcccagcc cacgatgcac
     3661 ttttaaatga agaggtagaa tattttatcg gctactctac ttttcatgtt attttttaca
     3721 aaggccacct ttatcctttt tgatgccata ttttcagtgt tacactttta tggcttttaa
     3781 ttttcgatct gccagatgta ggaagcagca tggatagttt atactgtggt tttaacagag
     3841 accgaatgcc aagagaactc ggtaaatgtt tattcttctc agctttctct tgaaatgccc
     3901 ctaaatagcg ccccatttgg gaacagagca agagtgttga actgaagacc aaaatgccct
     3961 caaggtgtaa tataatctga ggggggaata tttgctgggc gtcaggaaag actcggatga
     4021 aatttcaacc ctgatggttt tccgtggtcc aggaagtcag cgagacaatc tctctctgcg
     4081 cagagtcctt tcatgataat tagaatggta tggacgaacc gatgcaaaca agagagaaag
     4141 tgagaaagat cgctggattc tgtttcactg tttgctttct cctgtcatgg ttaagagaaa
     4201 tgtgcaattc gatcctcaat cagtgggtgg aggataacag ggtagattta cttgtgtgca
     4261 cttgtacagt tgtagctgcg agtccagaag tcctctagaa catgtgtact ggcactgagt
     4321 tgcagagact gtcgtggagt gccccagtct gatgagtacg aaaaaaaaaa aaagaaaaga
     4381 aaagaaaaga aaaaaaatcc ccaaaaaaga gaagaaaact ttaaaaaaaa aatcaagtca
     4441 aatcaccttg tgattcagtg tatctgttta ctaactcaaa taaaagcaat tgttccctct
     4501 ggaggggtcc aggtgccccg cccctccagg tccccgagcc tcagcaggag ggtgacagaa
     4561 ggcaggaggg caggaggggc tggtgtcgtc tcagcttcgc ggctgcactg gggccgcgga
     4621 tgcgtgtaca tactgtattt ctatatacgc ctttgtacag tcgagtcaag ctactgtttt
     4681 gcaggcgctc cttatttatt agagccgtga gagcttgggg gtggggggga cacacctggc
     4741 gagcaagctc gctttttaaa cataaaatgg ggggcaaggg aagggaggcg ggagggaggg
     4801 gttgctcata agcccaggga gagatttata aaagggaacg aaaaagaaaa aaagaaaaaa
     4861 aaaaaaaaaa cttccaacga caaactaaac cagcttacag cccaccacca agccacgccc
     4921 ctacaggaag ttgccgcccc tctgggcact ccttttcctg ccgtgtcaga atcatcagac
     4981 aaataaatct ctaagaaacg tta
//
