LOCUS       NM_001104640            5089 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus sine oculis binding protein homolog (Sobp), mRNA.
ACCESSION   NM_001104640 XM_001068313 XM_006256574 XM_228309
VERSION     NM_001104640.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5089)
  AUTHORS   Sun,H. and Hunter,T.
  TITLE     Poly-small ubiquitin-like modifier (PolySUMO)-binding proteins
            identified through a string search
  JOURNAL   J Biol Chem 287 (50), 42071-42083 (2012)
   PUBMED   23086935
REFERENCE   2  (bases 1 to 5089)
  AUTHORS   Birk,E., Har-Zahav,A., Manzini,C.M., Pasmanik-Chor,M.,
            Kornreich,L., Walsh,C.A., Noben-Trauth,K., Albin,A., Simon,A.J.,
            Colleaux,L., Morad,Y., Rainshtein,L., Tischfield,D.J., Wang,P.,
            Magal,N., Maya,I., Shoshani,N., Rechavi,G., Gothelf,D., Maydan,G.,
            Shohat,M. and Basel-Vanagaite,L.
  TITLE     SOBP is mutated in syndromic and nonsyndromic intellectual
            disability and is highly expressed in the brain limbic system
  JOURNAL   Am J Hum Genet 87 (5), 694-700 (2010)
   PUBMED   21035105
REFERENCE   3  (bases 1 to 5089)
  AUTHORS   Chen,Z., Montcouquiol,M., Calderon,R., Jenkins,N.A., Copeland,N.G.,
            Kelley,M.W. and Noben-Trauth,K.
  TITLE     Jxc1/Sobp, encoding a nuclear zinc finger protein, is critical for
            cochlear growth, cell fate, and patterning of the organ of corti
  JOURNAL   J Neurosci 28 (26), 6633-6641 (2008)
   PUBMED   18579736
REFERENCE   4  (bases 1 to 5089)
  AUTHORS   Calderon,A., Derr,A., Stagner,B.B., Johnson,K.R., Martin,G. and
            Noben-Trauth,K.
  TITLE     Cochlear developmental defect and background-dependent hearing
            thresholds in the Jackson circler (jc) mutant mouse
  JOURNAL   Hear Res 221 (1-2), 44-58 (2006)
   PUBMED   16962269
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000020.1.
            
            On or before Sep 17, 2022 this sequence version replaced
            XM_006256574.4, NM_001104640.1.
            
            ##Evidence-Data-START##
            CDS exon combination :: DQ503410.1, SRR26360186.2028758.1
                                    [ECO:0000331]
            RNAseq introns       :: single sample supports all introns
                                    SAMN12840106, SAMN12840110 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-662               JAXUCZ010000020.1  48242946-48243607   c
            663-801             JAXUCZ010000020.1  48229184-48229322   c
            802-987             JAXUCZ010000020.1  48226315-48226500   c
            988-1139            JAXUCZ010000020.1  48193594-48193745   c
            1140-1235           JAXUCZ010000020.1  48139619-48139714   c
            1236-3171           JAXUCZ010000020.1  48083469-48085404   c
            3172-5089           JAXUCZ010000020.1  48064445-48066362   c
FEATURES             Location/Qualifiers
     source          1..5089
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20q13"
     gene            1..5089
                     /gene="Sobp"
                     /gene_synonym="jcx1; RGD1560479; Sobpl"
                     /note="sine oculis binding protein homolog"
                     /db_xref="GeneID:309860"
                     /db_xref="RGD:1560479"
     exon            1..662
                     /gene="Sobp"
                     /gene_synonym="jcx1; RGD1560479; Sobpl"
                     /inference="alignment:Splign:2.1.0"
     CDS             567..3161
                     /gene="Sobp"
                     /gene_synonym="jcx1; RGD1560479; Sobpl"
                     /note="jackson circler protein 1; sine oculis-binding
                     protein homolog-like"
                     /codon_start=1
                     /product="sine oculis-binding protein homolog"
                     /protein_id="NP_001098110.1"
                     /db_xref="GeneID:309860"
                     /db_xref="RGD:1560479"
                     /translation="MAEMEKEGRPPENKRSRKPAHPVKREINEEMKNFAENTMNELLG
                     WYGYDKVELKDGEDIEFRSYTTDGESRQHISVLKENSLPKPKLPEDSVISSYNISTGY
                     SGLATGNGLSDSPAGSKDHGNVPIIVPLIPPPFIKPPAEDEVSNVQIMCAWCQKVGIK
                     RYSLSMGSEVKSFCSEKCFAACRRAYFKRNKARDEDGHAESFPQQHYAKETPRLAFKN
                     NCELLVCDWCKHIRHTKEYLDFGDGERRLQFCSAKCLNQYKMDIFYKETQANLPAGLC
                     GTLHPHMESKAEGTGVQLLTPDSWNIPLTDARRKAPSPVAAAGQSQGPGPSSSTTVSP
                     SDTANCSVTKIPTPVPKSLPISETPSIPPVSVQPPASIGPPLGVPPRSPPMVMTNRGP
                     VPLPIFMEQQIIQQIRPPFIRGPPHHASNPNSPLSNPMLPGIGPPPGGPRNLGPTSSP
                     MHRPMLSPHIHPPSTPTMPGNPPGLLPPPPPGAPLPSLPFPPVSMMPNGPMPVPQMMN
                     FGLPSLAPLVPPPTLLVPYPVIVPLPVPIPIPIPIPHVNDSKPPNGFSSNGESFVPSA
                     PGDSSAAGGKAGGRSLSPRDSKQGSSKSADSPPGSSGQALSLAPSERGRGEVVDLTRR
                     AASPAGAGGQPGFAGVLHGPQDGVIDLTVGHRARLHNVIHRALHAHVKAEREPGAAER
                     RTCGGCRDGHCSPPAAGDPGPGAPAGPEAAAACNVIVNGTRSAPAEAKGAEPPPEQPP
                     PPAPPKKLLSPEEPAVNELESVKENNCASNCHLDGEVTKKLMGEEALAGGDKSDPNLN
                     NPADEDHAYALRMLPKTGCVIQPVPKPAEKAAMTPCVISSPMLSAGPEDLEPPLKRRC
                     LRIRNQNK"
     exon            663..801
                     /gene="Sobp"
                     /gene_synonym="jcx1; RGD1560479; Sobpl"
                     /inference="alignment:Splign:2.1.0"
     exon            802..987
                     /gene="Sobp"
                     /gene_synonym="jcx1; RGD1560479; Sobpl"
                     /inference="alignment:Splign:2.1.0"
     exon            988..1139
                     /gene="Sobp"
                     /gene_synonym="jcx1; RGD1560479; Sobpl"
                     /inference="alignment:Splign:2.1.0"
     exon            1140..1235
                     /gene="Sobp"
                     /gene_synonym="jcx1; RGD1560479; Sobpl"
                     /inference="alignment:Splign:2.1.0"
     exon            1236..3171
                     /gene="Sobp"
                     /gene_synonym="jcx1; RGD1560479; Sobpl"
                     /inference="alignment:Splign:2.1.0"
     exon            3172..5089
                     /gene="Sobp"
                     /gene_synonym="jcx1; RGD1560479; Sobpl"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cccgctcagt ccctccctcc gcccgcggct cggctcgcgg gaggcgcagg gcgccggggc
       61 tggcgcgctc tcccgggcgc acacacagat ccacgcacgc acgcccagag cagctgtctc
      121 cgccgtggcc ggcgctcctc tcgcccatgc ggacagacag agcgcaggaa gatggctgac
      181 gactccttcg ggccccgagg atgcagcccg gcggcggcgg gagcgggagc ggcggcggtg
      241 gcaccggcag cggcggcagc aggagcggcg gcggcgacgg caggagcggc ggcggcggca
      301 tccccgagac tccccgggct acccttcccc gtgacggcca ctgacggtct ccgccgctag
      361 aagagacccc gctcctccct cgcccgtctc cctccccccc caaaccccct cccagccccg
      421 gacccgccag ccccgctacc tccgccagcg ttgccaccat cagcaccacc tccacctccg
      481 ccaccgccac cgccaccacc accaccacca ctaccgccgg cggcggcagc agccatttca
      541 tctccacaga aaccagacac aaaaacatgg cagaaatgga gaaagaaggg agacctccgg
      601 aaaataaaag gagccggaaa ccagctcacc ctgtgaagag ggaaatcaac gaggagatga
      661 agaactttgc agaaaacacc atgaatgaac tcctcggctg gtatggctat gataaagttg
      721 aattaaaaga cggcgaagat attgaattca gaagctacac tactgatgga gaaagccggc
      781 aacacatttc tgttctcaaa gaaaactctt tgccaaaacc aaaattaccg gaggacagtg
      841 ttatttcatc ttacaatata agcacaggct actcaggcct tgccactggg aacggactca
      901 gtgactcgcc tgcagggtca aaggaccatg gcaatgtgcc tattattgtc cctttaatcc
      961 caccaccttt cataaagccg ccagcagaag atgaggtgtc aaatgtacaa ataatgtgtg
     1021 cctggtgcca gaaagtgggg atcaagcgct attccctgag tatgggaagt gaggtgaaaa
     1081 gcttctgcag cgagaaatgc tttgcggcct gccggagagc ctacttcaaa agaaacaagg
     1141 ctagagatga agatggacat gctgaaagtt ttccccagca gcactatgct aaggaaactc
     1201 caaggcttgc cttcaagaat aactgcgaac tacttgtgtg tgactggtgt aaacacataa
     1261 ggcatacaaa agaatacctg gattttgggg acggggagag aaggcttcag ttctgcagtg
     1321 caaaatgtct caatcaatac aaaatggaca ttttctacaa agagacacag gccaaccttc
     1381 cagctgggct gtgcggcacg ttacaccctc acatggagag caaagcagaa ggcaccgggg
     1441 tgcagctgct cactccagac tcttggaata tcccgctaac agatgctcgg aggaaagccc
     1501 cctcccccgt ggctgcagct ggccaaagcc agggccctgg cccctcctcg tccaccaccg
     1561 tttctccatc tgacactgcc aactgctctg tcactaaaat ccccacgcca gtgcccaagt
     1621 ccctccccat cagcgagact ccaagcatcc ctcccgtctc agtccagcca cctgctagca
     1681 tcggacctcc actgggtgtc ccgcctcgca gtcctcccat ggtgatgacc aaccgcggcc
     1741 cagtgcctct gcccatcttc atggagcagc agatcatcca gcagatccgc ccgcccttca
     1801 tccgtggccc accgcaccac gcctccaacc ccaatagccc cttgtccaac cccatgctcc
     1861 cgggcattgg gcccccgccc ggtggcccca ggaacctagg ccccacttcc agtcccatgc
     1921 acaggcccat gctctcgccc cacatccacc ccccaagtac ccctaccatg cctgggaacc
     1981 ccccagggct gctgcccccg ccgcccccgg gcgcgccctt gcccagcctt cccttccctc
     2041 cggtaagcat gatgccaaac ggcccgatgc cggttcccca gatgatgaac ttcgggctgc
     2101 catcgctggc cccgctggtg ccgcccccaa cgctgctcgt gccgtaccca gttatcgtgc
     2161 ccctgccggt gcccatccct atccctatcc ctatccccca cgtgaacgat tccaagcccc
     2221 ccaacggatt ttccagcaac ggggagagct tcgttccgag cgccccgggc gactcctcgg
     2281 cggcgggagg caaggctggt ggacgctcct tgtccccgcg ggactccaag cagggctctt
     2341 ccaagtcagc cgactcgccg cccggaagct ccggccaggc tctgagcctg gcgccctcgg
     2401 agcgcggtcg cggggaggtg gtggacctga cccggcgcgc ggccagcccc gcgggcgcgg
     2461 gaggccagcc gggcttcgcg ggcgtgctgc acggcccgca ggacggcgtc atcgacctga
     2521 ccgtgggcca ccgagcccgg ctgcacaacg tgatccaccg cgcgctgcac gctcacgtca
     2581 aggcggagcg cgagccggga gccgcggagc gcaggacctg cggcggctgc agggacggcc
     2641 actgcagccc gcccgccgcc ggcgaccccg gcccgggcgc ccccgcgggt ccggaggccg
     2701 ccgccgcctg caacgtcatc gtgaacggca cccgcagcgc tcccgcggag gccaagggcg
     2761 cggagccccc gcccgagcag ccgccgcccc ctgcccctcc caaaaagctg ctgtcgcccg
     2821 aggagcccgc ggtgaatgag ctggagtcgg tcaaggagaa caactgcgct tccaactgcc
     2881 acctggacgg ggaagtcacc aaaaaactga tgggggagga agccttggcg gggggcgaca
     2941 agtcagaccc gaaccttaat aaccccgcgg acgaggacca cgcctatgct ctgcggatgc
     3001 tgcccaagac cggctgcgtg atccagcctg tgccaaaacc cgcagagaag gctgccatga
     3061 cgccgtgcgt catctcctcg cccatgctca gcgctggccc cgaggacctg gagccgccgc
     3121 tcaaaaggag gtgcctccga attagaaacc agaataagta aaaaaaaaaa ggaacactcg
     3181 ctcccagggt acattgcatg gagagagggc gtggagcaaa ccaagtcatg ccatccaatg
     3241 acaccagctg ctcagctcac cacctcgctc tggctaaaac tcaagcaaat aacacagctt
     3301 cccgtcatta aacatcttgg aggaagcagc cctccctggt ggcctcaagg ccggagaagc
     3361 cagcaggtct tggacccatc aagcctgggc ccagcattcc tgcctacttc atctcaattc
     3421 tccccagaag aacttaggga tatcgctggt ttaaaaacaa caacaaaaag caaaacaaaa
     3481 caccaacccg ccacaaggac caatgtaggt attcttgccc ccatcgtcaa ggctctacgg
     3541 atgaggctgg aggatgacag ggactggaaa ataagaacct tttataaaaa tctttttaag
     3601 aactgctgtg gtttgctgct acgataagaa ttgtgagttg cttttacagt ttaggaacgg
     3661 aactgttcac gttttttggt ggggagacgg gatggtgctg gagttctcaa tgcctcagac
     3721 tcatctctgc ccagcccacg atgcactttt aaatgaagag gtagaatatt ttatcggcta
     3781 ctctactttt catgttattt tttacaaagg ccacctttat cctttttgat gccatatttt
     3841 cagtgttaca cttttatggc ttttaatttt cgatctgcca gatgtaggaa gcagcatgga
     3901 tagtttatac tgtggtttta acagagaccg aatgccaaga gaactcggta aatgtttatt
     3961 cttctcagct ttctcttgaa atgcccctaa atagcgcccc atttgggaac agagcaagag
     4021 tgttgaactg aagaccaaaa tgccctcaag gtgtaatata atctgagggg ggaatatttg
     4081 ctgggcgtca ggaaagactc ggatgaaatt tcaaccctga tggttttccg tggtccagga
     4141 agtcagcgag acaatctctc tctgcgcaga gtcctttcat gataattaga atggtatgga
     4201 cgaaccgatg caaacaagag agaaagtgag aaagatcgct ggattctgtt tcactgtttg
     4261 ctttctcctg tcatggttaa gagaaatgtg caattcgatc ctcaatcagt gggtggagga
     4321 taacagggta gatttacttg tgtgcacttg tacagttgta gctgcgagtc cagaagtcct
     4381 ctagaacatg tgtactggca ctgagttgca gagactgtcg tggagtgccc cagtctgatg
     4441 agtacgaaaa aaaaaaaaag aaaagaaaag aaaagaaaaa aaatccccaa aaaagagaag
     4501 aaaactttaa aaaaaaaatc aagtcaaatc accttgtgat tcagtgtatc tgtttactaa
     4561 ctcaaataaa agcaattgtt ccctctggag gggtccaggt gccccgcccc tccaggtccc
     4621 cgagcctcag caggagggtg acagaaggca ggagggcagg aggggctggt gtcgtctcag
     4681 cttcgcggct gcactggggc cgcggatgcg tgtacatact gtatttctat atacgccttt
     4741 gtacagtcga gtcaagctac tgttttgcag gcgctcctta tttattagag ccgtgagagc
     4801 ttgggggtgg gggggacaca cctggcgagc aagctcgctt tttaaacata aaatgggggg
     4861 caagggaagg gaggcgggag ggaggggttg ctcataagcc cagggagaga tttataaaag
     4921 ggaacgaaaa agaaaaaaag aaaaaaaaaa aaaaaacttc caacgacaaa ctaaaccagc
     4981 ttacagccca ccaccaagcc acgcccctac aggaagttgc cgcccctctg ggcactcctt
     5041 ttcctgccgt gtcagaatca tcagacaaat aaatctctaa gaaacgtta
//
