LOCUS       XM_039090771            3576 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus sorting nexin 9 (Snx9), transcript
            variant X3, mRNA.
ACCESSION   XM_039090771
VERSION     XM_039090771.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039090771.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3576
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3576
                     /gene="Snx9"
                     /note="sorting nexin 9; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 48 ESTs, 1 long SRA read,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 12 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:683687"
                     /db_xref="RGD:1584466"
     CDS             217..2097
                     /gene="Snx9"
                     /codon_start=1
                     /product="sorting nexin-9 isoform X3"
                     /protein_id="XP_038946699.1"
                     /db_xref="GeneID:683687"
                     /db_xref="RGD:1584466"
                     /translation="MATKARVMYDFAAEPGNNELTVNEGEIITITNPNVGGGWLEGKN
                     SKGEQGLVPTDYVEILPNDGKDPFSCGNSVADQAFLDSLSASTAQANSSSANSNNQVD
                     IWAQVGCVESLSQSPPSSSSSSPSSSINKVGGGSDPWSAWNAPRSGNWDSSDAWGTRT
                     DGAGAQRNSSANNWDTGFGHPQAYQGPATGDDDEWDEDWDDPKSSSPYFKDSEPAEAG
                     GIQRGNSRAGASSMKLPLNKFPGFAKPGMEQYLLAKQLAKPKEKIPIIVGDYGPMWVY
                     PTSTFDCVVADPRKGSKMYGLKSYIEYQLTPTNTNRSVNHRYKHFDWLYERLLVKFGS
                     AIPIPSLPDKQVTGRFEEEFIKMRMERLQAWMTRMCRHPVVSESEVFQQFLNFRDEKE
                     WKTGKRKAEKDELVGVMIFSTMEPEAPDLDLIEIEQKCDAVGKFTKAMDDGVKELLTV
                     GQEHWKRCTGPLPKEYQKIGKALQSLAAVFSSSGYQGETDLNNAITEAGKTYEEIASL
                     VAEQPKKDLHFLMECNHEYKGFLGCFPDIIGAHKGAIEKVKESDKLVATSKITPQDKQ
                     TMVKRVGTMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQALGRFP
                     VM"
ORIGIN      
        1 gcgcagccgg ggactttcag gaactgcagg cgcgggcggc ggcgggagtc gccgagccaa
       61 aggggccgga gcgccgagag cagggctgag gcggagccgc cgcgcccggc cggagccgcc
      121 gaaccgcagc cggagccgtc ctgcccgccc gcctagggcc gaagctccgc agcgcgggag
      181 accagccggc ccgcaggggc cggggaaccg cccgccatgg ccaccaaggc tcgggtcatg
      241 tatgactttg ctgctgaacc tggaaacaat gaactgacag tcaatgaagg ggagatcatc
      301 acaatcacaa acccgaacgt tggtggagga tggctggaag gaaaaaacag caagggagag
      361 caggggctcg ttcctacgga ctacgtggaa attttaccca acgatggaaa agacccgttt
      421 tcttgtggaa attcggtggc cgaccaagct ttccttgatt cgctgtcagc cagcacggct
      481 caagccaact catcttctgc caacagcaat aaccaggtgg acatttgggc tcaggttggt
      541 tgtgttgaaa gtctcagcca gtcaccccct tcttcttctt cttcttctcc ttcttcttcc
      601 ataaataagg ttggtggtgg cagtgacccc tggtcagcct ggaatgctcc cagatctggg
      661 aactgggaca gctctgatgc ctggggcacc aggacagatg gggctggcgc tcagaggaac
      721 agcagtgcca acaactggga caccggcttc ggccatccgc aggcctacca aggaccagcg
      781 actggtgatg atgatgaatg ggatgaagat tgggacgacc ccaagtcctc ctcaccttac
      841 tttaaggatt cagaaccagc tgaagcaggg ggcatccagc ggggaaacag ccgtgcgggt
      901 gcctcttcca tgaagctgcc ccttaacaaa ttccctggat ttgcaaaacc tggcatggag
      961 cagtacctgt tggccaagca gctagcaaaa cccaaagaga aaatccccat cattgttgga
     1021 gattatggcc ctatgtgggt ttatcctacc tctacgtttg actgtgtggt agctgatccc
     1081 cggaaaggtt ccaaaatgta cggtctgaaa agctacattg agtatcagct aacacccact
     1141 aacactaatc gatctgtaaa ccacagatat aagcactttg actggttata tgaacgtctc
     1201 ctggttaagt ttgggtccgc catcccgatc ccttctcttc cagacaagca ggtcacaggt
     1261 cgctttgaag aggagttcat caagatgcgc atggagcggc tccaggcctg gatgaccagg
     1321 atgtgccggc accccgtggt gtcagaaagt gaagttttcc agcagttcct gaatttccga
     1381 gatgagaagg aatggaagac tggcaagagg aaggctgaga aagatgagct ggtgggagtt
     1441 atgatatttt ccaccatgga accagaggct cctgacttgg atttgataga aatagaacag
     1501 aagtgtgacg cggtggggaa gttcaccaag gccatggacg acggcgtgaa ggagctgctg
     1561 accgtggggc aggagcactg gaagcgctgc acagggccct tacccaagga gtatcagaag
     1621 atcgggaagg ccctgcagag cctagcggcc gtcttcagct ccagcggtta tcaaggagag
     1681 acggacctta acaatgcaat cacagaagcc gggaagacat acgaggagat tgccagcctt
     1741 gtggcagagc agccaaagaa ggacctccac ttcctgatgg agtgcaacca cgagtacaaa
     1801 ggctttcttg gctgcttccc ggacatcatt ggtgcccaca agggagcaat agaaaaagtg
     1861 aaagaaagtg acaagctggt tgcaactagt aaaatcaccc cccaggacaa gcagacgatg
     1921 gtgaagcggg ttggcaccat gtcgtatgct ttgcaagctg agatgaatca cttccacagt
     1981 aaccggatct acgattacaa cagcgtcatc cgcctctacc tggagcagca agtgcaattc
     2041 tatgaaacaa tcgcagaaaa gctgaggcag gccctcggcc gcttcccagt tatgtagacc
     2101 agaacggaca caagagaact ccgaagtgct tctttttgac ctgggacaat gcaattcagt
     2161 tttctcccca ccccatcata agagagagag agagagaagg aagaaaacca aaaagacaga
     2221 agttgataaa actcgttttc gtcattagcc agcctaaagg cgttgttgct taggatggcc
     2281 ttccttgttc atttcgacat attagttacc caatggaaat gtctattttt gaaaaatact
     2341 taaatttatc aagatttttg aatgaagaaa taggggttcc tcctcctggt attttacaca
     2401 gaatcgtaat ttatatgtta cctatgatct tccagttctt acccaatgtc agataattaa
     2461 tactaattgc tttcttaaaa atatgaaaaa tgacagaata aaaaatgtat ctttgtatat
     2521 ttttataact ctttcagtcc tttggggacc cttgtctgtt taggggagtc tgcacaccct
     2581 cactggcata gctacagtta agtgctcccg gcatggggaa gaaaagaggg ttccagatca
     2641 cctacacctt cacagtttgt ggtgggtagc ccagcagaag tcctgttagg tgggcacagc
     2701 aggtgagaag agcccaccta cccactgctg cccacaggtt gattccctgt gctgctgtta
     2761 ggtaaattca gcactctgca cgcccactta gctcacagta aggcgtgttt tacactagaa
     2821 gagtaagtca gaaaaggaga tttgtcccac tatcccaggt gggtggccac cctgcttcca
     2881 ggacctccca cctgtcacct tcagtccctc agctgtccat gagatggggg gagggaggtt
     2941 gctgatagga gaggcgcttg tggtccccgg tttggagcag caggctggtc agtattctct
     3001 caaaagatga aagccaagtt cagcacctgt tcctctccgt ttcccagaga atgggaaagt
     3061 taagggctgg catgagcggg gacgtgctgc agcagcaagc tggtgacaag cagagactgg
     3121 ctctgtctgt ggctgtgtcc ccgccttcag agactcctga ccctggctca aggcctgaga
     3181 gcacagagca cacgctgtcc ctccctgcag acagtggtcc ccttccacag ttgccttatg
     3241 atgtgatcct ctgctgtcac ttcctgacct gatgatgata ttacaaagat gggacgtccg
     3301 ggccaacaaa cgtgaatgaa accaaaaata agtagctgag gagatccagt gagcgtgagc
     3361 acgagaactt cctgttccct aatatcaggg gtttgttaat gttttctaag tcatttctcc
     3421 ctacttgatt tttcttttat aaaattccac agaaccgtgt ttatgataca gccgtttaat
     3481 atatgtacaa attgtaaaga acatgtataa atattttaca taaatgtaag agcatgtaga
     3541 agccaatata taaataaatt gtttttaaaa actgta
//
