LOCUS       XM_039090760            3695 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus sorting nexin 9 (Snx9), transcript
            variant X1, mRNA.
ACCESSION   XM_039090760
VERSION     XM_039090760.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039090760.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3695
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3695
                     /gene="Snx9"
                     /note="sorting nexin 9; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 48 ESTs, 1 long SRA read,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 7 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:683687"
                     /db_xref="RGD:1584466"
     CDS             237..2216
                     /gene="Snx9"
                     /codon_start=1
                     /product="sorting nexin-9 isoform X1"
                     /protein_id="XP_038946688.1"
                     /db_xref="GeneID:683687"
                     /db_xref="RGD:1584466"
                     /translation="MQQAVDESGSDVLRLAGKADFSSSYKMLQSGSTASQEARVMYDF
                     AAEPGNNELTVNEGEIITITNPNVGGGWLEGKNSKGEQGLVPTDYVEILPNDGKDPFS
                     CGNSVADQAFLDSLSASTAQANSSSANSNNQVDIWAQVGCVESLSQSPPSSSSSSPSS
                     SINKVGGGSDPWSAWNAPRSGNWDSSDAWGTRTDGAGAQRNSSANNWDTGFGHPQAYQ
                     GPATGDDDEWDEDWDDPKSSSPYFKDSEPAEAGGIQRGNSRAGASSMKLPLNKFPGFA
                     KPGMEQYLLAKQLAKPKEKIPIIVGDYGPMWVYPTSTFDCVVADPRKGSKMYGLKSYI
                     EYQLTPTNTNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPDKQVTGRFEEEFIKMRM
                     ERLQAWMTRMCRHPVVSESEVFQQFLNFRDEKEWKTGKRKAEKDELVGVMIFSTMEPE
                     APDLDLIEIEQKCDAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQS
                     LAAVFSSSGYQGETDLNNAITEAGKTYEEIASLVAEQPKKDLHFLMECNHEYKGFLGC
                     FPDIIGAHKGAIEKVKESDKLVATSKITPQDKQTMVKRVGTMSYALQAEMNHFHSNRI
                     YDYNSVIRLYLEQQVQFYETIAEKLRQALGRFPVM"
ORIGIN      
        1 ggccgcgcag ccggggactt tcaggaactg caggcgcggg cggcggcggg agtcgccgag
       61 ccaaaggggc cggagcgccg agagcagggc tgaggcggag ccgccgcgcc cggccggagc
      121 cgccgaaccg cagccggagc cgtcctgccc gcccgcctag ggccgaagct ccgcagcgcg
      181 ggagaccagc cggcccgcag gggccgggga accgcccgcc atggccacca aggctcatgc
      241 agcaggcggt ggacgaatca gggagtgatg tcttgaggct cgctgggaag gcagactttt
      301 catcatcata taagatgctg cagtccggct ccactgcttc ccaggaggct cgggtcatgt
      361 atgactttgc tgctgaacct ggaaacaatg aactgacagt caatgaaggg gagatcatca
      421 caatcacaaa cccgaacgtt ggtggaggat ggctggaagg aaaaaacagc aagggagagc
      481 aggggctcgt tcctacggac tacgtggaaa ttttacccaa cgatggaaaa gacccgtttt
      541 cttgtggaaa ttcggtggcc gaccaagctt tccttgattc gctgtcagcc agcacggctc
      601 aagccaactc atcttctgcc aacagcaata accaggtgga catttgggct caggttggtt
      661 gtgttgaaag tctcagccag tcaccccctt cttcttcttc ttcttctcct tcttcttcca
      721 taaataaggt tggtggtggc agtgacccct ggtcagcctg gaatgctccc agatctggga
      781 actgggacag ctctgatgcc tggggcacca ggacagatgg ggctggcgct cagaggaaca
      841 gcagtgccaa caactgggac accggcttcg gccatccgca ggcctaccaa ggaccagcga
      901 ctggtgatga tgatgaatgg gatgaagatt gggacgaccc caagtcctcc tcaccttact
      961 ttaaggattc agaaccagct gaagcagggg gcatccagcg gggaaacagc cgtgcgggtg
     1021 cctcttccat gaagctgccc cttaacaaat tccctggatt tgcaaaacct ggcatggagc
     1081 agtacctgtt ggccaagcag ctagcaaaac ccaaagagaa aatccccatc attgttggag
     1141 attatggccc tatgtgggtt tatcctacct ctacgtttga ctgtgtggta gctgatcccc
     1201 ggaaaggttc caaaatgtac ggtctgaaaa gctacattga gtatcagcta acacccacta
     1261 acactaatcg atctgtaaac cacagatata agcactttga ctggttatat gaacgtctcc
     1321 tggttaagtt tgggtccgcc atcccgatcc cttctcttcc agacaagcag gtcacaggtc
     1381 gctttgaaga ggagttcatc aagatgcgca tggagcggct ccaggcctgg atgaccagga
     1441 tgtgccggca ccccgtggtg tcagaaagtg aagttttcca gcagttcctg aatttccgag
     1501 atgagaagga atggaagact ggcaagagga aggctgagaa agatgagctg gtgggagtta
     1561 tgatattttc caccatggaa ccagaggctc ctgacttgga tttgatagaa atagaacaga
     1621 agtgtgacgc ggtggggaag ttcaccaagg ccatggacga cggcgtgaag gagctgctga
     1681 ccgtggggca ggagcactgg aagcgctgca cagggccctt acccaaggag tatcagaaga
     1741 tcgggaaggc cctgcagagc ctagcggccg tcttcagctc cagcggttat caaggagaga
     1801 cggaccttaa caatgcaatc acagaagccg ggaagacata cgaggagatt gccagccttg
     1861 tggcagagca gccaaagaag gacctccact tcctgatgga gtgcaaccac gagtacaaag
     1921 gctttcttgg ctgcttcccg gacatcattg gtgcccacaa gggagcaata gaaaaagtga
     1981 aagaaagtga caagctggtt gcaactagta aaatcacccc ccaggacaag cagacgatgg
     2041 tgaagcgggt tggcaccatg tcgtatgctt tgcaagctga gatgaatcac ttccacagta
     2101 accggatcta cgattacaac agcgtcatcc gcctctacct ggagcagcaa gtgcaattct
     2161 atgaaacaat cgcagaaaag ctgaggcagg ccctcggccg cttcccagtt atgtagacca
     2221 gaacggacac aagagaactc cgaagtgctt ctttttgacc tgggacaatg caattcagtt
     2281 ttctccccac cccatcataa gagagagaga gagagaagga agaaaaccaa aaagacagaa
     2341 gttgataaaa ctcgttttcg tcattagcca gcctaaaggc gttgttgctt aggatggcct
     2401 tccttgttca tttcgacata ttagttaccc aatggaaatg tctatttttg aaaaatactt
     2461 aaatttatca agatttttga atgaagaaat aggggttcct cctcctggta ttttacacag
     2521 aatcgtaatt tatatgttac ctatgatctt ccagttctta cccaatgtca gataattaat
     2581 actaattgct ttcttaaaaa tatgaaaaat gacagaataa aaaatgtatc tttgtatatt
     2641 tttataactc tttcagtcct ttggggaccc ttgtctgttt aggggagtct gcacaccctc
     2701 actggcatag ctacagttaa gtgctcccgg catggggaag aaaagagggt tccagatcac
     2761 ctacaccttc acagtttgtg gtgggtagcc cagcagaagt cctgttaggt gggcacagca
     2821 ggtgagaaga gcccacctac ccactgctgc ccacaggttg attccctgtg ctgctgttag
     2881 gtaaattcag cactctgcac gcccacttag ctcacagtaa ggcgtgtttt acactagaag
     2941 agtaagtcag aaaaggagat ttgtcccact atcccaggtg ggtggccacc ctgcttccag
     3001 gacctcccac ctgtcacctt cagtccctca gctgtccatg agatgggggg agggaggttg
     3061 ctgataggag aggcgcttgt ggtccccggt ttggagcagc aggctggtca gtattctctc
     3121 aaaagatgaa agccaagttc agcacctgtt cctctccgtt tcccagagaa tgggaaagtt
     3181 aagggctggc atgagcgggg acgtgctgca gcagcaagct ggtgacaagc agagactggc
     3241 tctgtctgtg gctgtgtccc cgccttcaga gactcctgac cctggctcaa ggcctgagag
     3301 cacagagcac acgctgtccc tccctgcaga cagtggtccc cttccacagt tgccttatga
     3361 tgtgatcctc tgctgtcact tcctgacctg atgatgatat tacaaagatg ggacgtccgg
     3421 gccaacaaac gtgaatgaaa ccaaaaataa gtagctgagg agatccagtg agcgtgagca
     3481 cgagaacttc ctgttcccta atatcagggg tttgttaatg ttttctaagt catttctccc
     3541 tacttgattt ttcttttata aaattccaca gaaccgtgtt tatgatacag ccgtttaata
     3601 tatgtacaaa ttgtaaagaa catgtataaa tattttacat aaatgtaaga gcatgtagaa
     3661 gccaatatat aaataaattg tttttaaaaa ctgta
//
