LOCUS       XM_006248920            2637 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus sorting nexin 8 (Snx8), transcript
            variant X1, mRNA.
ACCESSION   XM_006248920
VERSION     XM_006248920.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006248920.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006248920.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2637
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2637
                     /gene="Snx8"
                     /note="sorting nexin 8; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 11 ESTs, 14 long SRA
                     reads, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 236
                     samples with support for all annotated introns"
                     /db_xref="GeneID:288504"
                     /db_xref="RGD:1305791"
     CDS             58..1437
                     /gene="Snx8"
                     /codon_start=1
                     /product="sorting nexin-8 isoform X1"
                     /protein_id="XP_006248982.1"
                     /db_xref="GeneID:288504"
                     /db_xref="RGD:1305791"
                     /translation="MTGRAMDPLPSPAVAAAAEAEADEEADPPATGPQTSQVTEWRNL
                     DPRRMQMPQGNPLLLSYTLQELLAKDTVQVELIPEKKGLFLKHVEYEVSSQRFKSSVY
                     RRYNDFVVFHEVLLHKFPYRMVPALPPKRVLGADREFIEGRRRALKRFINLVARHPPF
                     SEDVLLKLFLSFSGSDVQHKLKEAAQCVGDEFTNCKLAARAKDFLPADIQTQFAMSRE
                     LIRNVYNSFYKLRDRAERIASRAIDNAADLLIFGKELSALGSDTTPLPSWAALHLSTW
                     GSLKQALKGLSVEFALLADKAAQQGKKEENDVVEKLNLFLDLLQSYKDLCERHEKGVL
                     HKHQRALHKYGLMKRQMMSAAHGREPESVEQLESRIVEQENVIQTMELRNYFSLYCLH
                     QETQLVHVYLPLTSHILGAFVNSQIQGHKEMSKVWNDLKPKLSCLFAGPHSVLTPPRS
                     PQEDGMCPH"
ORIGIN      
        1 gtgggcgggg ttgactgggc gggcgcggga ggaagtcacg tgggcgagcg ggctcacatg
       61 actggccgcg cgatggaccc gctgccctcg ccggcagtcg ctgcagcagc tgaggcggag
      121 gctgacgagg aggcggatcc gccggcgaca ggcccacaaa catcccaggt caccgagtgg
      181 aggaacctgg accccaggcg aatgcagatg cctcagggga atccgttgct gctgtcctac
      241 accctgcagg agctgctggc caaggacacg gtgcaggtgg agctcatccc tgagaagaag
      301 ggcctgttcc ttaagcatgt ggagtacgag gtttccagcc agcgcttcaa gtcctccgtg
      361 tacagacgct acaatgactt cgtggtcttc catgaagtgc tgcttcacaa gttcccgtac
      421 cgcatggtac cagcccttcc acccaagaga gtgctgggag ccgaccggga gttcatcgag
      481 ggccgccgga gggccctgaa gcgcttcatc aacctggtgg cccggcaccc gcccttctct
      541 gaggatgtgc tcctgaagct cttcctctcc ttcagtggct cagatgttca gcacaagctc
      601 aaggaggcgg cccagtgcgt gggagatgag ttcacgaact gtaagctggc tgctagggcc
      661 aaggacttcc tcccagctga catccagact caatttgcca tgagccggga gctgattcga
      721 aatgtctaca acagcttcta caaacttcga gacagagccg agcggattgc gtcccgggcc
      781 attgacaacg ctgctgatct tctcatattc gggaaggagc tcagtgcttt gggttccgac
      841 accacccctc tgccctcctg ggctgctctg cacctcagca cgtggggctc cctgaagcaa
      901 gcgctcaagg gcctgtccgt ggagtttgct ttgcttgcag acaaagctgc acagcagggt
      961 aagaaggagg agaatgatgt ggtggagaag ctgaacctct tcttggattt gctgcagtcc
     1021 tacaaagacc tgtgtgagcg gcatgagaag ggcgtgcttc acaagcatca gcgagcactg
     1081 cacaagtacg gcctgatgaa gaggcagatg atgagtgcgg cacatggccg agagcccgag
     1141 tctgtggagc agctggagtc acgaattgtg gagcaggaga acgtgatcca gactatggaa
     1201 ctccgaaact acttctccct gtactgtctg caccaggaga ctcagcttgt ccatgtctac
     1261 ctgcctctca cctctcacat cctgggggcc ttcgtgaact cccagatcca agggcacaag
     1321 gagatgagca aggtgtggaa tgacctgaag ccaaagctga gctgcctctt tgctggacct
     1381 cacagtgtgc tgacaccacc acgctccccg caggaggatg gcatgtgtcc ccactagtga
     1441 caaggcccac gacagagctc cctgtggcct cactaaaacc tctttgcaaa cagtgtgtcc
     1501 ctggctgatt ccctctaggc agcagccatt cccccgagct gcctgtgggc tgtgctggcc
     1561 atctttgtgt ctccctgttc ctgggcagga ggtcttcgtg cccccagccc gccccttggc
     1621 ctgtttctca ggtcggtagt gggaaacgag ggtgctttgg actggattgt gcccgatgcc
     1681 cagtgctaag ggccttttgt acccagtaag tggcatctag gggagcctag gggttaacct
     1741 agcagcaaag aaatgggagg actggccctg tccggtgtgg cctggcaagg agctggtcaa
     1801 tctctgagga acccaagtac actaggcctg cagacattct tcgaggggta ttcaaggcca
     1861 ggcgagtggt ctcacacagg aggaggggtt gagtgtgcag tgtgtggagc ttaggaggac
     1921 atattgcact ccagtacgat ccttcgaggt ccagggcctg tcagggtcca atggatgagt
     1981 ttcctgtgtt gagtgaggaa gggttgttgg ggcactggag atgggcatcc ctgttgggct
     2041 gtccgtcagc aggctctgcg tggacgagag ttgtttcctc tgccggccgc tcactggctg
     2101 tgcgctgcag gcctgtggcc ctcaaagctg gcgtagagcc tgccttttct catgcagtct
     2161 ttccctgact gggctgtagg tgcccgactc caaacttgag gttcctctcc agggttcaaa
     2221 ggaatgcaga gtccctgtac ccttctgggc atcctgctgt ccgagcctgt gctgcaccac
     2281 agccatgctt ggggctgcta gaaagacgga gaagcacaag tatcaccgga tctcccgcct
     2341 gcctgtccct tttcctgggc tgggtggggc ccagctgtag ccttaactgg acggtcctgg
     2401 ggccatcaga gtaagagtga agggaagagc tttttttttt tttttttttt ttttttgatg
     2461 ccactctgac tgaagaagct gacagcaggg gcagaggggc tctgggacac tgctgtgtgg
     2521 actctgggtt aagggcgtga agaggctggt gctgtgggat tcggctcgat gaatgaagca
     2581 ctttatggac tgcgggaatc agttactgcc acacccaata aactggaagt gtttaca
//
