LOCUS       NM_001012083            1802 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus sorting nexin 7 (Snx7), mRNA.
ACCESSION   NM_001012083 XM_227630
VERSION     NM_001012083.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1802)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1802)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC082033.1.
            
            On Feb 11, 2005 this sequence version replaced XM_227630.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC082033.1, SRR8487227.32224.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1802
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q42"
     gene            1..1802
                     /gene="Snx7"
                     /note="sorting nexin 7"
                     /db_xref="GeneID:310815"
                     /db_xref="RGD:1305480"
     exon            1..160
                     /gene="Snx7"
                     /inference="alignment:Splign:2.1.0"
     exon            161..343
                     /gene="Snx7"
                     /inference="alignment:Splign:2.1.0"
     CDS             173..1336
                     /gene="Snx7"
                     /codon_start=1
                     /product="sorting nexin-7"
                     /protein_id="NP_001012083.1"
                     /db_xref="GeneID:310815"
                     /db_xref="RGD:1305480"
                     /translation="MDMNSFSPMMPTSPLSMINQIKFEDGPDLKDLFITVDAPESHVT
                     TIETFITYRIVTKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIV
                     KGMVERFNDDFIETRRKALHKFLNRIADHPTLTFNEDFKVFLTAEAWELSSYKKQGPG
                     LLSRMGQTVRAVASSMRGVKNRPDEFTEMNNFIETFSQKINLIDKISQRIYKEERDYF
                     DEMKEYGPIHTLWSTSEEDLVDTLKGIASCIDQCCKATEKRMSGLSEALLPVVHEYVL
                     YSEMLVGVMKRRDQIQAELDSKVEALTYKKADADLLTEEIGKLEDKVECANNALKADW
                     ERWRQNMQNDLRSAFTDTAEENIRYYEQCLATWESFLTSQTDLPLEEDPEDKL"
     exon            344..454
                     /gene="Snx7"
                     /inference="alignment:Splign:2.1.0"
     exon            455..619
                     /gene="Snx7"
                     /inference="alignment:Splign:2.1.0"
     exon            620..818
                     /gene="Snx7"
                     /inference="alignment:Splign:2.1.0"
     exon            819..1018
                     /gene="Snx7"
                     /inference="alignment:Splign:2.1.0"
     exon            1019..1105
                     /gene="Snx7"
                     /inference="alignment:Splign:2.1.0"
     exon            1106..1258
                     /gene="Snx7"
                     /inference="alignment:Splign:2.1.0"
     exon            1259..1760
                     /gene="Snx7"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggacggcgag cgcctggcgt cgggctcctc cgagctggcg gtcggggaga gcccgcgggg
       61 cggcgccccg atcccgagtg gcagcggctc ctgcagccta ctgcaggccg atgtgctgga
      121 tctagacgag gaagaggacg acctggaggt gttcagtaag gatgcctcac tgatggacat
      181 gaactcattt agccctatga tgccaacatc ccctttgtcg atgataaacc aaatcaagtt
      241 tgaagatgga ccagatttaa aggatctctt cattacagtt gatgcaccag agagccatgt
      301 cactacaatt gaaactttca tcacttacag gatcgtaacc aagacatctc gtggggagtt
      361 tgattccagt gagtttgaag tcaggcgacg ttaccaagat ttcctttggt tgaaggggaa
      421 actggaagaa gctcatccca ctctcattat tcccccattg ccagagaagt ttattgtgaa
      481 aggcatggtg gaacgcttca acgatgactt cattgagacc cgcaggaagg cactacacaa
      541 gtttctgaac aggatcgccg atcatccaac tttaacattt aatgaggatt tcaaggtttt
      601 cctcactgca gaagcctggg aactctcttc ctataagaag caagggcctg gcttgctgag
      661 caggatgggg cagacagtca gagcagtggc gtcttctatg cgaggagtga agaaccggcc
      721 agatgagttc acggagatga ataacttcat tgaaacattc agccagaaaa taaacttgat
      781 agataaaata tctcagagga tttacaagga agaaagggac tattttgatg aaatgaaaga
      841 atacggccct attcatactc tatggtccac ctcagaagaa gacctggttg atacgttgaa
      901 aggcattgcc agctgcattg accagtgctg taaggccacg gagaagcgga tgtctggcct
      961 gtccgaggct ttgctccctg tcgtccatga gtatgtgctt tacagtgaga tgttagtggg
     1021 tgttatgaaa agaagagatc aaatccaagc agaactggat tccaaagtag aagctttgac
     1081 ctacaagaaa gccgatgctg atctgcttac agaggaaatc gggaaacttg aagataaagt
     1141 ggagtgtgct aataatgccc tgaaagcaga ctgggaaagg tggaggcaga acatgcagaa
     1201 tgacctcagg tcagcattta cagacacggc cgaggagaac atccgctact atgagcagtg
     1261 ccttgctaca tgggaatcat tcctcacatc acagactgac ctcccgttgg aagaagatcc
     1321 cgaagataaa ctttgatcct atggaagact cctgtttgat ctttgagaga tagcgtctat
     1381 caaccaaagt tatttttttc tggattggct gtgcccttta taaagaggat gaaaaatgat
     1441 tttgcactgt ctggaaaacc aaccatataa aaactcaggt attccaggtc atcaacatga
     1501 atttgtgata taagtatatc tatctagata tataggtcta ttatgtgata tattctacag
     1561 atctacagat ctgttatata gatagatatt tatctatgtc tatgtggata gaaagatatt
     1621 tagtgtaatt gtaattatgt tgttaaattt atgtgccatt aattacatat agaggttttt
     1681 tttcttaata ttttacagtg gaatattaaa tttttcaata tgttgcaaag acttggtttt
     1741 aataaaatct ttaataagaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     1801 aa
//
