LOCUS       XM_006230940            1733 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus sorting nexin 32 (Snx32), transcript
            variant X1, mRNA.
ACCESSION   XM_006230940
VERSION     XM_006230940.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006230940.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006230940.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1733
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1733
                     /gene="Snx32"
                     /note="sorting nexin 32; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 11
                     ESTs, and 100% coverage of the annotated genomic feature
                     by RNAseq alignments, including 180 samples with support
                     for all annotated introns"
                     /db_xref="GeneID:361708"
                     /db_xref="RGD:1560591"
     CDS             104..1612
                     /gene="Snx32"
                     /codon_start=1
                     /product="sorting nexin-32 isoform X1"
                     /protein_id="XP_006231002.1"
                     /db_xref="GeneID:361708"
                     /db_xref="RGD:1560591"
                     /translation="MSQLRRIMEEHQQEAGKESKPSSTSVDLQGDSPLQVEISDAVSE
                     RDKVKFTVQTKSGLPHFAQPEFSVVRQHEEFIWLHDTYVENEEYAGLIIPPAPPRPDF
                     EASREKLQKLGEGNSSITREEFARMKQELEAEYLAIFKKTVAMHEIFLQRLAAHPTLR
                     RDHNLSVFLEYSQDLSVREKNRKEVLGGFLKSIVRSADEVLITGISGLKEVDDFFEHE
                     RTFLVEYHTRIRDTCQRADRVMHSHKCLADNYIPLSAALSSLGTQAVNQLKRSFLKLA
                     ELFERLRKLEGRIASDEDLKLSDMLRYYMRDSQAAKDLLYRRLRALADYENANKALDK
                     ARTRNREVQPAESHQQLCCQRFERLSDSAKRGEPRRLASPHSKQPPLPLLLSVSLQSS
                     WTSSLAGSPLSGRISSSWQSWSSSTPGPAPCFSRTPLLPLKESLSEISCCSPMAAVLS
                     LLPTPCKRAPFPPMVATIHTLTLPWANPGPKAVSCLCLTGQHGGHMGPSGGT"
ORIGIN      
        1 ggaggcggca gctagtgtca atgtcagcgg atagcatccc tacaagattc cctcatccaa
       61 cctcttggaa cgcgcgggcc gtgacctgtc gtaggattct tgtatgtccc agctaaggag
      121 aatcatggag gagcatcaac aggaagctgg gaaagagagt aagccttcct ccacgtcagt
      181 cgatctgcag ggggacagtc ccttacaggt ggagatttct gatgcagtga gtgagcggga
      241 caaggtgaag ttcactgtgc aaaccaagag tggtctccct cactttgccc agcctgagtt
      301 ctcagtggtt cggcagcacg aagagttcat ctggctacac gacacctatg tggagaatga
      361 agagtacgcc ggcctcatca ttcccccagc ccctcccagg ccagactttg aggcttcacg
      421 ggaaaagttg cagaagttgg gtgaggggaa cagctccatc acccgggaag aattcgccag
      481 gatgaagcag gagctagaag cggagtactt ggccatcttt aagaagactg ttgcgatgca
      541 tgaaatcttc ctgcagcgcc tggcagccca tcccaccctg cgtcgggacc acaacctctc
      601 tgtcttcttg gaatatagtc aggatctgag cgttcgagag aagaacagga aggaggtctt
      661 gggagggttc ctgaagagca tcgtcaggtc tgcagatgaa gtcctcatca ccggcatatc
      721 agggctcaag gaggtagatg acttctttga gcatgagagg accttcctgg tagaatacca
      781 cacccgaatc cgggacacct gccagagggc cgaccgtgtt atgcactccc acaagtgcct
      841 ggcagacaac tacatccctc tctctgctgc actgagcagt ctcggaaccc aggcggtcaa
      901 ccaactgaag aggagcttcc tgaagctggc agagctcttc gaacgactga gaaagctgga
      961 aggcaggata gcctctgatg aggacctgaa gctgtctgac atgctgaggt actacatgcg
     1021 agactcacag gcagccaagg acctgttgta ccggcggctt cgggcactgg ctgactatga
     1081 gaatgctaac aaggcactgg acaaagctcg gactaggaac cgggaggtgc agccggcaga
     1141 gagccaccaa cagctgtgct gccagcgctt cgagcgcctc tctgactccg ccaaacgggg
     1201 tgagccccga aggctggcat caccccacag taaacagcca cccttgccct tactcctttc
     1261 tgtttctctg cagagctcat ggacttccag tctcgccggg tctcctcttt ccggaagaat
     1321 ctcatcgagt tggcagagct ggagctcaag cacgcccggg ccagcaccct gcttctccag
     1381 aacacccttg ttgcccttaa aggagagcct tagtgaaatc agctgctgct ctccaatggc
     1441 agctgtcctc agtctcctac ccactccttg caaaagagcc cccttccctc ccatggtggc
     1501 cactatccac acccttactc ttccttgggc aaatccaggc ccaaaggcag ttagttgcct
     1561 ttgcctgaca gggcagcacg ggggacacat gggaccctcg ggagggacct agccctcccc
     1621 acaggcagac tgagtcaaag cttcacacct ccatccagcc actggttttt gaagagttca
     1681 ctggcatccc cacctgctcc ttacaaataa acagctctgt tttcctgcca gga
//
