LOCUS       NM_001106651            3128 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus sorting nexin family member 30 (Snx30), mRNA.
ACCESSION   NM_001106651 XM_001056769 XM_001056835 XM_232945
VERSION     NM_001106651.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3128)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474039.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_232945.4, XM_001056835.1, XM_001056769.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132291,
                              SAMD00132300 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3128
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q24"
     gene            1..3128
                     /gene="Snx30"
                     /gene_synonym="RGD1311367"
                     /note="sorting nexin family member 30"
                     /db_xref="GeneID:298033"
                     /db_xref="RGD:1311367"
     exon            1..377
                     /gene="Snx30"
                     /gene_synonym="RGD1311367"
                     /inference="alignment:Splign:2.1.0"
     CDS             222..1535
                     /gene="Snx30"
                     /gene_synonym="RGD1311367"
                     /codon_start=1
                     /product="sorting nexin-30"
                     /protein_id="NP_001100121.1"
                     /db_xref="GeneID:298033"
                     /db_xref="RGD:1311367"
                     /translation="MAGGPPKALPSTGPQSLRDMPHPLAGSSSEEAVGGDSTPSPDLL
                     MARSFGDKDLILPNGGTPAGTSSPASSSSLLNRLQLDDDIDGETRDLFVTVDDPKKHV
                     CTMETYITYRITTKSTRVEFDLPEYSVRRRYQDFDWLRNKLEESQPTHLIPPLPEKFV
                     VKGVVDRFSEEFVETRRKALDKFLKRITDHPVLSFNEHFNVFLTAKDLNAYKKQGIAL
                     LTRVGESVKHVTGGYKLRSRPLEFAAIGDYLDTFALKLGTIDRIAQRIIKEEIEYLVE
                     LREYGPVYSTWSALEGELAEPLEGVSACIGNCSTALEELTDDITEEFLPVLREYILYS
                     DSMKGVLKKRDQVHAEYEAKLEAVALRKEDRPKVPADVEKCQDRMECFNADLKADMER
                     WQGNKRNDFRQLLVGLADKNIQYYEKCLMAWESIIPLLQEKQEAK"
     exon            378..569
                     /gene="Snx30"
                     /gene_synonym="RGD1311367"
                     /inference="alignment:Splign:2.1.0"
     exon            570..680
                     /gene="Snx30"
                     /gene_synonym="RGD1311367"
                     /inference="alignment:Splign:2.1.0"
     exon            681..839
                     /gene="Snx30"
                     /gene_synonym="RGD1311367"
                     /inference="alignment:Splign:2.1.0"
     exon            840..1035
                     /gene="Snx30"
                     /gene_synonym="RGD1311367"
                     /inference="alignment:Splign:2.1.0"
     exon            1036..1235
                     /gene="Snx30"
                     /gene_synonym="RGD1311367"
                     /inference="alignment:Splign:2.1.0"
     exon            1236..1322
                     /gene="Snx30"
                     /gene_synonym="RGD1311367"
                     /inference="alignment:Splign:2.1.0"
     exon            1323..1475
                     /gene="Snx30"
                     /gene_synonym="RGD1311367"
                     /inference="alignment:Splign:2.1.0"
     exon            1476..3128
                     /gene="Snx30"
                     /gene_synonym="RGD1311367"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtgggcggcg tggcgctgct accagggcgc agggccgtag gtgctgggga tcgcggcgac
       61 ttagcccacg gatctgcggt gtgttgctca ggaaagctca tcctcccggg caggagaagc
      121 atcgggcgaa ggctgccccc accgactagt gcagggcctc aggccgagta gggccgagag
      181 ctacgggagt aagcggcggc gggtcccgag cgcagcgcgc catggcgggc gggcccccca
      241 aggccctgcc gtccacgggg ccccagtcct tgcgcgacat gccccacccg ctagcgggct
      301 ccagcagcga ggaggccgtg ggaggcgaca gcacgcccag cccggaccta ctgatggccc
      361 gcagcttcgg tgacaaggat ctcatcttgc ccaatggtgg tactccagca ggcacttcaa
      421 gcccagcttc ttcatcttcg cttttgaaca gacttcagct ggatgatgac attgatggtg
      481 aaaccagaga tctctttgtc acagttgatg atcccaagaa gcatgtctgc acaatggaga
      541 cctacatcac gtacaggatc accaccaaaa gcacacgggt ggagtttgac ttgccagagt
      601 attccgttcg tcgacgatac caggatttcg actggttgag gaacaaactg gaagagtcgc
      661 agcccactca tctcattccc ccacttcctg agaagtttgt ggtgaagggt gtcgtggatc
      721 gtttttcaga agagtttgtg gagaccagaa gaaaagcgtt ggacaaattc ctaaaaagga
      781 ttacagatca cccagtgctc tctttcaatg aacacttcaa tgtgttcctc actgctaagg
      841 acctgaatgc ctacaagaag caggggatag cactgctgac cagagtgggg gagtcggtca
      901 agcatgtcac tggaggctac aagctgcgga gtcggcctct ggagtttgca gccatcggtg
      961 actacttaga cacttttgca ctcaaactgg gaaccattga tcggatagcc cagcggatca
     1021 tcaaagaaga aatagagtac ctcgtggagc tgagggagta tgggcctgtg tattccacgt
     1081 ggagcgcctt ggaaggtgag ctggcggagc ccctggaggg tgtgtcagcc tgcattggga
     1141 actgctccac agccttggaa gagctgacgg atgacataac agaagagttt ctgcctgtgc
     1201 tcagggaata cattctatac tctgactcca tgaagggtgt gttgaagaag agggaccaag
     1261 ttcatgcaga gtatgaagcc aaactggaag ctgtggctct gaggaaagaa gatcgcccca
     1321 aggtgccagc agatgtggag aagtgccagg acaggatgga gtgcttcaac gcagacctga
     1381 aggctgatat ggagaggtgg cagggcaaca agcgaaatga cttccggcag ctgctcgtgg
     1441 gcttggctga caagaatatc cagtattatg agaagtgcct catggcgtgg gagtcgatta
     1501 ttccactact gcaagagaaa caagaggcca agtagctttg gttttggaga aaagactctt
     1561 ctgcctccac agggcatggt accctgaacc tgaatgtccc tgcagtgccg gagaggtcgc
     1621 cgtgggaaaa cagcacaaca ccacctcttg agtgtgtact ttctccccac ccacccccag
     1681 tcgttttcag ttagtattta ttccttggag tctgtgaggc tgtaatcatc tctcagcaga
     1741 agcatacctc catattgtga aggaacctct taatggaaca ctatgaagac ttttgaaact
     1801 gaggggcagg ataaccccca cttgacctgt gacatcactt tgggagcatc ccagttgcca
     1861 ttgtgggaca gaaccccagt cctgcatttc ggggacatgg ggaggcatga agagggcagc
     1921 tgcggcttgc tgtggagaca tcttagctct gcactttacc cgtgagggca ttaatgtgac
     1981 ccagcatgga aggaggtgta ggtaccttct ctctcggaaa gtccttaatt tacagtggcc
     2041 tgtggctgtg gctgcggctc tggctgtggc tgtggctgtg gcaggtctac tgcctgctcg
     2101 tgatgagtgg catctatgta cttgtttctg gttcacacgg ggccacctaa atctgtgtct
     2161 gggagcatcg atgcttgagt gagcaagcca gcgtccttgt ccttaatgga tgcctcagga
     2221 tcttgtttct gaccccagaa tgcagcagag gagaagcttt ttggtgtgaa ctggataaaa
     2281 aaaggtgcat ttttctctgt gaaggtcttg gtgtgtgtgt tttccgtgtt aactgtcatc
     2341 atggttggga ttagacctgt ttgcaaacag ctgctgtcaa tgacactcct gtgtgccaag
     2401 ccccagctct gatgtctgct ttgtgcaatt tgcctttact tcaccaaaaa tgtctcattt
     2461 aatctgtctg ccatgcccgc tgactgtctg ggcagccttg cggtgagggc tgtgtgctgc
     2521 attattgctg tcactatgtg taaactcagt gtgactgctc tacatgagtg ttttaaccct
     2581 cacgattctg tggccagaaa gaaaacagca tctgcaggtc cctcagagac gagaagagtg
     2641 agcgacatcg tgctctttgc ttctggctat gtagaaatcc tcatttgtag ctaaaatctg
     2701 ggggctgcag ctgtgcttaa agtcttcatt tgaagctttc caaattgcca taagccaaca
     2761 atcagaaaga atctctctct tccataccgt tgctcttgct aaaaagaagc tgcatttttg
     2821 tgttctttta tctctggctc tttgctaaaa atccctagat ctggctgcag gtatacggaa
     2881 ggggctttgt ttttaaggcg aagcagtcaa gcactgcctc atatacaagt tcatttgcaa
     2941 atccaatcat catccagcat gctaagtcct gtaattccct ctaatatgga gtcagctgca
     3001 ttggggacac catgggaccg caggtagaca gcatgaagca attgtcctct cagatttgac
     3061 agatccgtga tagagataat aatccccaca tctatcggta cttgcccaaa cctatctgtg
     3121 ccacccca
//
