LOCUS       XM_224863               3707 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus sorting nexin 25 (Snx25), transcript
            variant X1, mRNA.
ACCESSION   XM_224863
VERSION     XM_224863.8
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_224863.9.
            
            On Jan 21, 2021 this sequence version replaced XM_224863.7.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3707
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3707
                     /gene="Snx25"
                     /note="sorting nexin 25; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 30 ESTs, 6 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     166 samples with support for all annotated introns"
                     /db_xref="GeneID:306471"
                     /db_xref="RGD:1310150"
     CDS             271..3231
                     /gene="Snx25"
                     /codon_start=1
                     /product="sorting nexin-25 isoform X1"
                     /protein_id="XP_224863.6"
                     /db_xref="GeneID:306471"
                     /db_xref="RGD:1310150"
                     /translation="MHRDATDSSGARRGPTSAADACRAARGSADGQRTADRPGGGWRG
                     PAAVAALAVLALCCLVPGWGPAAGTGPGAVLLRLSLYLSCAAAALLLGTLVALVCWSP
                     RAQPPDFASSWSRLAAAVRCPLRSPVYGNPQETAQGRRVVISHNMDRALKDVFDYSYR
                     DYILSWYGNLSRDDGQLYHLLLDDFWDIAKQIRYRLSHVDVVKVVCNDIVKALLTHFC
                     DLKAATARHEEQPRPFVLHACLKDSHDEVRFLQTCSQVLVFCLLPSKDIQSLSLRTML
                     AEILTTKVLKPVVELLSNPDYINQMLLAQLEYREQMSGHHKRAYTYAPSYEEFIKLIN
                     SNSDVEFLKQLRYQIVVEIIQATTISSFPQLKRHKGKESAAMKTDLLRARNMKRYINQ
                     LTVAKKQCEKRIRILGGPAYDQQEDGVSDEGEGPQSQKILQFEDIMTNPFYRERFGTY
                     MERIDKRALVGFWESVEHLKNANKNEIPQLVSEMYQNFFVESKEIPVEKSLYKEIQQC
                     LVGNKGIEVFSKIQGDVYDVLRDRYYPSFLVSDLYEKLIHEEEEETPDSQLASGKDEL
                     GSGGEAGEEVVEGTSGVSDPASFAVIKLRELSEKLEYKRQALSSIQNAPKPDKKIISK
                     LKDEILVIEKECTDLQLHMARTDWWCEHLGLWKASITSAEVTEENGEQMPCYFVRVNL
                     QEVGGVETKNWTVPRRLSEFQNLHRKLSECVPSLKKVQLPSLSKLPFKSIDHKFLEKS
                     KNQLNKFLQNLLSDERLFQSEALYAFLSPSPDYLKVIDVQGKKTSFSLSSFLEKLPRD
                     FFSHQEEEIEEDSDLSDYGDDVDGKKDALAEPCFMLIGEIFELRGMFKWVRRTLIALV
                     QVTFGRTINKQIRDTVNWIFSEQMVVYYISAFRDAFWPNGKLAPPTRIRSEAQSQETK
                     QRAQQKLLENIPDTLQSLVGQQNARHGIIKIFKALQETRANKHLLYVLMELLLTELCP
                     ELRAHLDQLKAGQV"
ORIGIN      
        1 ctcgcggtcc cgctacctgg gcacgccagg tcggcgggca gctgcgggcc cagcgcgggg
       61 cggcggcacc gaggggggcg cggcggtgtc tgttggagcg gttcccgcgc agggccgccg
      121 gcgagggcat gagcacgggc tgcccttgcc tcgcgagcgg cggcgggagc ggcgaggcgg
      181 ccgggcgccg cgcacaggcc acggcccggg gcggcgccgg ggggcagcgg gccgggagat
      241 gagcctgtcg ccagcggccc aggaagcagc atgcaccgcg atgccaccga cagcagcggc
      301 gcccgccgcg gccccacgtc cgccgcagac gcctgccgcg ctgcccgggg ctccgcggac
      361 ggacagcgga cggcggaccg cccgggcggg ggctggcggg ggcccgcagc cgtggcggcc
      421 ctggccgtgc tggcgctgtg ctgcctggtc ccgggctggg gaccggcggc gggcacgggg
      481 ccgggcgcgg tactgctgcg cctcagcctg tacctgagct gcgccgcggc cgccttgctg
      541 ctggggacac tggtcgcgct cgtctgctgg agcccgcgcg cccagccgcc ggacttcgcc
      601 tcttcctgga gccggctggc ggcggccgtc cgctgtccgc tgcggagccc tgtgtatgga
      661 aatccacagg agacagctca gggcagaaga gtggtcattt ctcacaatat ggatcgagct
      721 ctgaaagacg tgttcgacta cagttacaga gactacattc tctcctggta cggcaacctc
      781 agcagagatg atgggcagct ctaccatttg ctcttggatg acttctggga tattgccaag
      841 cagattcgct acaggctgag tcacgtggat gtggttaaag ttgtctgtaa tgatattgta
      901 aaggctttgc tcactcactt ctgtgacctg aaagctgcta ctgccagaca tgaagaacag
      961 ccaaggcctt ttgtgttgca tgcatgcttg aaggactcac acgatgaagt aagattcctt
     1021 caaacgtgtt ctcaggttct ggtgttttgc cttctccctt cgaaggatat ccagtctctc
     1081 agcttacgta caatgctcgc agagattctc acaacaaaag tcttgaagcc ggtggtggaa
     1141 ttgctgagta accctgatta cattaaccag atgcttctgg cgcagttgga gtatagggag
     1201 cagatgagtg gacatcacaa gagagcctac acgtacgctc cttcttacga ggagttcatc
     1261 aagctcatca acagcaactc tgacgtggag ttcctgaagc agctcaggta tcaaattgta
     1321 gtggaaataa tccaagcaac tacaattagc agctttcccc agctgaagag gcacaagggt
     1381 aaggaatctg ctgccatgaa aactgatctc ttgcgggcca ggaacatgaa aaggtacatt
     1441 aaccagctga ctgtggcaaa gaagcagtgt gagaagagaa tccgaatcct gggaggtcct
     1501 gcctatgacc agcaagagga cggggtctcg gatgaagggg aagggcctca gagccaaaag
     1561 attcttcagt ttgaagatat tatgaccaat cctttctacc gagagcgctt tggaacatac
     1621 atggaacgga tcgacaagcg ggctttggtt ggcttttggg agtctgtgga acacctgaag
     1681 aatgctaaca agaatgaaat tccacaatta gtgagtgaaa tgtatcagaa tttttttgtg
     1741 gaaagcaagg aaattcctgt ggaaaagtca ctttacaaag aaatccagca gtgcctcgtg
     1801 ggaaacaagg gtatcgaggt gttcagcaaa atccaaggag atgtgtacga tgtactgagg
     1861 gataggtatt acccctcctt ccttgtcagc gacctgtatg agaagctcat acatgaggag
     1921 gaggaagaga cacctgactc tcagcttgcc tcggggaagg atgaactggg ttcaggaggt
     1981 gaggctggtg aggaggttgt agaaggcacc agtggggtca gtgatccagc cagctttgct
     2041 gtaatcaaac ttcgagagct aagtgagaaa cttgaatata aaaggcaagc tctaagttct
     2101 attcaaaatg caccaaaacc tgataagaag attatttcca agctgaagga cgaaatactt
     2161 gtgatagaga aagagtgcac agatcttcag ctgcacatgg cgagaacaga ttggtggtgt
     2221 gagcacctgg gcctgtggaa agcctccatc accagcgcag aggtgacaga agagaatggt
     2281 gagcaaatgc cttgttattt tgtcagggta aatctacaag aagttggagg agttgaaact
     2341 aaaaactgga ctgtaccaag aaggctcagt gagtttcaga atttacatcg gaaacttagt
     2401 gagtgtgtcc cttctttaaa aaaagtccag ttgccttctc tcagtaagct gcctttcaaa
     2461 tctatagatc acaagttcct ggaaaagtca aaaaatcagt taaataagtt tttacagaac
     2521 ctgctttcag atgaaagact gtttcagagt gaagcacttt atgccttttt gagcccttct
     2581 cctgactacc tcaaggtcat tgatgtgcag gggaaaaaaa cctccttctc attatcttca
     2641 ttcttggaaa aacttcctcg tgatttcttc tcccatcagg aggaggagat agaagaggac
     2701 agcgacctgt ccgattacgg ggacgatgtg gacgggaaga aggacgcctt ggctgaaccg
     2761 tgtttcatgc tcatcgggga gatttttgaa cttcgaggaa tgtttaaatg ggtgcgaaga
     2821 acattgattg ctctcgttca ggtcacattt ggaagaacca tcaacaagca aatccgggac
     2881 acggtgaact ggatcttcag cgagcagatg gtggtttact acattagtgc tttccgagat
     2941 gctttctggc caaatgggaa actggcacca ccaacaagaa tcagaagcga agcacaaagt
     3001 caggaaacaa aacagagagc acagcaaaaa ctgcttgaaa acattccaga tacacttcag
     3061 agccttgttg gacagcaaaa tgcccgccat ggtataataa aaatattcaa ggcgctgcaa
     3121 gaaacaaggg ccaacaagca cctgttatat gtgctgatgg agctgctgct gacagagctc
     3181 tgtcctgagc tgagagctca cctggatcag ctgaaagctg gtcaagtcta agactgcaca
     3241 aagcaaccgc cagagaaatg tctgtgtaaa aatagacatt aaacattttc ctcttttcca
     3301 cagagggccc gacaagaacc atactgattt ttattttcat gcctccctct agttttatgc
     3361 caagtgagca gaatcagagg gagaggactg acgctgtggt aggcaataga aaacagactt
     3421 taaagctcac catgctgact gaaatacaaa tgttaatatg tgataagaac ataggaaata
     3481 ttttaaatat ttatgaaaac agttttgttg ttaaatgaca aagtctgaat attgtacagt
     3541 taatctcctc actgaggatt ctgaccattc ctgtgtctcc cgtgtattga agaccactgt
     3601 tgtgcaatgc ttggtgtaaa gttattgtga aaattttatt gtttttattt ttaccaaaga
     3661 tttcccatag tttgaagcat ttgaagcaat aaaatacaaa aaaagaa
//
