LOCUS       NM_001106832             836 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus sorting nexin 22 (Snx22), mRNA.
ACCESSION   NM_001106832 XM_001075684 XM_236361
VERSION     NM_001106832.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 836)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Jun 3, 2021 this sequence version replaced NM_001106832.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMEA5760393, SAMEA5760400
                              [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-133               JAXUCZ010000008.1  75507807-75507939   c
            134-217             JAXUCZ010000008.1  75507376-75507459   c
            218-322             JAXUCZ010000008.1  75506899-75507003   c
            323-417             JAXUCZ010000008.1  75506228-75506322   c
            418-450             JAXUCZ010000008.1  75505884-75505916   c
            451-518             JAXUCZ010000008.1  75505658-75505725   c
            519-836             JAXUCZ010000008.1  75505059-75505376   c
FEATURES             Location/Qualifiers
     source          1..836
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q24"
     gene            1..836
                     /gene="Snx22"
                     /note="sorting nexin 22"
                     /db_xref="GeneID:300796"
                     /db_xref="RGD:1305042"
     exon            1..133
                     /gene="Snx22"
                     /inference="alignment:Splign:2.1.0"
     CDS             59..643
                     /gene="Snx22"
                     /codon_start=1
                     /product="sorting nexin-22"
                     /protein_id="NP_001100302.2"
                     /db_xref="GeneID:300796"
                     /db_xref="RGD:1305042"
                     /translation="MLEVHIPSVGPEAEGPRQSPEKGHMVFQVEVLYSGRRHTVPRRY
                     SEFHALHKRIKKRYKVPDFPSKRLPNWRTRGLEQRRQGLETYIQGVLYLNQDVPKELL
                     EFLRLRHFPTDSKASSWSTLGEFLPSDTSSQLHHRPVIGFCLDPYIHTPSPAPLPEVV
                     VDGVLQGLYGFGTSTSPAAAQPEANCHPAPSPMP"
     exon            134..217
                     /gene="Snx22"
                     /inference="alignment:Splign:2.1.0"
     exon            218..322
                     /gene="Snx22"
                     /inference="alignment:Splign:2.1.0"
     exon            323..417
                     /gene="Snx22"
                     /inference="alignment:Splign:2.1.0"
     exon            418..450
                     /gene="Snx22"
                     /inference="alignment:Splign:2.1.0"
     exon            451..518
                     /gene="Snx22"
                     /inference="alignment:Splign:2.1.0"
     exon            519..836
                     /gene="Snx22"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggagttcggg taccctagcg ctcgatccag gagaggctgc ggccgggttg gggcgcggat
       61 gctggaagtt cacatcccct cggtggggcc cgaggccgaa gggcccaggc agagtccaga
      121 gaaaggccac atggtgttcc aagtagaggt gctgtacagc ggacgcagac acacggtgcc
      181 gcggcgctac agcgagttcc atgctctaca caagcggatc aagaaacggt acaaagtgcc
      241 tgactttccc tcaaaacgcc tgcccaactg gaggaccaga ggactggaac agcgccggca
      301 gggcttggag acctacatcc agggcgtcct gtacctgaat caagatgtgc ccaaggagtt
      361 actggaattc ttgagactta gacatttccc tacagactcc aaggccagca gctggagcac
      421 cctgggggaa ttcctgccta gtgacaccag ctcacagctg caccaccggc cggtcattgg
      481 cttctgcctg gatccctaca ttcacacccc ttccccagca cctctcccgg aagtggtggt
      541 ggatggtgta ctccagggtc tctatggctt cggcaccagc accagcccgg cagcagccca
      601 gccggaggct aactgtcatc ctgctccatc accaatgccc tgacaagctc aggctttggg
      661 ccacctttca ggacagttat gtgcctcagt cctaggactc ctataggaaa ctgggtcttc
      721 ccttggacta gattcaggtg taacttgctg aggctcagtc gtgcccatcc ccactcaaag
      781 ctctgaactt ggtttgcact gacagctgta gctggtagaa ctcaagactt ttaggc
//
