LOCUS       NM_001399714            2534 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus sorting nexin family member 21 (Snx21),
            transcript variant 1, mRNA.
ACCESSION   NM_001399714 XM_008762558
VERSION     NM_001399714.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2534)
  AUTHORS   Clairfeuille,T., Norwood,S.J., Qi,X., Teasdale,R.D. and
            Collins,B.M.
  TITLE     Structure and Membrane Binding Properties of the Endosomal
            Tetratricopeptide Repeat (TPR) Domain-containing Sorting Nexins
            SNX20 and SNX21
  JOURNAL   J Biol Chem 290 (23), 14504-14517 (2015)
   PUBMED   25882846
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Jan 13, 2022 this sequence version replaced XM_008762558.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360190.971039.1,
                                           SRR26360186.2022301.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-304               JAXUCZ010000003.1  173941813-173942116
            305-462             JAXUCZ010000003.1  173942496-173942653
            463-2534            JAXUCZ010000003.1  173949500-173951571
FEATURES             Location/Qualifiers
     source          1..2534
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q42"
     gene            1..2534
                     /gene="Snx21"
                     /note="sorting nexin family member 21"
                     /db_xref="GeneID:100362940"
                     /db_xref="RGD:2323753"
     exon            1..304
                     /gene="Snx21"
                     /inference="alignment:Splign:2.1.0"
     CDS             46..1137
                     /gene="Snx21"
                     /note="isoform 1 is encoded by transcript variant 1;
                     sorting nexin 21-like"
                     /codon_start=1
                     /product="sorting nexin-21 isoform 1"
                     /protein_id="NP_001386643.1"
                     /db_xref="GeneID:100362940"
                     /db_xref="RGD:2323753"
                     /translation="MASRLLHRLRHALASDGPGEAAAGPEAEQFPESSELEDDDAEGL
                     SSRLSGTLSFTSAEDDPDEEDEDDEAGLDSPPSGDGTSGEDAERSPPPDGQRSSQLLA
                     RQLQDFWKKSRNTLVPQRLLFEVTSANVVKDPPSKYVLYTLAVMGPGPPDRQPAQISR
                     RYSDFERLHRNLQRQFRGPMSAISFPRKRLRRNFTAETIARRSRAFEQFLGHLQAVPE
                     LRQAPELQDFFVLPELRRAQSLTCTGLYREALALWANAWQLQTQLGTPSGPDRPLLTL
                     AGLAVCHQELEDPGEARACSEKALQLLGDKRPHPFLAPFLEAHVRLSWRLGLDKRQSE
                     AQLQALQEAGLTPTPPPSLKELLIKEVLD"
     exon            305..462
                     /gene="Snx21"
                     /inference="alignment:Splign:2.1.0"
     exon            463..2534
                     /gene="Snx21"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctcttcggcc ctggacccag cgtggcgcgc tcccccctgg gtgccatggc ctcgcggctc
       61 ctgcaccgac tgcgacacgc cctggccagc gatggtcccg gagaggcggc ggcgggccca
      121 gaagccgagc agttccctga gagctcggag ctggaggacg acgacgccga gggcctgtcc
      181 tcccgcctca gtggcaccct cagtttcacc agtgcagagg atgaccctga cgaagaagac
      241 gaggacgacg aggcgggtct ggactcgccg ccctctggag acgggacatc gggagaagac
      301 gcagaacgaa gtcccccacc tgatggacaa cggagcagtc aactcctggc tcgccagctg
      361 caggatttct ggaaaaagtc tcggaacacc ctagttccac agcgactgct ctttgaggtg
      421 accagcgcca atgttgtcaa ggaccctccc tccaagtacg tgctctacac cctcgccgtg
      481 atgggcccag ggccaccaga tcgccagcca gcccagatct ctcgccgata ctcagacttt
      541 gaacggctgc atagaaacct gcaaaggcaa ttccggggcc ccatgtctgc catctccttt
      601 ccccgtaagc gcctgcgccg gaactttact gcagaaacca ttgcccgtcg cagcagggcc
      661 tttgaacagt ttttgggcca cttgcaggca gtgcccgagc tacgccaagc tccagaactt
      721 caggacttct ttgtgctgcc cgagttgcgg cgggcgcaga gcctcacctg cactggcctt
      781 tatcgtgagg ctctggcact gtgggccaac gcctggcagc tgcagaccca gttgggcacc
      841 ccttctggcc cagaccgccc cctgttgact ctggctgggt tggctgtgtg ccatcaggag
      901 ctggaggatc ctggggaagc acgagcctgt agtgagaagg ctctgcagct gctgggggac
      961 aagagacccc atcctttcct ggcacccttt ctcgaggccc atgtccggct ctcctggcgc
     1021 ctgggcctag acaaacggca gtcagaggcc cagcttcagg ccctgcagga ggcaggtctt
     1081 acccctaccc caccccccag cctcaaggag ctgctcatca aagaggtgct ggactaactt
     1141 gctcccgtct taaggccatg tctaggagaa gggctgcccc aggttagggg gcaggggaga
     1201 ccctaaagta gttccagaaa gtctgcaaca gactgagagg aactttgttt tgccagacag
     1261 aattcggaac aggctttggc tggggttacc ctaggatgat accaggagga agtcttggct
     1321 tgggctcttc agcctacccc atctggagac tgtggccaag gtcaggagca atgttttctt
     1381 ttccatgggc ctctaaccca gtgagacagc ttggtgaagg gctggggact gctactggag
     1441 tcctgggatt cagaggcacg gggaggactg tagttgtatt aaaggtcagt actccagtgt
     1501 tagcaatctc tttattggat gtaagaggca ggaagcccag ctcaactgtg acctctgcca
     1561 aaggaatggc agcagaaaga gtccttagag ccccaggcga gcgagttaat ctccaactat
     1621 agtttactct cggatacccg aggcttcgat cggatcacac cctcctgggc acaggtcaca
     1681 gcaaggaccc catcccgacg ccacagccgc ccatgtacca gccctcgaga gccacctgta
     1741 agcaaggaga agggtgagaa tggcccctgc ttcagacaac ctgctgattt gatacagggc
     1801 agagctgccc ccatacaaga gcacattggg acatcatgat tccaaagtgc caagtgccct
     1861 gtgggagcct attgtagtcg ccagggggca tgctgcccac accccagcac ctcttgatgg
     1921 tttaaaagca ctttcacatt atctgctcat ttcctcaaac acagaggggc tctgacaaga
     1981 gtctgcaaag gcttggccaa gcagactgcc acatctctgg cccctcgtca gaaatcccat
     2041 tctttgcttt ctgagaagcc aagccaagtt ctcccagctg gagattcacc caaaccacca
     2101 caaggggagg ggggcacctg agaggacctg tgcccgggag gtgtggcctc ccttcccttg
     2161 gcatctggag ggtctttccc ttggtgactc tgagcctgat ctggttatct caggaggcta
     2221 acttcaggtt cccttaccca gcagagccca ctgagatcta actgtagcca cagagcgtgg
     2281 acttcactcc atgtcctgtt ttccagacaa tgacactaaa gtacaaacca gctcaggaat
     2341 tggccccagg gatcaggcca aagctgactg agtgtcctaa cttcaaggtc atgaatcttg
     2401 ggcagcaatg ttgtttgtac ttgagtaacc ctttcctgat gataaggggc tgcttaagtt
     2461 tcatctgttt ctaaaggaaa gtgtttatgc ctttgaaggg gacttcatta taaagaagcc
     2521 gggttctaac agta
//
