LOCUS       NM_001024999            1393 bp    mRNA    linear   ROD 10-DEC-2024
DEFINITION  Rattus norvegicus sorting nexin 20 (Snx20), mRNA.
ACCESSION   NM_001024999 XM_226331
VERSION     NM_001024999.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1393)
  AUTHORS   Clairfeuille,T., Norwood,S.J., Qi,X., Teasdale,R.D. and
            Collins,B.M.
  TITLE     Structure and Membrane Binding Properties of the Endosomal
            Tetratricopeptide Repeat (TPR) Domain-containing Sorting Nexins
            SNX20 and SNX21
  JOURNAL   J Biol Chem 290 (23), 14504-14517 (2015)
   PUBMED   25882846
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC091194.1.
            
            On Jun 25, 2005 this sequence version replaced XM_226331.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC091194.1, DN934205.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5756307, SAMEA5760383
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1393
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19p11"
     gene            1..1393
                     /gene="Snx20"
                     /gene_synonym="RGD1307787; Slic1"
                     /note="sorting nexin 20"
                     /db_xref="GeneID:307742"
                     /db_xref="RGD:1307787"
     exon            1..96
                     /gene="Snx20"
                     /gene_synonym="RGD1307787; Slic1"
                     /inference="alignment:Splign:2.1.0"
     exon            97..230
                     /gene="Snx20"
                     /gene_synonym="RGD1307787; Slic1"
                     /inference="alignment:Splign:2.1.0"
     CDS             110..1051
                     /gene="Snx20"
                     /gene_synonym="RGD1307787; Slic1"
                     /note="selectin ligand interactor cytoplasmic-1"
                     /codon_start=1
                     /product="sorting nexin-20"
                     /protein_id="NP_001020170.1"
                     /db_xref="GeneID:307742"
                     /db_xref="RGD:1307787"
                     /translation="MASPQHPGGPGWTGPRNQCITRTRQEVLPPGPDLPCPGPEEAQD
                     GPTSNSNMTTRELQEHWQKEKSRWKHVRLLFEIASARIEERKVSKFVMYQVVVIQTGS
                     FDSDKAVVERRYSDFERLQRALLKRFGPELEDVTFPRKRLTGNLSAETICERRLELRE
                     YLRLLYAVRAVRRSREFADFLTRPELCEAFGCLRAGQYARALDLLGRVVPLQEKLTAH
                     CPSAPVPALCAMLVCLRDLERPAEAFAVGERALRRLGARESHRYYAPLLDAMVRLAYA
                     LGKDLASLQGRLDESQLRRPTHRGATLKELTVREYLS"
     exon            231..382
                     /gene="Snx20"
                     /gene_synonym="RGD1307787; Slic1"
                     /inference="alignment:Splign:2.1.0"
     exon            383..1369
                     /gene="Snx20"
                     /gene_synonym="RGD1307787; Slic1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gacgttcgac cgtccagttg gaccttgcaa aaagagatcg aaatggagca tgtgaccctc
       61 ctggacctct gaacccacaa agcctgaaga ttccaggcac ccttggagca tggcaagtcc
      121 acagcatcct gggggccctg gctggacagg acccagaaac caatgcataa caaggaccag
      181 acaggaagtc ctgcccccag gtccagacct cccatgtcca ggcccagaag aagcccaaga
      241 tggtcccacc tccaactcca acatgaccac aagggagcta caggaacact ggcagaagga
      301 aaagagccgc tggaaacacg tcaggctcct ctttgagatc gcctcagcca gaatcgagga
      361 gaggaaagtc tccaagtttg tgatgtacca ggtcgtggtc atccagactg ggagcttcga
      421 cagcgacaag gctgtggtgg agcggcgcta ctcggacttc gagaggctgc agagggccct
      481 cctgaagcgc ttcgggccgg agctggagga cgtgacgttc ccgcggaagc gcctgaccgg
      541 gaacctgtcg gccgagacca tctgcgaacg gcgcctggag ctgcgcgagt acctgcggct
      601 gctgtacgcc gtgcgcgccg tgcgccgctc gcgcgagttc gccgacttcc ttacgcggcc
      661 cgagctgtgc gaggccttcg gctgcctgcg cgccggccag tacgcgcgcg cgctcgacct
      721 gctgggccgc gtggtgccgc tgcaggagaa gctcacggcg cactgcccga gcgctcccgt
      781 gcctgctctc tgcgccatgc tcgtgtgcct gcgcgacctg gagcggccgg ccgaggcctt
      841 cgcggtcggc gagcgcgcgc tgcgacgcct gggggcgcgc gagagccacc gctactacgc
      901 gccgctgctg gacgccatgg tgcgcctggc ctacgcgctg ggcaaggact tggcgtcgct
      961 gcagggccgg ctggatgaga gccagctccg gaggcccaca cacaggggcg ccaccctgaa
     1021 ggagctcacc gtgcgggagt atctgtcctg aggcggcccg acaggtgccc tggcatccat
     1081 gctacgtgga cagagacatg ggtcgccatt gctagtgggc tttactgggc agctttgtac
     1141 aagcccgtgt ctgctgagca gagggtttcc tgcgacccct ggaagagcca tcttgtgcct
     1201 cttgagtgcc gggttctcca aatcctaagc ccacaaggtt agctgtcaga acttttcaat
     1261 tactatggac ttgcatggga aggacttgcc taccgcacag aatcagttca aggccagcct
     1321 aggcagtttg ctgagaatgg ctccaaaata aagaggtctg aggatgtgaa aaaaaaaaaa
     1381 aaaaaaaaaa aaa
//
