LOCUS       NM_001024752            1561 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus sorting nexin 15 (Snx15), mRNA.
ACCESSION   NM_001024752 XM_215185
VERSION     NM_001024752.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1561)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1561)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   3  (bases 1 to 1561)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC097481.1.
            
            On Jun 10, 2005 this sequence version replaced XM_215185.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC097481.1, SRR8487227.115032.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1561
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q43"
     gene            1..1561
                     /gene="Snx15"
                     /note="sorting nexin 15"
                     /db_xref="GeneID:293691"
                     /db_xref="RGD:1305803"
     exon            1..187
                     /gene="Snx15"
                     /inference="alignment:Splign:2.1.0"
     CDS             86..1102
                     /gene="Snx15"
                     /codon_start=1
                     /product="sorting nexin-15"
                     /protein_id="NP_001019923.1"
                     /db_xref="GeneID:293691"
                     /db_xref="RGD:1305803"
                     /translation="MSRRAKKDDFLRHYTVSDPRTHPKGYTEYKVTAQFISKKDPEDI
                     KEVVVWKRYSDFRKLHGDLAYTHRNLFRRLEEFPAFPRAQVFGRFEASVIEERRKGAE
                     DLLRFTVPIPALNNSPQLKEFFRGGEVTRPSEVSRDLQILPPPLIPTPPSDEARLLQP
                     LPAERRGQEELEVPVDPLPSSPAQEALDLLFCCDSTEEASSSPARGPLSEAELALFDP
                     YSKEESTGPSPTHTSELAAMEVQSKRLDQEPWEPGGREEEEAEDGDPAPAYLGQATEL
                     ITQALRNEKAGAYAAALQGYQEGVHILLQGVSGDPSPTRREGVKKKAAEYLKRAETLH
                     AHLP"
     exon            188..223
                     /gene="Snx15"
                     /inference="alignment:Splign:2.1.0"
     exon            224..344
                     /gene="Snx15"
                     /inference="alignment:Splign:2.1.0"
     exon            345..460
                     /gene="Snx15"
                     /inference="alignment:Splign:2.1.0"
     exon            461..608
                     /gene="Snx15"
                     /inference="alignment:Splign:2.1.0"
     exon            609..752
                     /gene="Snx15"
                     /inference="alignment:Splign:2.1.0"
     exon            753..1010
                     /gene="Snx15"
                     /inference="alignment:Splign:2.1.0"
     exon            1011..1537
                     /gene="Snx15"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccggatcct ggcggtggca gcaggctcaa cacgcggagc gggggcgacg tgcagtagga
       61 ggagccggcg gccagctccg ctgtcatgtc gcgccgggcg aagaaggatg acttcctgcg
      121 acactacaca gtttcggacc ccaggaccca ccccaagggt tacaccgagt acaaagtaac
      181 tgctcagttc atctcaaaga aggacccgga ggacatcaaa gaggtagtag tctggaagcg
      241 atacagtgac ttccgtaagc tccacgggga cttggcctac actcaccgca acctcttccg
      301 tcgcctagag gagtttccgg ctttcccccg tgctcaggtg tttggtcggt ttgaagcttc
      361 tgtgattgag gaacggcgca agggtgcaga ggacctgctg cgcttcacgg tgcccatccc
      421 tgcactcaac aacagccctc agctcaagga gtttttccgg ggcggagagg tgactcggcc
      481 ttctgaggtg tccagggact tgcaaatcct gccgccccct ctcattccca caccaccttc
      541 tgatgaggcc cggctactcc agccactgcc tgcagaaagg agaggccagg aggagttgga
      601 ggtgccagtg gatcccctcc catccagccc tgcccaggag gccttggacc ttctcttctg
      661 ctgtgacagc actgaagaag cttccagctc cccagctcga ggtcccctct ctgaggccga
      721 acttgccctt ttcgaccctt actccaaaga ggaaagtaca ggccccagcc ctacccacac
      781 aagtgagctg gcagccatgg aggtacagtc caaaaggctg gaccaggagc cctgggagcc
      841 aggaggacgg gaggaggaag aggctgagga tggagaccct gccccggctt accttggcca
      901 ggccacagag ctcatcactc aagccctgag gaatgaaaag gctggtgcat atgctgctgc
      961 tctccaaggc taccaagaag gggtgcacat cttgcttcag ggcgtctcag gtgacccatc
     1021 ccccacccgt cgggaaggtg tgaagaagaa ggcagctgag tacctgaagc gggcagagac
     1081 ccttcacgca cacttgccct gatggggtgg acccttcctg ggacgtcagc tccagcactg
     1141 ccagcctcct ccatgcctct ccttgcttcc tgctcttgtg accctagggg ccatgtctcc
     1201 gttaactgga tcttgtgacc ctaggagcca tatctgtgtt aactgggtca agtgtgaaaa
     1261 aagcagactt ctcagctctg acctgcctgc ctccttggaa tcagacttga acttctggtc
     1321 ctgcttatct gttttatgtg agtggcatct gggccactta tctgtcagtt cacacatcta
     1381 gagccagggt ctgtagccag acctggccta ctgccttttt gtgtaaggcc ctcgatggtc
     1441 ttcttttttt tttaatggtt ggaagaaaaa agattctttg actagtgaaa aatttataaa
     1501 atttaaatac atgtgaataa aacacatctg aacacaaaaa aaaaaaaaaa aaaaaaaaaa
     1561 a
//
