LOCUS       NM_001399695            1162 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus sorting nexin 13 (Snx13), transcript variant 3,
            mRNA.
ACCESSION   NM_001399695
VERSION     NM_001399695.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1162)
  AUTHORS   Mas,C., Norwood,S.J., Bugarcic,A., Kinna,G., Leneva,N., Kovtun,O.,
            Ghai,R., Ona Yanez,L.E., Davis,J.L., Teasdale,R.D. and Collins,B.M.
  TITLE     Structural basis for different phosphoinositide specificities of
            the PX domains of sorting nexins regulating G-protein signaling
  JOURNAL   J Biol Chem 289 (41), 28554-28568 (2014)
   PUBMED   25148684
REFERENCE   2  (bases 1 to 1162)
  AUTHORS   Xie,G.X. and Palmer,P.P.
  TITLE     How regulators of G protein signaling achieve selective regulation
  JOURNAL   J Mol Biol 366 (2), 349-365 (2007)
   PUBMED   17173929
  REMARK    Review article
REFERENCE   3  (bases 1 to 1162)
  AUTHORS   Zheng,B., Ma,Y.C., Ostrom,R.S., Lavoie,C., Gill,G.N., Insel,P.A.,
            Huang,X.Y. and Farquhar,M.G.
  TITLE     RGS-PX1, a GAP for GalphaS and sorting nexin in vesicular
            trafficking
  JOURNAL   Science 294 (5548), 1939-1942 (2001)
   PUBMED   11729322
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643285.24526.1,
                                           SRR26360186.2099877.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-220               JAXUCZ010000006.1  57486684-57486903
            221-333             JAXUCZ010000006.1  57520897-57521009
            334-436             JAXUCZ010000006.1  57524797-57524899
            437-526             JAXUCZ010000006.1  57527618-57527707
            527-648             JAXUCZ010000006.1  57528659-57528780
            649-770             JAXUCZ010000006.1  57538313-57538434
            771-872             JAXUCZ010000006.1  57538519-57538620
            873-1162            JAXUCZ010000006.1  57539793-57540082
FEATURES             Location/Qualifiers
     source          1..1162
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q16"
     gene            1..1162
                     /gene="Snx13"
                     /note="sorting nexin 13"
                     /db_xref="GeneID:362731"
                     /db_xref="RGD:1309778"
     exon            1..220
                     /gene="Snx13"
                     /inference="alignment:Splign:2.1.0"
     CDS             206..994
                     /gene="Snx13"
                     /note="isoform 3 is encoded by transcript variant 3"
                     /codon_start=1
                     /product="sorting nexin-13 isoform 3"
                     /protein_id="NP_001386624.1"
                     /db_xref="GeneID:362731"
                     /db_xref="RGD:1309778"
                     /translation="MMLTEASLSIWGWGSLGIVLFLITFGPFVIFYLAFYILCFVGGG
                     LVVTLLYGKTNSEKYLEQCEHSFLPPTSPGVPKCLEEMKREARTIKIDRRLTGANIID
                     EPLQQVIQFSLRDYVQYWYYTLSDDETFLLEIRQTLQNALIQFATRSKEIDWQPYFTT
                     RMVDDFGTHLRVFRKAQQRVTEKDDQVKGTAEDLVETFFEVEVEMEKDVCRDLVCTSP
                     KDEEGFLRDLCEVLLYLLLPPGDFQSKIMRYFVRVRLNSYQIMT"
     exon            221..333
                     /gene="Snx13"
                     /inference="alignment:Splign:2.1.0"
     exon            334..436
                     /gene="Snx13"
                     /inference="alignment:Splign:2.1.0"
     exon            437..526
                     /gene="Snx13"
                     /inference="alignment:Splign:2.1.0"
     exon            527..648
                     /gene="Snx13"
                     /inference="alignment:Splign:2.1.0"
     exon            649..770
                     /gene="Snx13"
                     /inference="alignment:Splign:2.1.0"
     exon            771..872
                     /gene="Snx13"
                     /inference="alignment:Splign:2.1.0"
     exon            873..1162
                     /gene="Snx13"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcggacgtcg ctcttccaag atggcggcgc gtccgtcgcg agcagccggg ccggggggaa
       61 gccagcgaag ccgagtaaag ccgccgcccg ggacaggact gaagcagcag ttgccgccgt
      121 tggcggcggc ccgggcagtt tccgctgctg ctacggctgt tgccatgcgg cgaggctagg
      181 gaggacgtca ctcccccggg gtgtaatgat gttaacagag gccagtctat ccatatgggg
      241 atggggaagc cttggcattg tcctttttct aataaccttt ggaccctttg taatatttta
      301 tttggcattt tatatcctct gctttgtggg agggggttta gtggttactc ttctgtatgg
      361 gaaaactaac tcagaaaaat acctagagca gtgtgaacac tcatttcttc ctccaacatc
      421 acctggggtt cctaagtgct tagaagaaat gaaacgagaa gccaggacta ttaagattga
      481 tagaagattg acgggtgcca atataattga tgagcctctc cagcaagtta tccagttttc
      541 cttaagggat tatgtccagt actggtatta cactttaagt gatgatgaga catttcttct
      601 tgaaattaga caaactcttc aaaatgcact cattcagttt gctactaggt caaaagaaat
      661 agactggcaa ccttatttta ctacacgcat ggtagatgat tttggcactc acctacgagt
      721 attcagaaag gcccaacaga gagtaacaga gaaagatgat caagtaaaag gtacagcaga
      781 ggatctggta gaaacttttt ttgaagttga agttgaaatg gagaaggatg tttgccggga
      841 tctagtgtgt acttctccca aagatgaaga aggattccta agggatttgt gtgaggtttt
      901 attatattta ttgctacctc ctggagattt ccagagcaag atcatgcgat actttgtcag
      961 ggtaagacta aattcatacc aaataatgac ataaaggaag gtaaagcaat agttcccaga
     1021 atatttgatc acgagaccca attaaacttc ataattattg aagcatcaag gagcttttta
     1081 aaatgtgatt cttatctata ctatatactg tatatgctat actatatatg tattataaaa
     1141 taaaaaaaac cataatttta aa
//
