LOCUS       XM_039099899             637 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus sorting nexin 12 (Snx12), transcript
            variant X5, mRNA.
ACCESSION   XM_039099899
VERSION     XM_039099899.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039099899.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..637
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..637
                     /gene="Snx12"
                     /gene_synonym="RGD1565585"
                     /note="sorting nexin 12; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     ESTs, 8 long SRA reads, 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 17 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:363478"
                     /db_xref="RGD:1565585"
     CDS             125..622
                     /gene="Snx12"
                     /gene_synonym="RGD1565585"
                     /codon_start=1
                     /product="sorting nexin-12 isoform X5"
                     /protein_id="XP_038955827.1"
                     /db_xref="GeneID:363478"
                     /db_xref="RGD:1565585"
                     /translation="MSDTAVADTRRLNSKPQDLTDAYGPPSNFLEIDIFNPQTVGVGR
                     ARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERDSKIVVPPLPGKALKRQL
                     PFRGDEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQEEAIDRNYVPGKN
                     RVLLF"
ORIGIN      
        1 cgtgcgcgtc gtcgccggct gtgggttggc tggttatttt gcaagcggga ggggccgtgc
       61 gcgctcttgc ctcaggcctc tgtcccccac ccccttcgcc ggtaccggtc tcttcttcgg
      121 aaagatgtca gacacggcag tggctgacac tcggcgcctt aactcgaagc cccaggacct
      181 gaccgacgct tacgggccgc ctagtaactt cctggagata gacatcttta atccacagac
      241 ggtgggcgtg ggccgcgcgc gcttcaccac ctatgaggtt cgcatgcgga caaacctccc
      301 catcttcaaa ctgaaagaat cctgtgtacg gcgacgctat agtgactttg agtggctgaa
      361 aaatgagctg gagcgagata gtaagatcgt agtaccacca ctgcctggga aagccttgaa
      421 gcggcagctc cctttccgag gagatgaagg gatctttgag gaatctttca ttgaagaaag
      481 gaggcaaggc ctcgaacagt ttattaacaa aattgctggg cacccgttgg ctcagaatga
      541 acgctgtcta cacatgttcc tgcaagagga ggcaattgat aggaactacg tccctgggaa
      601 gaacagagtt ttactttttt gacaacttga ctttctt
//
