LOCUS       NM_001108817             606 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus sorting nexin 12 (Snx12), mRNA.
ACCESSION   NM_001108817 XM_001069787 XM_343799
VERSION     NM_001108817.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 606)
  AUTHORS   Zhao,Y., Wang,Y., Yang,J., Wang,X., Zhao,Y., Zhang,X. and
            Zhang,Y.W.
  TITLE     Sorting nexin 12 interacts with BACE1 and regulates BACE1-mediated
            APP processing
  JOURNAL   Mol Neurodegener 7, 30 (2012)
   PUBMED   22709416
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 606)
  AUTHORS   Pons,V., Ustunel,C., Rolland,C., Torti,E., Parton,R.G. and
            Gruenberg,J.
  TITLE     SNX12 role in endosome membrane transport
  JOURNAL   PLoS One 7 (6), e38949 (2012)
   PUBMED   22719997
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BP500254.1.
            
            On Nov 15, 2007 this sequence version replaced NM_001108817.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BP500254.1, FM085878.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16093044 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-606               BP500254.1         7-612
FEATURES             Location/Qualifiers
     source          1..606
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq22"
     gene            1..606
                     /gene="Snx12"
                     /gene_synonym="RGD1565585"
                     /note="sorting nexin 12"
                     /db_xref="GeneID:363478"
                     /db_xref="RGD:1565585"
     exon            1..231
                     /gene="Snx12"
                     /gene_synonym="RGD1565585"
                     /inference="alignment:Splign:2.1.0"
     CDS             67..579
                     /gene="Snx12"
                     /gene_synonym="RGD1565585"
                     /codon_start=1
                     /product="sorting nexin-12"
                     /protein_id="NP_001102287.2"
                     /db_xref="GeneID:363478"
                     /db_xref="RGD:1565585"
                     /translation="MSDTAVADTRRLNSKPQDLTDAYGPPSNFLEIDIFNPQTVGVGR
                     ARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERDSKIVVPPLPGKALKRQL
                     PFRGDEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQEEAIDRNYVPGKV
                     LGLHWLLSMR"
     exon            232..327
                     /gene="Snx12"
                     /gene_synonym="RGD1565585"
                     /inference="alignment:Splign:2.1.0"
     exon            328..452
                     /gene="Snx12"
                     /gene_synonym="RGD1565585"
                     /inference="alignment:Splign:2.1.0"
     exon            453..543
                     /gene="Snx12"
                     /gene_synonym="RGD1565585"
                     /inference="alignment:Splign:2.1.0"
     exon            544..606
                     /gene="Snx12"
                     /gene_synonym="RGD1565585"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcgcgctctt gcctcaggcc tctgtccccc acccccttcg ccggtaccgg tctcttcttc
       61 ggaaagatgt cagacacggc agtggctgac actcggcgcc ttaactcgaa gccccaggac
      121 ctgaccgacg cttacgggcc gcctagtaac ttcctggaga tagacatctt taatccacag
      181 acggtgggcg tgggccgcgc gcgcttcacc acctatgagg ttcgcatgcg gacaaacctc
      241 cccatcttca aactgaaaga atcctgtgta cggcgacgct atagtgactt tgagtggctg
      301 aaaaatgagc tggagcgaga tagtaagatc gtagtaccac cactgcctgg gaaagccttg
      361 aagcggcagc tccctttccg aggagatgaa gggatctttg aggaatcttt cattgaagaa
      421 aggaggcaag gcctcgaaca gtttattaac aaaattgctg ggcacccgtt ggctcagaat
      481 gaacgctgtc tacacatgtt cctgcaagag gaggcaattg ataggaacta cgtccctggg
      541 aaggtcctcg ggttacactg gctgctctcc atgaggtaaa cttgcagagt ctataattaa
      601 atagac
//
