LOCUS       XM_006247196            2713 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus sorting nexin 11 (Snx11), transcript
            variant X1, mRNA.
ACCESSION   XM_006247196
VERSION     XM_006247196.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006247196.4.
            
            On Jan 21, 2021 this sequence version replaced XM_006247196.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2713
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2713
                     /gene="Snx11"
                     /note="sorting nexin 11; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 30
                     ESTs, 7 long SRA reads, 11 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 189 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:303493"
                     /db_xref="RGD:1307319"
     CDS             378..1190
                     /gene="Snx11"
                     /codon_start=1
                     /product="sorting nexin-11 isoform X1"
                     /protein_id="XP_006247258.1"
                     /db_xref="GeneID:303493"
                     /db_xref="RGD:1307319"
                     /translation="MGFWCRMLENQELEEVITVRVQDPRLQNEGSWNSYVDYKIFLHT
                     NSKAFTAKTSCVRRRYREFVWLRKQLQRNAGLVPVPELPGKSTFFGSSDEFIEKRRQG
                     LQHFLEKVLQSVVLLSDSQLHLFLQSQLSVPEIEACVQGRGSMTVSDAILSYAMSNCG
                     WAQEERQSTSHLAKGDQLNSCCFLPRSGRRNSPSPPLSEEKDHVETWAPVIDSEGPSL
                     DSPMLPPSSSPACCDPARPDEGLSGSQPARRAVAGDPAVPLDPGQLDTVWGK"
ORIGIN      
        1 tcctggacac tcaggattgg cccgtcggga gccgcctccc gtcgtgcact ggggcgccgg
       61 cgactcaccc ggaaggagaa gccggaatct gcatctggct atatggttcg gtgctggtgg
      121 tgtcgctata gagagctgct gctgctgctc tcaggagcca gccgggatcg tttgttggca
      181 gtacatattg gctgaagtca gttttcattt caaggtttta cacataattg gggttgaggg
      241 gaaagttacc tacctggatt tccccaaggg acgtctgtga aaaacttttg ggggttttgc
      301 tctgcgagaa cccagtacgg acacgctaac tgtgcgtcct tccatgtcct ctgctcctcc
      361 ccagatgttc tcttccgatg ggcttttggt gtaggatgtt ggagaaccaa gagctggagg
      421 aggtgatcac cgtgcgagtt caggaccccc ggctgcagaa tgagggctcc tggaattctt
      481 atgtggatta taagatattc ctccatacga acagcaaggc ctttactgcc aagacctcct
      541 gtgtgcgacg gcgctaccgt gagtttgtgt ggctgaggaa gcagctacag aggaacgcgg
      601 gcttggtgcc tgtaccagaa cttcccggaa agtccacttt ctttggcagc tctgatgagt
      661 ttattgagaa gcgacgtcaa ggtctccagc atttcctgga aaaggtcctg cagagcgtgg
      721 ttctcctgtc cgacagtcag ttgcatctct tcctccaaag ccagctctca gtgcccgaga
      781 tcgaagcctg tgtccagggc cggggctcca tgacggtgtc tgacgccatt ctttcctatg
      841 ctatgtccaa ctgtggctgg gcccaggagg agaggcagag cacctctcac ctggctaaag
      901 gagaccaact taacagttgc tgctttcttc caagatcagg aaggaggaat tccccttcac
      961 cacctctcag tgaagagaag gaccacgtag aaacctgggc tccagtaatc gactctgaag
     1021 gcccatcctt agacagcccc atgctgccac ccagctcctc gccagcctgc tgtgatccgg
     1081 caagaccaga tgagggactc tctgggtccc agcctgcgag aagggctgtg gcaggggacc
     1141 ctgctgtgcc tttggatcct ggtcagctag acacagtgtg gggaaagtga gctgtggctg
     1201 ttctctctgt tctcctgggt ggtggagaag atgccgccag ggtcacattc aggtggggtt
     1261 gaggacaggg cgggtgtggg gaagtcgggt tgagcatcct ccattcaaat ctgcgcaggt
     1321 ttgtcatgca gaggttctgg ctgcctgcta cagctcctcc atgggaacaa acaccacact
     1381 ggtgtttgtg agttaggtgc agggcccaga agctgttggt tttaaataga actgtattta
     1441 ctttcccagg aggtgagttt cttcaggtgt ttgtttaaag agaactgtca caggcgaatg
     1501 gtgaatgttg gagaacccct tcgtggtaga tctttagctg ccatgttgga cattccatgt
     1561 tggacattgt cccaacagac agttcctatc gttctattcc cttcttggca ggcttccatt
     1621 tttgctgtag cccctggaga ttttggttgt gggaggctga cctcttgctt gcctccttgt
     1681 gtggacaagg tagcaaagat gtagttgccc cctccttgcc ttgtggccac aatgtgacta
     1741 tttgctgggc tttccagcat cttccaagac ctcaccaggt taagtggggc ctgagaggtg
     1801 taggcagtta aagcctatcc aggcatggct ggcacagcca gagggaaagg aacaggtcgg
     1861 aggcgttgct tgggcagtct gggctgccca tcttctgctt ataaagtaga gctggtgttt
     1921 ctgcaggatt gaagtgggct ccctttttca gatccttttc ttcctctctt aataactcca
     1981 tgaccccaga gctttgactg ccagggccta cggctgcatt ccttggaagc tgcaagttca
     2041 gtccagtggg gccacaggct ttgtttcggc cgggaagtga gggctgggga tggaggtaag
     2101 gagacctaag ctgtcctgca gacagtgcgg ctcctgtctc ctgctgctga atgggctctg
     2161 cagagagcag gggctgctag ctggagtgct agggcgggct gagtgccggg ctcaccttgc
     2221 cactgctctg ctcttaggtt tgtgtgtgtg tctcactctg gccatccact ccagctgtgc
     2281 ggtccacctc agctgtggca ctactggcct gcattgtggg actggcctgg catttagttc
     2341 agagtcgagg ggctttggcc tgaaataaaa tgcaagtatt taagactgtt gttgcaattt
     2401 gtgtctaaca agctgtagca gggaaggagg gagtgagagc tggcaggagt tactttcata
     2461 aatcatgaat ttatcagcgt ggaaataaca ctgtagacct gtgcactgga actctcctgc
     2521 attatgtgtg tgactcaagt tcaccactgc aggagagacg gttttccaga gagctaggat
     2581 gcagctcttc tcacagatct gggcatgaac cttgttaggt ataatttacc tgatgctgcc
     2641 tccatcttgg aagcctgtct gaggtgccag gtgctaaaag agaaataaag tttgtcaaca
     2701 ggcagatgca aaa
//
