LOCUS       NM_001012012            2520 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus sorting nexin 11 (Snx11), transcript variant 1,
            mRNA.
ACCESSION   NM_001012012 XM_220899
VERSION     NM_001012012.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2520)
  AUTHORS   Xu J, Xu T, Wu B, Ye Y, You X, Shu X, Pei D and Liu J.
  TITLE     Structure of sorting nexin 11 (SNX11) reveals a novel extended phox
            homology (PX) domain critical for inhibition of SNX10-induced
            vacuolation
  JOURNAL   J Biol Chem 288 (23), 16598-16605 (2013)
   PUBMED   23615901
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC086543.1, DN932564.1 and CO558022.1.
            
            On Nov 24, 2010 this sequence version replaced NM_001012012.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript. Variants 1 and 2 encode the same protein.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00132261, SAMD00132262
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-392               BC086543.1         1-392
            393-770             DN932564.1         328-705
            771-1305            CO558022.1         110-644
            1306-2520           BC086543.1         1304-2518
FEATURES             Location/Qualifiers
     source          1..2520
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q31"
     gene            1..2520
                     /gene="Snx11"
                     /note="sorting nexin 11"
                     /db_xref="GeneID:303493"
                     /db_xref="RGD:1307319"
     exon            1..91
                     /gene="Snx11"
                     /inference="alignment:Splign:2.1.0"
     exon            92..151
                     /gene="Snx11"
                     /inference="alignment:Splign:2.1.0"
     exon            152..206
                     /gene="Snx11"
                     /inference="alignment:Splign:2.1.0"
     CDS             165..977
                     /gene="Snx11"
                     /codon_start=1
                     /product="sorting nexin-11"
                     /protein_id="NP_001012012.2"
                     /db_xref="GeneID:303493"
                     /db_xref="RGD:1307319"
                     /translation="MGFWCRMLENQELEEVITVRVQDPRLQNEGSWNSYVDYKIFLHT
                     NSKAFTAKTSCVRRRYREFVWLRKQLQRNAGLVPVPELPGKSTFFGSSDEFIEKRRQG
                     LQHFLEKVLQSVVLLSDSQLHLFLQSQLSVPEIEACVQGRGSMTVSDAILSYAMSNCG
                     WAQEERQSTSHLAKGDQLNSCCFLPRSGRRNSPSPPLSEEKDHVETWAPVIDSEGPSL
                     DSPMLPPSSSPACCDPARPDEGLSGSQPARRAVAGDPAVPLDPGQLDTVWGK"
     exon            207..293
                     /gene="Snx11"
                     /inference="alignment:Splign:2.1.0"
     exon            294..394
                     /gene="Snx11"
                     /inference="alignment:Splign:2.1.0"
     exon            395..490
                     /gene="Snx11"
                     /inference="alignment:Splign:2.1.0"
     exon            491..703
                     /gene="Snx11"
                     /inference="alignment:Splign:2.1.0"
     exon            704..2500
                     /gene="Snx11"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctcacccgga aggagaagcc ggaatctgca tctggctata tggttcggtg ctggtggtgt
       61 cgctatagag agctgctgct gctgctctca ggagccagcc gggatcgttt gttggcagta
      121 catattggct gaagtcagtt ttcatttcaa gatgttctct tccgatgggc ttttggtgta
      181 ggatgttgga gaaccaagag ctggaggagg tgatcaccgt gcgagttcag gacccccggc
      241 tgcagaatga gggctcctgg aattcttatg tggattataa gatattcctc catacgaaca
      301 gcaaggcctt tactgccaag acctcctgtg tgcgacggcg ctaccgtgag tttgtgtggc
      361 tgaggaagca gctacagagg aacgcgggct tggtgcctgt accagaactt cccggaaagt
      421 ccactttctt tggcagctct gatgagttta ttgagaagcg acgtcaaggt ctccagcatt
      481 tcctggaaaa ggtcctgcag agcgtggttc tcctgtccga cagtcagttg catctcttcc
      541 tccaaagcca gctctcagtg cccgagatcg aagcctgtgt ccagggccgg ggctccatga
      601 cggtgtctga cgccattctt tcctatgcta tgtccaactg tggctgggcc caggaggaga
      661 ggcagagcac ctctcacctg gctaaaggag accaacttaa cagttgctgc tttcttccaa
      721 gatcaggaag gaggaattcc ccttcaccac ctctcagtga agagaaggac cacgtagaaa
      781 cctgggctcc agtaatcgac tctgaaggcc catccttaga cagccccatg ctgccaccca
      841 gctcctcgcc agcctgctgt gatccggcaa gaccagatga gggactctct gggtcccagc
      901 ctgcgagaag ggctgtggca ggggaccctg ctgtgccttt ggatcctggt cagctagaca
      961 cagtgtgggg aaagtgagct gtggctgttc tctctgttct cctgggtggt ggagaagatg
     1021 ccgccagggt cacattcagg tggggttgag gacagggcgg gtgtggggaa gtcgggttga
     1081 gcatcctcca ttcaaatctg cgcaggtttg tcatgcagag gttctggctg cctgctacag
     1141 ctcctccatg ggaacaaaca ccacactggt gtttgtgagt taggtgcagg gcccagaagc
     1201 tgttggtttt aaatagaact gtatttactt tcccaggagg tgagtttctt caggtgtttg
     1261 tttaaagaga actgtcacag gcgaatggtg aatgttggag aaccccttcg tggtagatct
     1321 ttagctgcca tgttggacat tccatgttgg acattgtccc aacagacagt tcctatcgtt
     1381 ctattccctt cttggcaggc ttccattttt gctgtagccc ctggagattt tggttgtggg
     1441 aggctgacct cttgcttgcc tccttgtgtg gacaaggtag caaagatgta gttgccccct
     1501 ccttgccttg tggccacaat gtgactattt gctgggcttt ccagcatctt ccaagacctc
     1561 accaggttaa gtggggcctg agaggtgtag gcagttaaag cctatccagg catggctggc
     1621 acagccagag ggaaaggaac aggtcggagg cgttgcttgg gcagtctggg ctgcccatct
     1681 tctgcttata aagtagagct ggtgtttctg caggattgaa gtgggctccc tttttcagat
     1741 ccttttcttc ctctcttaat aactccatga ccccagagct ttgactgcca gggcctacgg
     1801 ctgcattcct tggaagctgc aagttcagtc cagtggggcc acaggctttg tttcggccgg
     1861 gaagtgaggg ctggggatgg aggtaaggag acctaagctg tcctgcagac agtgcggctc
     1921 ctgtctcctg ctgctgaatg ggctctgcag agagcagggg ctgctagctg gagtgctagg
     1981 gcgggctgag tgccgggctc accttgccac tgctctgctc ttaggtttgt gtgtgtgtct
     2041 cactctggcc atccactcca gctgtgcggt ccacctcagc tgtggcacta ctggcctgca
     2101 ttgtgggact ggcctggcat ttagttcaga gtcgaggggc tttggcctga aataaaatgc
     2161 aagtatttaa gactgttgtt gcaatttgtg tctaacaagc tgtagcaggg aaggagggag
     2221 tgagagctgg caggagttac tttcataaat catgaattta tcagcgtgga aataacactg
     2281 tagacctgtg cactggaact ctcctgcatt atgtgtgtga ctcaagttca ccactgcagg
     2341 agagacggtt ttccagagag ctaggatgca gctcttctca cagatctggg catgaacctt
     2401 gttaggtata atttacctga tgctgcctcc atcttggaag cctgtctgag gtgccaggtg
     2461 ctaaaagaga aataaagttt gtcaacaggc agatgcaaaa aaaaaaaaaa aaaaaaaaaa
//
