LOCUS       NM_001109279            2274 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus SNW domain containing 1 (Snw1), mRNA.
ACCESSION   NM_001109279 XM_001059272 XM_576077
VERSION     NM_001109279.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2274)
  AUTHORS   Bertram,K., Agafonov,D.E., Liu,W.T., Dybkov,O., Will,C.L.,
            Hartmuth,K., Urlaub,H., Kastner,B., Stark,H. and Luhrmann,R.
  TITLE     Cryo-EM structure of a human spliceosome activated for step 2 of
            splicing
  JOURNAL   Nature 542 (7641), 318-323 (2017)
   PUBMED   28076346
REFERENCE   2  (bases 1 to 2274)
  AUTHORS   Wu,Y., Xu,F., Huang,H., Chen,L., Wen,M., Jiang,L., Lu,L., Li,L.,
            Song,D., Zeng,S., Li,L. and Li,M.
  TITLE     Up-regulation of SKIP relates to retinal ganglion cells apoptosis
            after optic nerve crush in vivo
  JOURNAL   J Mol Histol 45 (6), 715-721 (2014)
   PUBMED   25074585
REFERENCE   3  (bases 1 to 2274)
  AUTHORS   Liu,X., Ni,Q., Xu,J., Sheng,C., Wang,Q., Chen,J., Yang,S. and
            Wang,H.
  TITLE     Expression and prognostic role of SKIP in human breast carcinoma
  JOURNAL   J Mol Histol 45 (2), 169-180 (2014)
   PUBMED   24150787
REFERENCE   4  (bases 1 to 2274)
  AUTHORS   Chanarat,S. and Strasser,K.
  TITLE     Splicing and beyond: the many faces of the Prp19 complex
  JOURNAL   Biochim Biophys Acta 1833 (10), 2126-2134 (2013)
   PUBMED   23742842
  REMARK    Review article
REFERENCE   5  (bases 1 to 2274)
  AUTHORS   Liu,G., Huang,X., Cui,X., Zhang,J., Wei,L., Ni,R. and Lu,C.
  TITLE     High SKIP expression is correlated with poor prognosis and cell
            proliferation of hepatocellular carcinoma
  JOURNAL   Med Oncol 30 (3), 537 (2013)
   PUBMED   23696020
REFERENCE   6  (bases 1 to 2274)
  AUTHORS   Zhang,C., Baudino,T.A., Dowd,D.R., Tokumaru,H., Wang,W. and
            MacDonald,P.N.
  TITLE     Ternary complexes and cooperative interplay between
            NCoA-62/Ski-interacting protein and steroid receptor coactivators
            in vitamin D receptor-mediated transcription
  JOURNAL   J Biol Chem 276 (44), 40614-40620 (2001)
   PUBMED   11514567
REFERENCE   7  (bases 1 to 2274)
  AUTHORS   Leong,G.M., Subramaniam,N., Figueroa,J., Flanagan,J.L.,
            Hayman,M.J., Eisman,J.A. and Kouzmenko,A.P.
  TITLE     Ski-interacting protein interacts with Smad proteins to augment
            transforming growth factor-beta-dependent transcription
  JOURNAL   J Biol Chem 276 (21), 18243-18248 (2001)
   PUBMED   11278756
REFERENCE   8  (bases 1 to 2274)
  AUTHORS   Zhou,S., Fujimuro,M., Hsieh,J.J., Chen,L., Miyamoto,A.,
            Weinmaster,G. and Hayward,S.D.
  TITLE     SKIP, a CBF1-associated protein, interacts with the ankyrin repeat
            domain of NotchIC To facilitate NotchIC function
  JOURNAL   Mol Cell Biol 20 (7), 2400-2410 (2000)
   PUBMED   10713164
REFERENCE   9  (bases 1 to 2274)
  AUTHORS   Baudino,T.A., Kraichely,D.M., Jefcoat,S.C. Jr., Winchester,S.K.,
            Partridge,N.C. and MacDonald,P.N.
  TITLE     Isolation and characterization of a novel coactivator protein,
            NCoA-62, involved in vitamin D-mediated transcription
  JOURNAL   J Biol Chem 273 (26), 16434-16441 (1998)
   PUBMED   9632709
REFERENCE   10 (bases 1 to 2274)
  AUTHORS   Dahl,R., Wani,B. and Hayman,M.J.
  TITLE     The Ski oncoprotein interacts with Skip, the human homolog of
            Drosophila Bx42
  JOURNAL   Oncogene 16 (12), 1579-1586 (1998)
   PUBMED   9569025
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001109279.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.2454985.1,
                                           SRR26360194.1668192.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-72                JAXUCZ010000006.1  112850388-112850459 c
            73-226              JAXUCZ010000006.1  112847075-112847228 c
            227-388             JAXUCZ010000006.1  112843453-112843614 c
            389-484             JAXUCZ010000006.1  112839705-112839800 c
            485-591             JAXUCZ010000006.1  112839508-112839614 c
            592-696             JAXUCZ010000006.1  112838396-112838500 c
            697-766             JAXUCZ010000006.1  112837606-112837675 c
            767-832             JAXUCZ010000006.1  112837071-112837136 c
            833-949             JAXUCZ010000006.1  112833536-112833652 c
            950-1091            JAXUCZ010000006.1  112832285-112832426 c
            1092-1188           JAXUCZ010000006.1  112830637-112830733 c
            1189-1306           JAXUCZ010000006.1  112829115-112829232 c
            1307-1470           JAXUCZ010000006.1  112827262-112827425 c
            1471-2274           JAXUCZ010000006.1  112826374-112827177 c
FEATURES             Location/Qualifiers
     source          1..2274
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q31"
     gene            1..2274
                     /gene="Snw1"
                     /gene_synonym="RGD1561926"
                     /note="SNW domain containing 1"
                     /db_xref="GeneID:500695"
                     /db_xref="RGD:1561926"
     exon            1..72
                     /gene="Snw1"
                     /gene_synonym="RGD1561926"
                     /inference="alignment:Splign:2.1.0"
     CDS             59..1669
                     /gene="Snw1"
                     /gene_synonym="RGD1561926"
                     /codon_start=1
                     /product="SNW domain-containing protein 1"
                     /protein_id="NP_001102749.1"
                     /db_xref="GeneID:500695"
                     /db_xref="RGD:1561926"
                     /translation="MALTSFLPAPTQLSQDQLEAEERARSQRSRQTSLVSSRREPPPY
                     GYRKGWIPRLLEDFGDGGAFPEIHVAQYPLDMGRKKKMSNALAIQVDPEGKIKYDAIA
                     RQGQSKDKVIYSKYTDLVPKEVMNADDPDLQRPDEEAIKEITEKTRVALEKSVSQKVA
                     AAMPVRAADKLAPAQYIRYTPSQQGVAFNSGAKQRVIRMVEMQKDPMEPPRFKINKKI
                     PRGPPSPPAPVMHSPSRKMTVKEQQEWKIPPCISNWKNAKGYTIPLDKRLAADGRGLQ
                     TVHINENFAKLAEALYIADRKAREAVEMRAQVERKMAQKEKEKHEEKLREMAQKARER
                     RAGIKTHVEKEDGEARERDEIRHDRRKERQHDRNLSRAAPDKRSKLQRNENRDISEVI
                     ALGVPNPRTSNEVQYDQRLFNQSKGMDSGFAGGEDEIYNVYDQAWRGGKDMAQSIYRP
                     SKNLDKDMYGDDLETRIKTNRFVPDKEFSGSDGRKRGREGPVQFEEDPFGLDKFLEEA
                     KQHGGSKRPSDSSRPKEHEHEGKKRRKE"
     exon            73..226
                     /gene="Snw1"
                     /gene_synonym="RGD1561926"
                     /inference="alignment:Splign:2.1.0"
     exon            227..388
                     /gene="Snw1"
                     /gene_synonym="RGD1561926"
                     /inference="alignment:Splign:2.1.0"
     exon            389..484
                     /gene="Snw1"
                     /gene_synonym="RGD1561926"
                     /inference="alignment:Splign:2.1.0"
     exon            485..591
                     /gene="Snw1"
                     /gene_synonym="RGD1561926"
                     /inference="alignment:Splign:2.1.0"
     exon            592..696
                     /gene="Snw1"
                     /gene_synonym="RGD1561926"
                     /inference="alignment:Splign:2.1.0"
     exon            697..766
                     /gene="Snw1"
                     /gene_synonym="RGD1561926"
                     /inference="alignment:Splign:2.1.0"
     exon            767..832
                     /gene="Snw1"
                     /gene_synonym="RGD1561926"
                     /inference="alignment:Splign:2.1.0"
     exon            833..949
                     /gene="Snw1"
                     /gene_synonym="RGD1561926"
                     /inference="alignment:Splign:2.1.0"
     exon            950..1091
                     /gene="Snw1"
                     /gene_synonym="RGD1561926"
                     /inference="alignment:Splign:2.1.0"
     exon            1092..1188
                     /gene="Snw1"
                     /gene_synonym="RGD1561926"
                     /inference="alignment:Splign:2.1.0"
     exon            1189..1306
                     /gene="Snw1"
                     /gene_synonym="RGD1561926"
                     /inference="alignment:Splign:2.1.0"
     exon            1307..1470
                     /gene="Snw1"
                     /gene_synonym="RGD1561926"
                     /inference="alignment:Splign:2.1.0"
     exon            1471..2274
                     /gene="Snw1"
                     /gene_synonym="RGD1561926"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ttcccgggca agaatagccc cgcgacgctg tggcctgcgc aggaagaagc ggaagaagat
       61 ggcgctcacc agctttttac ctgcgcctac ccagctatct caggaccaac ttgaagctga
      121 agaaagggca agatctcaga gatcacgaca gacctccctg gtctcctctc gaagggagcc
      181 tcccccatac ggatacagga aaggctggat tccaagactc ttagaggatt ttggagatgg
      241 aggcgctttc ccagaaatcc atgtggccca gtatcctctg gatatggggc gaaagaaaaa
      301 aatgtcgaat gcactggcca ttcaggtgga tcctgaaggg aaaattaaat atgatgcaat
      361 tgctcgacag ggacagtcca aagacaaggt catttacagc aaatacacgg acctggttcc
      421 aaaggaggtt atgaatgcag atgacccaga cctgcagagg cccgatgagg aagcaattaa
      481 agagataaca gaaaagacaa gagttgcctt ggagaagtct gtgtctcaga aggttgctgc
      541 ggccatgcca gttcgtgcag ctgacaagct ggctcctgct cagtatatcc gttacacacc
      601 atctcagcaa ggagtagcat tcaattctgg agctaaacag agggttattc ggatggtaga
      661 aatgcagaaa gatccaatgg agcctccaag atttaagatt aataagaaaa ttccccgggg
      721 accaccatct cctcctgcac ctgtaatgca ctctcctagt cggaagatga ctgtaaagga
      781 gcagcaggag tggaagatcc ctccttgtat ttccaactgg aagaacgcta aggggtatac
      841 gattccacta gataaacggc tggctgctga tggaagagga cttcagactg tccacatcaa
      901 tgaaaatttt gccaaactgg ctgaagccct atacattgca gatcggaagg ctcgagaagc
      961 ggtggaaatg cgagcccaag tggagagaaa gatggctcag aaagaaaagg agaagcatga
     1021 ggagaaactc agagaaatgg cccagaaagc cagagaaagg agagctggga tcaaaaccca
     1081 tgtggaaaaa gaggatggag aggcccgaga aagagatgaa atccgtcatg acaggcgaaa
     1141 agagaggcag catgaccgga acctttccag agcagctcct gataagaggt ccaaactaca
     1201 gagaaatgaa aatcgagata tcagtgaagt cattgctctt ggtgtgccca atcctcgaac
     1261 ttccaatgaa gtccagtatg accaaaggct cttcaaccag tccaagggta tggacagtgg
     1321 atttgcaggt ggagaagatg aaatttacaa tgtttatgat caagcctgga gaggtggcaa
     1381 agatatggct cagagtatct ataggccgag taaaaatctg gacaaggaca tgtatggcga
     1441 tgacctcgaa accaggataa agaccaacag atttgttcct gataaagagt tttcaggttc
     1501 agatggtaga aagagaggcc gagaaggacc agttcagttt gaggaagatc cttttggttt
     1561 ggacaaattt ttggaagaag caaaacagca tggtgggtct aaaagacctt cagatagcag
     1621 tcgccccaag gaacatgaac atgaaggcaa gaagcgaagg aaggagtaga tgggcctctt
     1681 gaaattaaat ctgacgtata cagcagagga ctgcctggtc tggccagagt gagagaaaat
     1741 ggacctaacc ctcaagagac ttgagaccac aaagaatggg gaagcctggg gggtgggggg
     1801 tggggtgggg catcctcttg gagacagggg aagaggaatt tttggagaga tgatggggag
     1861 ggggataaca actggactgt atttaaaaaa aaaattaaaa aaaaaaacaa accaaatctg
     1921 ggtgatagat cccaacactc cttccatcca ggagatagag gcaatgcata ttctatttcg
     1981 cagtagtttt tataaagaat ggtctgtgtt tgtgcctctc caatcttgca gcacttataa
     2041 aaaatactgc ccctgacaaa attgaggcta cttccttgct aatccagggg taaaattttc
     2101 tgtaagaact ttatgaatta ccccaaatgg ttagtaggtg gatgctcata cactcgaact
     2161 gtgctggcag atgcatttgc cctgttggac tcttctactg tgcagtgggg aaaccaagtt
     2221 cttgcttagt gcaaactagt ttcaaaaaaa aaaaaaaaaa cacatttaga aaaa
//
