LOCUS       NM_130738               1357 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus SNRPN upstream open reading frame (Snurf),
            transcript variant 2, mRNA.
ACCESSION   NM_130738
VERSION     NM_130738.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1357)
  AUTHORS   Curtin,D., Ferris,H.A., Hakli,M., Gibson,M., Janne,O.A.,
            Palvimo,J.J. and Shupnik,M.A.
  TITLE     Small nuclear RING finger protein stimulates the rat luteinizing
            hormone-beta promoter by interacting with Sp1 and steroidogenic
            factor-1 and protects from androgen suppression
  JOURNAL   Mol Endocrinol 18 (5), 1263-1276 (2004)
   PUBMED   14988433
REFERENCE   2  (bases 1 to 1357)
  AUTHORS   Rouleau,N., Domans'kyi,A., Reeben,M., Moilanen,A.M., Havas,K.,
            Kang,Z., Owen-Hughes,T., Palvimo,J.J. and Janne,O.A.
  TITLE     Novel ATPase of SNF2-like protein family interacts with androgen
            receptor and modulates androgen-dependent transcription
  JOURNAL   Mol Biol Cell 13 (6), 2106-2119 (2002)
   PUBMED   12058073
REFERENCE   3  (bases 1 to 1357)
  AUTHORS   Gray,T.A., Saitoh,S. and Nicholls,R.D.
  TITLE     An imprinted, mammalian bicistronic transcript encodes two
            independent proteins
  JOURNAL   Proc Natl Acad Sci U S A 96 (10), 5616-5621 (1999)
   PUBMED   10318933
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1 and BC081739.1.
            
            On Jul 27, 2012 this sequence version replaced NM_130738.1.
            
            Transcript Variant: This variant (2) differs in the 3' UTR compared
            to variant 1. Both variants encode the same protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC081739.1, FQ213165.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840110, SAMN12840115
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            bicistronic transcript :: PMID: 10318933
            NMD candidate          :: translation inferred from conservation
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-47                JAXUCZ010000001.1  120339107-120339153 c
            48-1357             BC081739.1         1-1310
FEATURES             Location/Qualifiers
     source          1..1357
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q22"
     gene            1..1357
                     /gene="Snurf"
                     /note="SNRPN upstream open reading frame"
                     /db_xref="GeneID:113938"
                     /db_xref="RGD:69269"
     exon            1..99
                     /gene="Snurf"
                     /inference="alignment:Splign:2.1.0"
     CDS             86..301
                     /gene="Snurf"
                     /codon_start=1
                     /product="SNRPN upstream reading frame protein"
                     /protein_id="NP_570094.1"
                     /db_xref="GeneID:113938"
                     /db_xref="RGD:69269"
                     /translation="MERGRDRLHLRRTTEQHVPEIEVQVKRRRTASLSNQECHLYPRR
                     SQQQQIPVVDFQAELRQAFLAETPRGG"
     exon            100..195
                     /gene="Snurf"
                     /inference="alignment:Splign:2.1.0"
     exon            196..344
                     /gene="Snurf"
                     /inference="alignment:Splign:2.1.0"
     exon            345..488
                     /gene="Snurf"
                     /inference="alignment:Splign:2.1.0"
     exon            489..640
                     /gene="Snurf"
                     /inference="alignment:Splign:2.1.0"
     exon            641..752
                     /gene="Snurf"
                     /inference="alignment:Splign:2.1.0"
     exon            753..905
                     /gene="Snurf"
                     /inference="alignment:Splign:2.1.0"
     exon            906..1044
                     /gene="Snurf"
                     /inference="alignment:Splign:2.1.0"
     exon            1045..1170
                     /gene="Snurf"
                     /inference="alignment:Splign:2.1.0"
     exon            1171..1334
                     /gene="Snurf"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagccattgc ggcaagtcta gcgcagagag tagagggtgc tggagatgcc agacggttgg
       61 ttctgaggag agattttgca acgcaatgga gcgaggaagg gatcgtttac acttgagaag
      121 aactactgaa cagcacgtgc cagagattga ggtccaggtc aaacgtagaa ggacagcctc
      181 actgagcaac caagagtgtc acttgtaccc aaggcgttct cagcaacagc aaattcctgt
      241 ggtggatttc caggcagaac tgagacaggc gttcttagct gagacaccaa gaggtggtta
      301 aagcagtatt ggaacttcaa ggtggtggaa gtcaacaaaa acaggaccta tccactgatt
      361 gtgaaacttt ggtcaagctt acactgtgtt aatagcctgc atcaaacctt tatttattgc
      421 ccttctccaa gtattaagga tcttgaaatt ttagtgttga caactgctat tgtggaacag
      481 caatcatgac tgtgggtaag agtagcaaga tgctccagca tattgactat agaatgagat
      541 gtatcctgca agatggaaga atcttcattg gcacctttaa ggcttttgac aagcatatga
      601 atttgatcct ctgtgattgt gatgagttca ggaagatcaa gccaaagaat gcaaaacagc
      661 cagaacgtga agaaaaacgg gttttgggtc tggtcttgct acgtggagag aacttggttt
      721 ccatgacagt ggagggtcca cctcctaaag atactggcat tgctcgtgtg ccacttgctg
      781 gtgctgcagg tggccctggt gttggaagag cagctggcag aggagtacca gcaggtgtac
      841 ctattcccca agctcctgct ggattagcag gccctgtccg aggagttgga ggcccatccc
      901 agcaggtcat gaccccacag ggaagaggca ctgttgcagc tgctgctgtt gctgctactg
      961 ctagcattgc aggagcccca acccagtacc cgccaggacg gggaactcca cctccacctg
     1021 taggcagagc aaccccacct ccaggcatta tggctcctcc acctggaatg agaccaccca
     1081 tgggcccacc aattggactt ccccctgctc gagggacacc tataggcatg ccccctccag
     1141 gaatgagacc ccctcctcca ggaattagag gcccacctcc cccaggaatg cgtccaccaa
     1201 gaccctaaga tacagttgat aaatctcagc ccttctcttt ccctacaatg cttcttgtga
     1261 aattgtgtcg cctgcaagct tttgacccct cttactgcat taactataga taataaatac
     1321 atagcgcaat tgaaaaaaaa aaaaaaaaaa aaaaaaa
//
