LOCUS       NM_212515               1228 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus small nuclear ribonucleoprotein 13 (Snu13), mRNA.
ACCESSION   NM_212515 XM_216997
VERSION     NM_212515.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1228)
  AUTHORS   Bertram,K., Agafonov,D.E., Dybkov,O., Haselbach,D., Leelaram,M.N.,
            Will,C.L., Urlaub,H., Kastner,B., Luhrmann,R. and Stark,H.
  TITLE     Cryo-EM Structure of a Pre-catalytic Human Spliceosome Primed for
            Activation
  JOURNAL   Cell 170 (4), 701-713 (2017)
   PUBMED   28781166
REFERENCE   2  (bases 1 to 1228)
  AUTHORS   Agafonov,D.E., Kastner,B., Dybkov,O., Hofele,R.V., Liu,W.T.,
            Urlaub,H., Luhrmann,R. and Stark,H.
  TITLE     Molecular architecture of the human U4/U6.U5 tri-snRNP
  JOURNAL   Science 351 (6280), 1416-1420 (2016)
   PUBMED   26912367
REFERENCE   3  (bases 1 to 1228)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   4  (bases 1 to 1228)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   5  (bases 1 to 1228)
  AUTHORS   Watkins,N.J. and Bohnsack,M.T.
  TITLE     The box C/D and H/ACA snoRNPs: key players in the modification,
            processing and the dynamic folding of ribosomal RNA
  JOURNAL   Wiley Interdiscip Rev RNA 3 (3), 397-414 (2012)
   PUBMED   22065625
  REMARK    Review article
REFERENCE   6  (bases 1 to 1228)
  AUTHORS   Kuhn,J.F., Tran,E.J. and Maxwell,E.S.
  TITLE     Archaeal ribosomal protein L7 is a functional homolog of the
            eukaryotic 15.5kD/Snu13p snoRNP core protein
  JOURNAL   Nucleic Acids Res 30 (4), 931-941 (2002)
   PUBMED   11842104
REFERENCE   7  (bases 1 to 1228)
  AUTHORS   Watkins,N.J., Segault,V., Charpentier,B., Nottrott,S., Fabrizio,P.,
            Bachi,A., Wilm,M., Rosbash,M., Branlant,C. and Luhrmann,R.
  TITLE     A common core RNP structure shared between the small nucleoar box
            C/D RNPs and the spliceosomal U4 snRNP
  JOURNAL   Cell 103 (3), 457-466 (2000)
   PUBMED   11081632
REFERENCE   8  (bases 1 to 1228)
  AUTHORS   Chang,M.S., Sasaki,H., Campbell,M.S., Kraeft,S.K., Sutherland,R.,
            Yang,C.Y., Liu,Y., Auclair,D., Hao,L., Sonoda,H., Ferland,L.H. and
            Chen,L.B.
  TITLE     HRad17 colocalizes with NHP2L1 in the nucleolus and redistributes
            after UV irradiation
  JOURNAL   J Biol Chem 274 (51), 36544-36549 (1999)
   PUBMED   10593953
REFERENCE   9  (bases 1 to 1228)
  AUTHORS   Zhu,X. and Naz,R.K.
  TITLE     Fertilization antigen-1: cDNA cloning, testis-specific expression,
            and immunocontraceptive effects
  JOURNAL   Proc Natl Acad Sci U S A 94 (9), 4704-4709 (1997)
   PUBMED   9114055
REFERENCE   10 (bases 1 to 1228)
  AUTHORS   Lee,N.H., Weinstock,K.G., Kirkness,E.F., Earle-Hughes,J.A.,
            Fuldner,R.A., Marmaros,S., Glodek,A., Gocayne,J.D., Adams,M.D.,
            Kerlavage,A.R. et al.
  TITLE     Comparative expressed-sequence-tag analysis of differential gene
            expression profiles in PC-12 cells before and after nerve growth
            factor treatment
  JOURNAL   Proc Natl Acad Sci U S A 92 (18), 8303-8307 (1995)
   PUBMED   7667285
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Mar 18, 2021 this sequence version replaced NM_212515.2.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ233358.1, FQ220734.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760400, SAMN09345238
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-130               JAXUCZ010000007.1  115450879-115451008 c
            131-251             JAXUCZ010000007.1  115447725-115447845 c
            252-1228            JAXUCZ010000007.1  115445415-115446391 c
FEATURES             Location/Qualifiers
     source          1..1228
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q34"
     gene            1..1228
                     /gene="Snu13"
                     /gene_synonym="Nhp2l1; Otk27"
                     /note="small nuclear ribonucleoprotein 13"
                     /db_xref="GeneID:300092"
                     /db_xref="RGD:1303103"
     exon            1..130
                     /gene="Snu13"
                     /gene_synonym="Nhp2l1; Otk27"
                     /inference="alignment:Splign:2.1.0"
     CDS             128..514
                     /gene="Snu13"
                     /gene_synonym="Nhp2l1; Otk27"
                     /note="high mobility group-like nuclear protein 2 homolog
                     1; U4/U6.U5] tri-snRNP 15.5 kDa protein; U4/U6.U5
                     tri-snRNP 15.5 kDa protein; U4/U6.U5 small nuclear
                     ribonucleoprotein SNU13; SNU13 homolog, small nuclear
                     ribonucleoprotein (U4/U6.U5)"
                     /codon_start=1
                     /product="NHP2-like protein 1"
                     /protein_id="NP_997680.1"
                     /db_xref="GeneID:300092"
                     /db_xref="RGD:1303103"
                     /translation="MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATK
                     TLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIAC
                     SVTIKEGSQLKQQIQSIQQSIERLLV"
     exon            131..251
                     /gene="Snu13"
                     /gene_synonym="Nhp2l1; Otk27"
                     /inference="alignment:Splign:2.1.0"
     exon            252..1228
                     /gene="Snu13"
                     /gene_synonym="Nhp2l1; Otk27"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gctctacgtg acgtcacttc cgctcccgcc actcctggag tggtttccgc tgctttttct
       61 gcgcgacgtt tctgtctgtc tgaggtgggc tgttgtgaag tctcggtgag gcctgcgcac
      121 cgcagccatg acggaggctg atgtgaaccc aaaggcctat cccctcgcag atgcccacct
      181 caccaagaag ctgctggacc ttgttcagca gtcgtgtaac tacaagcagc ttcggaaagg
      241 agccaatgaa gccaccaaaa ccctcaacag aggcatctct gagttcattg tgatggcagc
      301 agacgctgag cccttggaga tcatcctgca cctccctctg ctgtgtgaag acaagaatgt
      361 cccctatgta tttgtacgct ccaagcaggc tttaggacgg gcctgtggag tctccaggcc
      421 ggtcatcgcc tgttctgtaa ccatcaaaga aggctctcaa ctaaagcagc agatccaatc
      481 cattcagcag tctattgagc ggctcctggt gtaggccgtg gcctctgccc tctcctatct
      541 cctccctccc tgagtttgtg tatcatgtct gttagcgtgt actgttttca gccagtttct
      601 attatattgt gctacatctg attttgtatt tttatctttg tctgaacagg gttgtttttc
      661 accatctcct cgtcctcttc taccattttt tagtttccct ttttaattga aatgatagct
      721 aagacaggtg aaaggcagaa cgtcaccatt tagcaacaag aagaaccagg agaaacttac
      781 gccagggata gtagatattt actggtccct tgtgcttttg atgtaagatc tctctaaatg
      841 ctactgtgac tgaggaactt tctttgggta gcagtccctc ccacccctta tcatttgaaa
      901 aaaatttgat aatgttaggc ctattgtcca ggtgccattt attaatgtcc tatgtgtttt
      961 tgacgtgtgt aaccttatat tctcccatat ctgaggcaat aacagctcaa agggattctg
     1021 gggaaatcat ggctgtttgg ctggagcgta cagcagagac agtgctagca ggaaacagcc
     1081 tctccttggt aaatggggag ttcttgtgga gccctcatcc tcctcctccc acaacaaggt
     1141 cgggtgtatt ctccctccat gaagaaagtg attacatgtt cactgtcgag cagcctaata
     1201 aatatgttga tatttcgttt taaatgaa
//
