LOCUS       NM_001414914            1865 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus syntrophin, gamma 2 (Sntg2), transcript variant
            1, mRNA.
ACCESSION   NM_001414914 XM_006239967
VERSION     NM_001414914.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1865)
  AUTHORS   Yamakawa,H., Oyama,S., Mitsuhashi,H., Sasagawa,N., Uchino,S.,
            Kohsaka,S. and Ishiura,S.
  TITLE     Neuroligins 3 and 4X interact with syntrophin-gamma2, and the
            interactions are affected by autism-related mutations
  JOURNAL   Biochem Biophys Res Commun 355 (1), 41-46 (2007)
   PUBMED   17292328
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Dec 14, 2022 this sequence version replaced XM_006239967.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643288.26316.1,
                                           SRR26643298.35095.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840122, SAMN12840129
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-171               JAXUCZ010000006.1  52730802-52730972   c
            172-309             JAXUCZ010000006.1  52661453-52661590   c
            310-366             JAXUCZ010000006.1  52656240-52656296   c
            367-424             JAXUCZ010000006.1  52656085-52656142   c
            425-468             JAXUCZ010000006.1  52637886-52637929   c
            469-510             JAXUCZ010000006.1  52637743-52637784   c
            511-598             JAXUCZ010000006.1  52625052-52625139   c
            599-690             JAXUCZ010000006.1  52614950-52615041   c
            691-818             JAXUCZ010000006.1  52605083-52605210   c
            819-948             JAXUCZ010000006.1  52590372-52590501   c
            949-987             JAXUCZ010000006.1  52588584-52588622   c
            988-1107            JAXUCZ010000006.1  52581766-52581885   c
            1108-1179           JAXUCZ010000006.1  52574034-52574105   c
            1180-1386           JAXUCZ010000006.1  52571267-52571473   c
            1387-1479           JAXUCZ010000006.1  52547877-52547969   c
            1480-1590           JAXUCZ010000006.1  52541574-52541684   c
            1591-1865           JAXUCZ010000006.1  52529481-52529755   c
FEATURES             Location/Qualifiers
     source          1..1865
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q16"
     gene            1..1865
                     /gene="Sntg2"
                     /note="syntrophin, gamma 2"
                     /db_xref="GeneID:298936"
                     /db_xref="RGD:1311276"
     exon            1..171
                     /gene="Sntg2"
                     /inference="alignment:Splign:2.1.0"
     CDS             100..1722
                     /gene="Sntg2"
                     /note="isoform 1 is encoded by transcript variant 1;
                     gamma-2-syntrophin"
                     /codon_start=1
                     /product="gamma-2-syntrophin isoform 1"
                     /protein_id="NP_001401843.1"
                     /db_xref="GeneID:298936"
                     /db_xref="RGD:1311276"
                     /translation="MSAEGSQSLAAPRGRPSHLLVPARTKTALALLYDEGLENAYDVR
                     LKLTKEVLTIQKQDVVCIGGAPPGANHRTVTLRRQPVGGLGLSIKGGAEHGVPVVISK
                     IFKDQAADQTEMLFIGDAVLQVNGINVENATHEEVVHLLRNAGDVVTITVEYLREAPS
                     FLKLPLGSPGPSSDHSSRASSPLFDSGLHLNGHCSHTAPSSPSSPIANEPKYEKRWLD
                     TLSVPLSMARISRYKAGTEKLRSSALEVLALDGASTGALQFSTAQDCADWLRAISTNI
                     NELTLQHMKMANKCCSPCDQVVHMGWVNERLQGADNNPQNFRSKFLALRGSSFYIFSA
                     PPVSTLDWGRAERAYNLCEVLFKVHKFWLSDNYWLQANLYLGLQDLDCEDPRSYCFSV
                     LASHGKSHIFSVELGNELAVWEKAFQRATFMEVQRTGSKTYLCSWQGEMLCFTVDFAL
                     GFTCFDSKTKNVLWRFKFSQLKGSSDDGKTRVKLLFQNPDTKQIETKELEFQDLTAVL
                     HCIHSFIAAKVASLDPAFMDSQSVARRYMCSS"
     exon            172..309
                     /gene="Sntg2"
                     /inference="alignment:Splign:2.1.0"
     exon            310..366
                     /gene="Sntg2"
                     /inference="alignment:Splign:2.1.0"
     exon            367..424
                     /gene="Sntg2"
                     /inference="alignment:Splign:2.1.0"
     exon            425..468
                     /gene="Sntg2"
                     /inference="alignment:Splign:2.1.0"
     exon            469..510
                     /gene="Sntg2"
                     /inference="alignment:Splign:2.1.0"
     exon            511..598
                     /gene="Sntg2"
                     /inference="alignment:Splign:2.1.0"
     exon            599..690
                     /gene="Sntg2"
                     /inference="alignment:Splign:2.1.0"
     exon            691..818
                     /gene="Sntg2"
                     /inference="alignment:Splign:2.1.0"
     exon            819..948
                     /gene="Sntg2"
                     /inference="alignment:Splign:2.1.0"
     exon            949..987
                     /gene="Sntg2"
                     /inference="alignment:Splign:2.1.0"
     exon            988..1107
                     /gene="Sntg2"
                     /inference="alignment:Splign:2.1.0"
     exon            1108..1179
                     /gene="Sntg2"
                     /inference="alignment:Splign:2.1.0"
     exon            1180..1386
                     /gene="Sntg2"
                     /inference="alignment:Splign:2.1.0"
     exon            1387..1479
                     /gene="Sntg2"
                     /inference="alignment:Splign:2.1.0"
     exon            1480..1590
                     /gene="Sntg2"
                     /inference="alignment:Splign:2.1.0"
     exon            1591..1865
                     /gene="Sntg2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtccgcccca gcctgtccac agaggggcgc gggcgccgtg caggcgctgg acttaggagc
       61 tccggagccc gaagcgcacg cctagccgcg tgggcggcga tgagcgccga gggatcgcag
      121 tccctggccg ccccccgcgg gcgtcctagt cacctactgg tgcccgcgcg gaccaaaaca
      181 gccctggcct tgttgtatga tgaaggattg gaaaatgcct acgatgtccg cctgaagctg
      241 acaaaagagg tgctgacgat ccaaaagcaa gatgtcgtct gcatcggggg agctcctcct
      301 ggtgctaatc acagaactgt tacacttcgc agacaacctg taggtggcct gggcctaagt
      361 atcaagggag gagcagagca tggggtgcct gtcgtcatat ccaaaatatt caaagaccaa
      421 gcagctgacc agacagagat gttgttcata ggagatgctg tgctacaggt taatggcatt
      481 aatgtagaaa atgcaacaca tgaagaagtg gtgcatcttc tgagaaatgc tggcgatgtt
      541 gtcaccatca ctgttgagta cctcagggaa gcaccctcat ttctgaagct gcctttaggg
      601 tccccagggc catccagtga ccacagcagc agggcctcat cgcctctctt tgacagtggt
      661 ctgcacctga atggacactg cagccacaca gctccatcat cgccttcctc acccatagct
      721 aatgaaccaa agtatgagaa gcgttggcta gacaccttgt cagtcccttt gtctatggct
      781 cggatctcca gatacaaagc tggaacagaa aagctcaggt ccagtgcatt ggaggtgctg
      841 gccctggacg gagccagcac aggagccctt cagttctcca ctgcccagga ctgtgcggat
      901 tggttgcgtg caatctcaac caacatcaat gaactgacgc ttcaacatat gaaaatggca
      961 aacaaatgct gttctccctg tgaccaggtg gtgcacatgg gatgggtaaa tgagaggctc
     1021 caaggagctg acaacaaccc tcagaacttc agatccaagt tcttggccct gaggggttca
     1081 tcattctaca tttttagcgc tcctccggta agcacactgg attggggacg agcagaacgt
     1141 gcctataacc tctgtgaggt gctgtttaaa gttcacaagt tttggctttc agataactac
     1201 tggctacagg caaacttgta tcttggtctc caagatttag actgtgaaga ccccaggtca
     1261 tactgcttca gcgtcctagc cagccatggg aaaagccaca tcttcagtgt ggagctgggt
     1321 aacgagctag ctgtgtggga aaaggcattc caaagagcaa ctttcatgga agttcagaga
     1381 actgggtcca aaacgtatct gtgcagctgg caaggagaaa tgctgtgctt cacggtggac
     1441 tttgctctgg gattcacctg ctttgacagt aaaacaaaga acgtactctg gagattcaag
     1501 ttctcccagc ttaagggatc ttcagatgac gggaaaactc gagtaaagct gctgtttcag
     1561 aatccggaca ccaaacagat tgaaacgaag gagctggagt tccaggattt gacggcggtc
     1621 ctccactgca tccactcctt cattgctgcc aaggtggcct ccctagaccc tgcattcatg
     1681 gacagccaga gcgtggcaag aagatacatg tgcagcagct aaaacaagtc taaggagtgc
     1741 tgcgtgggaa cagttaaatt attttcttaa gaaacaaccc tttcctgcac aatgttgcaa
     1801 ctttgtgtgg ttttataatg agcctatagt tgtgatacca ataaagacat cgctagtttc
     1861 acaga
//
