LOCUS       NM_001106720            1664 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus syntrophin, gamma 2 (Sntg2), transcript variant
            3, mRNA.
ACCESSION   NM_001106720 XM_001072522 XM_234043
VERSION     NM_001106720.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1664)
  AUTHORS   Yamakawa,H., Oyama,S., Mitsuhashi,H., Sasagawa,N., Uchino,S.,
            Kohsaka,S. and Ishiura,S.
  TITLE     Neuroligins 3 and 4X interact with syntrophin-gamma2, and the
            interactions are affected by autism-related mutations
  JOURNAL   Biochem Biophys Res Commun 355 (1), 41-46 (2007)
   PUBMED   17292328
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Dec 14, 2022 this sequence version replaced NM_001106720.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN16418988,
                              SAMN16676784 [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-171               JAXUCZ010000006.1  52730802-52730972   c
            172-309             JAXUCZ010000006.1  52661453-52661590   c
            310-397             JAXUCZ010000006.1  52625052-52625139   c
            398-489             JAXUCZ010000006.1  52614950-52615041   c
            490-617             JAXUCZ010000006.1  52605083-52605210   c
            618-747             JAXUCZ010000006.1  52590372-52590501   c
            748-786             JAXUCZ010000006.1  52588584-52588622   c
            787-906             JAXUCZ010000006.1  52581766-52581885   c
            907-978             JAXUCZ010000006.1  52574034-52574105   c
            979-1185            JAXUCZ010000006.1  52571267-52571473   c
            1186-1278           JAXUCZ010000006.1  52547877-52547969   c
            1279-1389           JAXUCZ010000006.1  52541574-52541684   c
            1390-1664           JAXUCZ010000006.1  52529481-52529755   c
FEATURES             Location/Qualifiers
     source          1..1664
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q16"
     gene            1..1664
                     /gene="Sntg2"
                     /note="syntrophin, gamma 2"
                     /db_xref="GeneID:298936"
                     /db_xref="RGD:1311276"
     exon            1..171
                     /gene="Sntg2"
                     /inference="alignment:Splign:2.1.0"
     CDS             100..1521
                     /gene="Sntg2"
                     /note="isoform 3 is encoded by transcript variant 3;
                     gamma-2-syntrophin"
                     /codon_start=1
                     /product="gamma-2-syntrophin isoform 3"
                     /protein_id="NP_001100190.1"
                     /db_xref="GeneID:298936"
                     /db_xref="RGD:1311276"
                     /translation="MSAEGSQSLAAPRGRPSHLLVPARTKTALALLYDEGLENAYDVR
                     LKLTKEVLTIQKQDVVCIGGAPPGANVHLLRNAGDVVTITVEYLREAPSFLKLPLGSP
                     GPSSDHSSRASSPLFDSGLHLNGHCSHTAPSSPSSPIANEPKYEKRWLDTLSVPLSMA
                     RISRYKAGTEKLRSSALEVLALDGASTGALQFSTAQDCADWLRAISTNINELTLQHMK
                     MANKCCSPCDQVVHMGWVNERLQGADNNPQNFRSKFLALRGSSFYIFSAPPVSTLDWG
                     RAERAYNLCEVLFKVHKFWLSDNYWLQANLYLGLQDLDCEDPRSYCFSVLASHGKSHI
                     FSVELGNELAVWEKAFQRATFMEVQRTGSKTYLCSWQGEMLCFTVDFALGFTCFDSKT
                     KNVLWRFKFSQLKGSSDDGKTRVKLLFQNPDTKQIETKELEFQDLTAVLHCIHSFIAA
                     KVASLDPAFMDSQSVARRYMCSS"
     exon            172..309
                     /gene="Sntg2"
                     /inference="alignment:Splign:2.1.0"
     exon            310..397
                     /gene="Sntg2"
                     /inference="alignment:Splign:2.1.0"
     exon            398..489
                     /gene="Sntg2"
                     /inference="alignment:Splign:2.1.0"
     exon            490..617
                     /gene="Sntg2"
                     /inference="alignment:Splign:2.1.0"
     exon            618..747
                     /gene="Sntg2"
                     /inference="alignment:Splign:2.1.0"
     exon            748..786
                     /gene="Sntg2"
                     /inference="alignment:Splign:2.1.0"
     exon            787..906
                     /gene="Sntg2"
                     /inference="alignment:Splign:2.1.0"
     exon            907..978
                     /gene="Sntg2"
                     /inference="alignment:Splign:2.1.0"
     exon            979..1185
                     /gene="Sntg2"
                     /inference="alignment:Splign:2.1.0"
     exon            1186..1278
                     /gene="Sntg2"
                     /inference="alignment:Splign:2.1.0"
     exon            1279..1389
                     /gene="Sntg2"
                     /inference="alignment:Splign:2.1.0"
     exon            1390..1664
                     /gene="Sntg2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtccgcccca gcctgtccac agaggggcgc gggcgccgtg caggcgctgg acttaggagc
       61 tccggagccc gaagcgcacg cctagccgcg tgggcggcga tgagcgccga gggatcgcag
      121 tccctggccg ccccccgcgg gcgtcctagt cacctactgg tgcccgcgcg gaccaaaaca
      181 gccctggcct tgttgtatga tgaaggattg gaaaatgcct acgatgtccg cctgaagctg
      241 acaaaagagg tgctgacgat ccaaaagcaa gatgtcgtct gcatcggggg agctcctcct
      301 ggtgctaatg tgcatcttct gagaaatgct ggcgatgttg tcaccatcac tgttgagtac
      361 ctcagggaag caccctcatt tctgaagctg cctttagggt ccccagggcc atccagtgac
      421 cacagcagca gggcctcatc gcctctcttt gacagtggtc tgcacctgaa tggacactgc
      481 agccacacag ctccatcatc gccttcctca cccatagcta atgaaccaaa gtatgagaag
      541 cgttggctag acaccttgtc agtccctttg tctatggctc ggatctccag atacaaagct
      601 ggaacagaaa agctcaggtc cagtgcattg gaggtgctgg ccctggacgg agccagcaca
      661 ggagcccttc agttctccac tgcccaggac tgtgcggatt ggttgcgtgc aatctcaacc
      721 aacatcaatg aactgacgct tcaacatatg aaaatggcaa acaaatgctg ttctccctgt
      781 gaccaggtgg tgcacatggg atgggtaaat gagaggctcc aaggagctga caacaaccct
      841 cagaacttca gatccaagtt cttggccctg aggggttcat cattctacat ttttagcgct
      901 cctccggtaa gcacactgga ttggggacga gcagaacgtg cctataacct ctgtgaggtg
      961 ctgtttaaag ttcacaagtt ttggctttca gataactact ggctacaggc aaacttgtat
     1021 cttggtctcc aagatttaga ctgtgaagac cccaggtcat actgcttcag cgtcctagcc
     1081 agccatggga aaagccacat cttcagtgtg gagctgggta acgagctagc tgtgtgggaa
     1141 aaggcattcc aaagagcaac tttcatggaa gttcagagaa ctgggtccaa aacgtatctg
     1201 tgcagctggc aaggagaaat gctgtgcttc acggtggact ttgctctggg attcacctgc
     1261 tttgacagta aaacaaagaa cgtactctgg agattcaagt tctcccagct taagggatct
     1321 tcagatgacg ggaaaactcg agtaaagctg ctgtttcaga atccggacac caaacagatt
     1381 gaaacgaagg agctggagtt ccaggatttg acggcggtcc tccactgcat ccactccttc
     1441 attgctgcca aggtggcctc cctagaccct gcattcatgg acagccagag cgtggcaaga
     1501 agatacatgt gcagcagcta aaacaagtct aaggagtgct gcgtgggaac agttaaatta
     1561 ttttcttaag aaacaaccct ttcctgcaca atgttgcaac tttgtgtggt tttataatga
     1621 gcctatagtt gtgataccaa taaagacatc gctagtttca caga
//
