LOCUS       NM_001411862            6668 bp    mRNA    linear   ROD 09-APR-2024
DEFINITION  Rattus norvegicus syntrophin, gamma 1 (Sntg1), mRNA.
ACCESSION   NM_001411862 XM_039110526
VERSION     NM_001411862.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 6668)
  AUTHORS   Hogan,A., Yakubchyk,Y., Chabot,J., Obagi,C., Daher,E., Maekawa,K.
            and Gee,S.H.
  TITLE     The phosphoinositol 3,4-bisphosphate-binding protein TAPP1
            interacts with syntrophins and regulates actin cytoskeletal
            organization
  JOURNAL   J Biol Chem 279 (51), 53717-53724 (2004)
   PUBMED   15485858
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Sep 8, 2022 this sequence version replaced XM_039110526.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.1105256.1,
                                           SRR26360194.1074516.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMEA5760433
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1162              JAXUCZ010000005.1  14769581-14770742
            1163-1252           JAXUCZ010000005.1  14943074-14943163
            1253-1316           JAXUCZ010000005.1  15046102-15046165
            1317-1370           JAXUCZ010000005.1  15207208-15207261
            1371-1505           JAXUCZ010000005.1  15226837-15226971
            1506-1562           JAXUCZ010000005.1  15276255-15276311
            1563-1620           JAXUCZ010000005.1  15279142-15279199
            1621-1664           JAXUCZ010000005.1  15280154-15280197
            1665-1706           JAXUCZ010000005.1  15280285-15280326
            1707-1809           JAXUCZ010000005.1  15326781-15326883
            1810-1892           JAXUCZ010000005.1  15345609-15345691
            1893-2023           JAXUCZ010000005.1  15360884-15361014
            2024-2153           JAXUCZ010000005.1  15369373-15369502
            2154-2192           JAXUCZ010000005.1  15403710-15403748
            2193-2309           JAXUCZ010000005.1  15492144-15492260
            2310-2381           JAXUCZ010000005.1  15494218-15494289
            2382-2534           JAXUCZ010000005.1  15518009-15518161
            2535-2627           JAXUCZ010000005.1  15519975-15520067
            2628-2738           JAXUCZ010000005.1  15564598-15564708
            2739-6668           JAXUCZ010000005.1  15579539-15583468
FEATURES             Location/Qualifiers
     source          1..6668
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q11"
     gene            1..6668
                     /gene="Sntg1"
                     /gene_synonym="RGD1560290"
                     /note="syntrophin, gamma 1"
                     /db_xref="GeneID:500394"
                     /db_xref="RGD:1560290"
     exon            1..1162
                     /gene="Sntg1"
                     /gene_synonym="RGD1560290"
                     /inference="alignment:Splign:2.1.0"
     exon            1163..1252
                     /gene="Sntg1"
                     /gene_synonym="RGD1560290"
                     /inference="alignment:Splign:2.1.0"
     exon            1253..1316
                     /gene="Sntg1"
                     /gene_synonym="RGD1560290"
                     /inference="alignment:Splign:2.1.0"
     exon            1317..1370
                     /gene="Sntg1"
                     /gene_synonym="RGD1560290"
                     /inference="alignment:Splign:2.1.0"
     CDS             1344..2900
                     /gene="Sntg1"
                     /gene_synonym="RGD1560290"
                     /codon_start=1
                     /product="gamma-1-syntrophin"
                     /protein_id="NP_001398791.1"
                     /db_xref="GeneID:500394"
                     /db_xref="RGD:1560290"
                     /translation="MDFRTTCEETKTGVCLLQDGNQEPFKVRLHLARDLLMLQEQDVL
                     CVSGEPFYSGERTVTIRRQTVGGFGLSIKGGAEHNIPVVVSKISKEQRAELSGLLFIG
                     DAILQINGINVRKCRHEEVVQVLRNAGEEVTLTVSFLKRAPAFLKLPLNEDCACAPSD
                     QSSGTSSPLCDSGLHLNYHPNNTDTLSCSSWPTSPGLRWEKRWCDLRLIPLLHARFSQ
                     YVPGTDLSRQNAFQVVAVDGVCSGILQCLSAEDCMDWLQAIATNISNLTKHNIKKINR
                     NFPVNQQIVYMGWCEAWEQESLQDRVYTPVFLALRGSCLYRFLSPPVTTWDWTRAEKT
                     FSVCEIMCKVLKDSDLLDRRKHCFTMQSECGEDLYFSVELESDLAQWERAFQTATFLE
                     VERIQCKTYACVLESHLMGLTIDFSTGFICFDAATKAVLWRYKFSQLKGSSDDGKSKI
                     KFLFQNQDTKQIEAKELEFSNLFAVLHCIHSFFAAKVACLDPLFLGNQAATSAAAASS
                     ASTSKAKHMA"
     exon            1371..1505
                     /gene="Sntg1"
                     /gene_synonym="RGD1560290"
                     /inference="alignment:Splign:2.1.0"
     exon            1506..1562
                     /gene="Sntg1"
                     /gene_synonym="RGD1560290"
                     /inference="alignment:Splign:2.1.0"
     exon            1563..1620
                     /gene="Sntg1"
                     /gene_synonym="RGD1560290"
                     /inference="alignment:Splign:2.1.0"
     exon            1621..1664
                     /gene="Sntg1"
                     /gene_synonym="RGD1560290"
                     /inference="alignment:Splign:2.1.0"
     exon            1665..1706
                     /gene="Sntg1"
                     /gene_synonym="RGD1560290"
                     /inference="alignment:Splign:2.1.0"
     exon            1707..1809
                     /gene="Sntg1"
                     /gene_synonym="RGD1560290"
                     /inference="alignment:Splign:2.1.0"
     exon            1810..1892
                     /gene="Sntg1"
                     /gene_synonym="RGD1560290"
                     /inference="alignment:Splign:2.1.0"
     exon            1893..2023
                     /gene="Sntg1"
                     /gene_synonym="RGD1560290"
                     /inference="alignment:Splign:2.1.0"
     exon            2024..2153
                     /gene="Sntg1"
                     /gene_synonym="RGD1560290"
                     /inference="alignment:Splign:2.1.0"
     exon            2154..2192
                     /gene="Sntg1"
                     /gene_synonym="RGD1560290"
                     /inference="alignment:Splign:2.1.0"
     exon            2193..2309
                     /gene="Sntg1"
                     /gene_synonym="RGD1560290"
                     /inference="alignment:Splign:2.1.0"
     exon            2310..2381
                     /gene="Sntg1"
                     /gene_synonym="RGD1560290"
                     /inference="alignment:Splign:2.1.0"
     exon            2382..2534
                     /gene="Sntg1"
                     /gene_synonym="RGD1560290"
                     /inference="alignment:Splign:2.1.0"
     exon            2535..2627
                     /gene="Sntg1"
                     /gene_synonym="RGD1560290"
                     /inference="alignment:Splign:2.1.0"
     exon            2628..2738
                     /gene="Sntg1"
                     /gene_synonym="RGD1560290"
                     /inference="alignment:Splign:2.1.0"
     exon            2739..6668
                     /gene="Sntg1"
                     /gene_synonym="RGD1560290"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aagctccctg gccctgccgc ccgcgccgag tcccgcggcc gcgactaagc tctctgccgc
       61 gctacaatct cttggaaaca aaggtattct tcctggccct tccacggctt ctgcattctc
      121 tggcaagagt ctgtctgtgt atctgggagc tgagcatcct gactctgtcg tctcggaatt
      181 ccacctagag cttcgaaaat gtgaacgtgt ccccgctctg gctgggaagc aagatcgcgg
      241 gggacccccg aaatagccct tatcatctta tgtaattaag gacccacgag cttcccaaag
      301 cacctctaca gtctccacag tgttcagctt ctctcctcct cccccttctc tctcctgtct
      361 ctttctctct aaccccacct ccctgtgagc gcttgtgcgc gcgcccgtgt tcgtgcgttc
      421 tttttcattt ctacctttag gaaacctact cagagccgct gtgaactcag aagaggctca
      481 gctcttgttt tcccacggat tcctgcctct ctggaaacgc tgccaacgta tacacatgag
      541 ggtatcaagc tggagagatc attaatcccc gagtagtgaa acacggcgga gaaacggcaa
      601 agctggaagt ctggaagcgg ccttagcagg agtgtagggt ctggagtggg ctaagggggt
      661 cctgtccccc tcgcttcagc accggagggg atggacagcg tctcccagct gcgtagctgc
      721 ctggggggac ccaactgtgt tgctgctgct gcctttgctg ctgtcctcgc ggccacagtc
      781 ttcaacaaga gctcttagca gctaaaaggc ggtgcctcca gtccccttct ttgatggatg
      841 aaaaccagcc cttctcatcc tctgccactt atatctactc ggctccacgg agttaaactc
      901 taggcagcaa ctttacgcag aattttctaa acggaactgg ggggaatgca ggcagaagag
      961 tggagttgaa gttcttagag gcaccaagga gccatgggcg ctgcagtagg aattgaaata
     1021 ctcaaaggcc cacagttttt aaaataagca cgtccctgag tggattgcag ctgctgtgga
     1081 gatagctttg tgagaggtcg gagattctaa accccgacgt taaagaagtg gagtaaaagg
     1141 cgtcgacacc tctgctcagc agggatgtga agcctagacc acagcagacc cagtcctgag
     1201 cagaagattt gttgcaagtg aatccaggga gtttagcaca aagcatcata agatctggca
     1261 gcgagtgctt ctactgctgt aagaacaagc ggtcaccctg ggttcctgca gccaagacca
     1321 catccttcac agtgccacag cacatggatt tcagaactac ctgtgaggag acaaagacag
     1381 gggtttgctt gctacaagat ggtaatcaag aaccttttaa agtccggcta caccttgcca
     1441 gagacctgct gatgctacag gagcaggatg tgctgtgtgt gtctggtgag cctttctatt
     1501 ctggtgaaag aaccgtgact atcagaagac agacagtagg aggattcgga ttaagcataa
     1561 agggaggtgc agaacataac attccagttg tcgtttccaa aatctccaag gagcaaagag
     1621 cggaactgtc gggactgctt ttcattgggg atgcaatttt acagataaat ggaattaatg
     1681 tgaggaaatg cagacatgaa gaagtggttc aggttcttcg gaatgctggg gaggaagtga
     1741 ccctgacagt gtcattttta aaaagagctc ctgctttcct caaactccca cttaacgaag
     1801 actgtgcatg tgctccgagt gaccaaagca gtggtacctc ctctcctctt tgtgacagtg
     1861 gattacacct caactaccat ccaaacaaca cagacaccct ttcctgctct tcatggccca
     1921 catctccagg cctgcggtgg gagaagcgct ggtgtgacct caggctcatt cccctactac
     1981 atgcccgctt ttcccagtat gtgcccggga ctgacctgag tcggcagaac gctttccaag
     2041 ttgttgctgt ggatggagtc tgcagtggaa ttcttcagtg cctctctgct gaagactgca
     2101 tggattggct ccaagcaata gcaactaaca tttcaaacct cacaaagcac aatatcaaaa
     2161 aaatcaacag aaattttcct gtaaaccagc agatagtcta catgggctgg tgtgaagcct
     2221 gggagcagga atccctccag gaccgtgtgt acacacctgt gtttcttgcc ctgcggggct
     2281 cctgtcttta caggttcctg tcacctccag tgaccacctg ggactggact cgagcagaga
     2341 agaccttctc cgtgtgtgag atcatgtgca aagttctcaa ggacagtgac ctactggatc
     2401 ggcggaaaca ttgcttcact atgcagtccg agtgtgggga ggacctatac ttctctgtgg
     2461 agttagaaag tgaccttgcc cagtgggaac gagccttcca aacagccacc ttccttgaag
     2521 tggagcgcat acagtgcaag acctatgcat gtgtgctgga gagtcaccta atgggcctca
     2581 ctattgactt tagcacaggc ttcatctgct ttgatgcagc aacaaaggct gtactttgga
     2641 ggtataaatt ttctcagctt aaaggatcat cagatgatgg caaaagcaaa atcaaatttt
     2701 tgtttcagaa tcaagatacg aaacagattg aagcaaagga gttggaattt tcaaatttgt
     2761 ttgctgttct tcactgtatt cattcatttt ttgctgccaa agtagcttgt ttggaccctc
     2821 tgtttttagg taatcaggct gctacttccg ctgctgctgc cagctctgct tctacaagca
     2881 aggcaaaaca catggcttga catgctgagc tctgcctgac agccggcagg gccactcgct
     2941 ccctacttcc accctagaga gaccatgctg tcaccaagtc aatcatggag tcagattgca
     3001 attccagcag cagaaaggtc aggaggcatc tgcaaatgac cctgggaggg cagagaaaat
     3061 tattccttcc cccctgatct ctatcaggat acagctgtca ctgtgtttgg tgacaaaggg
     3121 atgattggtg taaagtatgt aaatattaat aaaaattgta agctacctat aaataaaata
     3181 ccaattaaat gactatttct ctattttaga tgattttcta tgacaaatgc atattgggcc
     3241 agatcatgaa tcaatgccct atcattgtat tatgagtgta aagaagttaa aaaaataaaa
     3301 gcaaggcaag tagcatgcac attaaacaga caaacaaacg aacaacaaaa tgaaaacaaa
     3361 tgacctcaaa gacagaagca ccttaactta tccgtgtgag ttacttccta tattcccatc
     3421 ccatggttcc atatgagcac tccagctgtg tttatcttat tgtaaaatat tctggagaat
     3481 taataaagac aattacattg gcttgtgaaa acaccctagg aaatgaaaca tttcttcttt
     3541 ggtgaatgtt actaatatgt tttatattag aaaatggtat taattatgaa tgtcaaaaac
     3601 attctacact taaacacatt tcttcttttt ttgcttaatg aggtttatga acaaatcaac
     3661 attaataaat ttaaatgtcc caaaactctt gcagaaaata atcaataaat tctgtgtaag
     3721 aaacaagtct ttgttatagt tttctcttta gtcattaact aaaaagttcc tgaaaggtac
     3781 tctcagaggt tatgaaaact ggtgatattt tcatttgagt ttacttatgt gtaaatcaag
     3841 tgagatttga aaacaagcat caaacaagca tcgtgttata aagttccatg gaaagggatt
     3901 gaatagtgtc ccatgaggta ggccgctgca ggtagcttgt ttcagcacta ggaaggtaaa
     3961 acatcaaaaa ggtgtattgt ggggtgcgca ctcatagcca agaactggag attgctcatc
     4021 atacaaagca cgaggcagtc tctgcccttt actaaggctc tgttggtgtc tgctttaaac
     4081 aactagctgc ttgatcaaaa gtaaacaaat aaagcccact tttatcggta catatttcaa
     4141 ttgaatattg tttgattccc cttaaaatga tcaatttcta ataagtaggt cagtatccct
     4201 tccttaaata ggaaacaatc ccacattaga ctcaagagga aagcaaaatc ttttctttaa
     4261 aggaacactt acgcctaagt gtaaagtcat caaatagtga actattttca taataattag
     4321 aaatactaat ttattttaca ctggattaag tgaaatctca aaatgagata tggaaatgtt
     4381 aagttagatc taaagatgcc ttgccaacag aacatggaaa tttgataata gaggtttata
     4441 tattctattt gaacaaggaa tttcagtgta tacccacaat agtcacttgg ggagtactgc
     4501 ttactagagc caccaaacac aaaggctatg gtaattctga atttcactaa gttctgagtt
     4561 ccacctgtct aacatagagg agaaagagta gagagagaca cccttgctat cttttttgca
     4621 agttctgctg ctgcacatgg tgggtgctgc ccccagggtg ggtgaccact ggaatttaaa
     4681 acatacagtc tcctgtaatc attcaaaaca acttcataga gctcaagaga tggcttagtg
     4741 gttaagaatc tttactgctc tttcagggga ccgggatttg attgcagaac ccacacagtg
     4801 actcagagtc atccgggact gcaatttcag gggttttaat gccctcctca aaactcagta
     4861 gcaccagatt cacaggtgca tatacaaaca tgcaggtgaa acatcgccta aaaaatctaa
     4921 aagtagattt tacaaagctc tatttaagca tacaaaccct tttttgctgt tgttgttata
     4981 ttaactattc tatcagtgcc cctgttgtaa aaaccagctg aactgtgaga ttagatctga
     5041 gtatagaact tgtaccctat gcgtgtttgt agacatatga atatatgtat agagacaagt
     5101 acaaaatgtt gagcttaatt atactgaaag aaaatgtttc acatgcatat atagctatat
     5161 atgtattgag ctataaagtg ttggttgaat taaaacctac tagaacaacc ttatttttct
     5221 tactttttat aatattggtt aaaatatcac ccaagctgaa atttctattt aacatgatta
     5281 gtataatagg taccaattag gaaaatactt ttctggtttt catacattta ccagttagta
     5341 tttaatgctt tctttatagt gtaattaagc actgtgagat gctatgactt tggctactta
     5401 aatgagaaaa ctgtagaaat tcatgaaaat acagagttca acttcacagt aagttaggtt
     5461 aagatataga tttttttttc taacaatccc aagtttgagt attaagcaaa catgagaatg
     5521 cttaattatg tgttaacccc ttcagtgcct ttttggatgt gtatgcacat acgtgtgtgt
     5581 gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgcctgt gtagatcatt
     5641 aaagggctta ttattgtgta cacactgcaa gcttaaagga aaatgtagtt aagtgtgtta
     5701 gagagaggag tttaaaacag ctaagatgag aatgtctttt ctgtggtaaa caaaaaaatt
     5761 atctgaaata aagtgcatca aagcaggagg acttgagttt gttataggtt aactccaaaa
     5821 ttaccttaat agatgattta aatataacaa atacccaatg cttcctatct aattctattt
     5881 tatagagcag aatgtgccag taatttctta ctcatatttc aggcattaac tgacttcttg
     5941 ttttaaaacc tttgcttata aacctgtcat tcagcaagaa gaaaagaaat tgaagtccag
     6001 tcaatactgg caagcagaga aggcacttcc acataggcag tgtggttgtc cgctggtata
     6061 ttagctaatg aatccacata gccctcattg acagtgacta agattgttca tagtatagtc
     6121 tgggttgaat gctggactta agtgaagctt gacttctgag gaaacctcaa tctgaacaat
     6181 cacttcattt tattgtttca caccagcagt gtggagaagc tttatcagtc aggcacatgc
     6241 ttgtgcttaa ctttgtaagg taagtgtctg tgctctaacc caacattttg tttatgttgg
     6301 tattgatggt ctcatacact aaaggtctat ctcaatccat acctttaaaa atcactgttt
     6361 gtgttttgtt ctgactcctt aatactttaa atcatgtcac tttacattat agcttacctt
     6421 taaagtaaac taaaatatta taaatatata ttttatacat attacaatgc aatgaaaaaa
     6481 taaaatgtaa aatgtaaata tatttatttc ctatttaaat gatttggtgg atgtttgtaa
     6541 aatgttaatt cagatctgtg aaaatttgcc actctgtctt tgagttcatt aatgtacaat
     6601 tactaaaaaa aatacatttt ttaataaatc atactagaaa ataaaaatga aagtttttct
     6661 acgttcaa
//
