LOCUS       NM_001135085             462 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus small nuclear ribonucleoprotein polypeptide G
            (Snrpg), mRNA.
ACCESSION   NM_001135085 XM_001058102 XM_001058164 XM_001058230 XM_001069500
            XM_001069539 XM_001069586
VERSION     NM_001135085.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 462)
  AUTHORS   Bertram,K., Agafonov,D.E., Dybkov,O., Haselbach,D., Leelaram,M.N.,
            Will,C.L., Urlaub,H., Kastner,B., Luhrmann,R. and Stark,H.
  TITLE     Cryo-EM Structure of a Pre-catalytic Human Spliceosome Primed for
            Activation
  JOURNAL   Cell 170 (4), 701-713 (2017)
   PUBMED   28781166
REFERENCE   2  (bases 1 to 462)
  AUTHORS   Bertram,K., Agafonov,D.E., Liu,W.T., Dybkov,O., Will,C.L.,
            Hartmuth,K., Urlaub,H., Kastner,B., Stark,H. and Luhrmann,R.
  TITLE     Cryo-EM structure of a human spliceosome activated for step 2 of
            splicing
  JOURNAL   Nature 542 (7641), 318-323 (2017)
   PUBMED   28076346
REFERENCE   3  (bases 1 to 462)
  AUTHORS   Agafonov,D.E., Kastner,B., Dybkov,O., Hofele,R.V., Liu,W.T.,
            Urlaub,H., Luhrmann,R. and Stark,H.
  TITLE     Molecular architecture of the human U4/U6.U5 tri-snRNP
  JOURNAL   Science 351 (6280), 1416-1420 (2016)
   PUBMED   26912367
REFERENCE   4  (bases 1 to 462)
  AUTHORS   Kondo,Y., Oubridge,C., van Roon,A.M. and Nagai,K.
  TITLE     Crystal structure of human U1 snRNP, a small nuclear
            ribonucleoprotein particle, reveals the mechanism of 5' splice site
            recognition
  JOURNAL   Elife 4, e04986 (2015)
   PUBMED   25555158
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 462)
  AUTHORS   Lin,S.J., Chang,K.P., Hsu,C.W., Chi,L.M., Chien,K.Y., Liang,Y.,
            Tsai,M.H., Lin,Y.T. and Yu,J.S.
  TITLE     Low-molecular-mass secretome profiling identifies C-C motif
            chemokine 5 as a potential plasma biomarker and therapeutic target
            for nasopharyngeal carcinoma
  JOURNAL   J Proteomics 94, 186-201 (2013)
   PUBMED   24080422
REFERENCE   6  (bases 1 to 462)
  AUTHORS   Chen,Y.I., Moore,R.E., Ge,H.Y., Young,M.K., Lee,T.D. and
            Stevens,S.W.
  TITLE     Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes
            expands the catalog of participating factors
  JOURNAL   Nucleic Acids Res 35 (12), 3928-3944 (2007)
   PUBMED   17537823
REFERENCE   7  (bases 1 to 462)
  AUTHORS   Novakova,Z., Man,P., Novak,P., Hozak,P. and Hodny,Z.
  TITLE     Separation of nuclear protein complexes by blue native
            polyacrylamide gel electrophoresis
  JOURNAL   Electrophoresis 27 (7), 1277-1287 (2006)
   PUBMED   16502463
REFERENCE   8  (bases 1 to 462)
  AUTHORS   Will,C.L., Schneider,C., Hossbach,M., Urlaub,H., Rauhut,R.,
            Elbashir,S., Tuschl,T. and Luhrmann,R.
  TITLE     The human 18S U11/U12 snRNP contains a set of novel proteins not
            found in the U2-dependent spliceosome
  JOURNAL   RNA 10 (6), 929-941 (2004)
   PUBMED   15146077
REFERENCE   9  (bases 1 to 462)
  AUTHORS   Jurica,M.S., Licklider,L.J., Gygi,S.R., Grigorieff,N. and
            Moore,M.J.
  TITLE     Purification and characterization of native spliceosomes suitable
            for three-dimensional structural analysis
  JOURNAL   RNA 8 (4), 426-439 (2002)
   PUBMED   11991638
REFERENCE   10 (bases 1 to 462)
  AUTHORS   Pillai,R.S., Will,C.L., Luhrmann,R., Schumperli,D. and Muller,B.
  TITLE     Purified U7 snRNPs lack the Sm proteins D1 and D2 but contain
            Lsm10, a new 14 kDa Sm D1-like protein
  JOURNAL   EMBO J 20 (19), 5470-5479 (2001)
   PUBMED   11574479
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BI285268.1 and BC168750.1.
            
            On or before Sep 21, 2008 this sequence version replaced
            XM_001058230.1, XM_001058102.1, XM_001058164.1, XM_001069500.1,
            XM_001069586.1, XM_001069539.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ221105.1, FQ222653.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132264
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-34                BI285268.1         401-434             c
            35-462              BC168750.1         1-428
FEATURES             Location/Qualifiers
     source          1..462
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q34"
     gene            1..462
                     /gene="Snrpg"
                     /note="small nuclear ribonucleoprotein polypeptide G"
                     /db_xref="GeneID:681031"
                     /db_xref="RGD:1584713"
     exon            1..102
                     /gene="Snrpg"
                     /inference="alignment:Splign:2.1.0"
     CDS             71..301
                     /gene="Snrpg"
                     /EC_number="1.8.1.4"
                     /codon_start=1
                     /product="small nuclear ribonucleoprotein G"
                     /protein_id="NP_001128557.1"
                     /db_xref="GeneID:681031"
                     /db_xref="RGD:1584713"
                     /translation="MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDE
                     CVEMATSGQQNNIGMVVIRGNSIIMLEALERV"
     exon            103..125
                     /gene="Snrpg"
                     /inference="alignment:Splign:2.1.0"
     exon            126..250
                     /gene="Snrpg"
                     /inference="alignment:Splign:2.1.0"
     exon            251..417
                     /gene="Snrpg"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcctgcctcg cgcgcgtttc tgaggccgct cactccttcg ccgttgtgct gagctcactg
       61 aagagtcgcc atgagcaaag cccaccctcc cgaactgaaa aagtttatgg acaagaagtt
      121 atcattgaag ttaaatggcg gcaggcatgt acaaggaata ctgcggggct ttgacccctt
      181 tatgaacctc gtgattgatg agtgtgtgga gatggcgacc agtgggcaac agaacaacat
      241 cgggatggtg gtcatccgag gaaacagcat catcatgtta gaagccttgg aaagagtcta
      301 accagtgttc agcagtgtgt ccacatccct ccccaaagcg tgcttgattg tgatgtagaa
      361 ctaggtcatg tacattttca tatgaaactt tttgctaaat aaacttttgt gatatcaaaa
      421 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa
//
