LOCUS       NM_001134556            1550 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus small nuclear ribonucleoprotein U5 subunit 40
            (Snrnp40), mRNA.
ACCESSION   NM_001134556 XM_232775 XR_008002
VERSION     NM_001134556.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1550)
  AUTHORS   Bertram K, Agafonov DE, Liu WT, Dybkov O, Will CL, Hartmuth K,
            Urlaub H, Kastner B, Stark H and Luhrmann R.
  TITLE     Cryo-EM structure of a human spliceosome activated for step 2 of
            splicing
  JOURNAL   Nature 542 (7641), 318-323 (2017)
   PUBMED   28076346
REFERENCE   2  (bases 1 to 1550)
  AUTHORS   Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein
            C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J and
            Hentze MW.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   3  (bases 1 to 1550)
  AUTHORS   Jurica MS, Licklider LJ, Gygi SR, Grigorieff N and Moore MJ.
  TITLE     Purification and characterization of native spliceosomes suitable
            for three-dimensional structural analysis
  JOURNAL   RNA 8 (4), 426-439 (2002)
   PUBMED   11991638
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473968.1.
            
            On or before Sep 4, 2008 this sequence version replaced
            XR_008002.1, XM_232775.4.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132261,
                              SAMD00132262 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1550
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..1550
                     /gene="Snrnp40"
                     /gene_synonym="RGD1309198"
                     /note="small nuclear ribonucleoprotein U5 subunit 40"
                     /db_xref="GeneID:313056"
                     /db_xref="RGD:1309198"
     exon            1..183
                     /gene="Snrnp40"
                     /gene_synonym="RGD1309198"
                     /inference="alignment:Splign:2.1.0"
     CDS             40..1116
                     /gene="Snrnp40"
                     /gene_synonym="RGD1309198"
                     /note="small nuclear ribonucleoprotein 40 (U5)"
                     /codon_start=1
                     /product="U5 small nuclear ribonucleoprotein 40 kDa
                     protein"
                     /protein_id="NP_001128028.1"
                     /db_xref="GeneID:313056"
                     /db_xref="RGD:1309198"
                     /translation="MIEQQKRKGPELPLVPVKRPRHELLLGAAGSGPGAGQQQATPGA
                     LLQTGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWSVYGDCDN
                     YATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYP
                     ARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDI
                     KVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVK
                     IFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEV
                     AFHPDEPIILSASSDKRLYMGEIQ"
     exon            184..313
                     /gene="Snrnp40"
                     /gene_synonym="RGD1309198"
                     /inference="alignment:Splign:2.1.0"
     exon            314..407
                     /gene="Snrnp40"
                     /gene_synonym="RGD1309198"
                     /inference="alignment:Splign:2.1.0"
     exon            408..573
                     /gene="Snrnp40"
                     /gene_synonym="RGD1309198"
                     /inference="alignment:Splign:2.1.0"
     exon            574..696
                     /gene="Snrnp40"
                     /gene_synonym="RGD1309198"
                     /inference="alignment:Splign:2.1.0"
     exon            697..817
                     /gene="Snrnp40"
                     /gene_synonym="RGD1309198"
                     /inference="alignment:Splign:2.1.0"
     exon            818..900
                     /gene="Snrnp40"
                     /gene_synonym="RGD1309198"
                     /inference="alignment:Splign:2.1.0"
     exon            901..962
                     /gene="Snrnp40"
                     /gene_synonym="RGD1309198"
                     /inference="alignment:Splign:2.1.0"
     exon            963..1066
                     /gene="Snrnp40"
                     /gene_synonym="RGD1309198"
                     /inference="alignment:Splign:2.1.0"
     exon            1067..1550
                     /gene="Snrnp40"
                     /gene_synonym="RGD1309198"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcgcggttac tggcggcgcc gagggtagtg gttgccgcca tgatcgagca gcagaaacgc
       61 aagggcccag agctacccct ggttcccgtc aagcggccgc gacatgagtt gctgttggga
      121 gccgcaggat ccggccccgg agccgggcaa cagcaggcga ctccgggggc attgctgcag
      181 acgggaccgc caaggtgttc gtcccttcaa gcccccatca tgctgctctc aggacacgaa
      241 ggggaagtgt attgctgcaa gtttcacccc aatggatcta ccctggcttc tgcaggattt
      301 gaccgactca tactactgtg gagcgtctat ggagactgtg acaactatgc tacgttgaag
      361 ggacacagcg gagcagtaat ggagctgcac tacaacacag acggcagcat gctcttctca
      421 gcatcaacag ataaaactgt ggcagtgtgg gatagtgaaa caggagagag agttaaaagg
      481 ctaaaagggc atacttcctt tgtgaactcc tgttatccag ccaggcgggg gccccagctt
      541 gtctgcacag gcagcgacga tggcacagtt aagctttggg acatccggaa gaaagcagcc
      601 atccagacat ttcagaacac ataccaggtg ttagccgtca ccttcaatga cacgagcgat
      661 cagatcatct ctggcggaat agacaatgac atcaaggttt gggacctacg ccaaaacaag
      721 ttaacctaca ccatgagagg ccatgccgac tctgtaactg gcttgagctt gagttctgaa
      781 ggatcttatc tcttgtccaa tgcaatggac aacacagtgc gtgtctggga tgtccggcca
      841 tttgctccca aagagagatg tgtgaagata tttcaaggaa atgtccacaa ctttgaaaag
      901 aacctcctga ggtgttcctg gtcaccagac ggaagcaaga tagcagctgg ctcagcagac
      961 aggtttgtgt acgtgtggga caccacaagc agaaggatcc tgtataagct tcctggtcat
     1021 gctggctcca tcaatgaggt ggccttccat cccgatgagc ccatcatcct ctcagcatcc
     1081 agtgacaaga ggctgtacat gggtgagatc cagtgaaaat gtggaatgga aggccccgtg
     1141 acccgaggct cagactacgc cattggccag agtcagatgg tgtctgggct gacctgcctt
     1201 cagatgacca tcgttagcaa gcagctggac ctgatggcca tattccagca acctcttgta
     1261 ccccatttac cagaaccact gtggcctctg gtaccacccg ccagattcag ggattggttt
     1321 cttctcttta aaaataagat ttcttcagaa agacaaacgt tggtttgata tttcctgttt
     1381 ttaatctagg ctggagacag ggagtggcaa tttgaaattt gttagttgca tttatttttg
     1441 ttttattttt aaattgaata actagcttgt atgatatttg tttctgtgtt tgagtcattt
     1501 tgtattaaaa atccaaacag ataccttttt acaagaacct tgtggcttgg
//
