LOCUS       XM_039094809            1296 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus synuclein, gamma (Sncg), transcript
            variant X1, mRNA.
ACCESSION   XM_039094809
VERSION     XM_039094809.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039094809.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1296
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1296
                     /gene="Sncg"
                     /note="synuclein, gamma; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     mRNAs, 135 ESTs, 3 long SRA reads, 12 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 49 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:64347"
                     /db_xref="RGD:70996"
     CDS             639..1010
                     /gene="Sncg"
                     /codon_start=1
                     /product="gamma-synuclein isoform X1"
                     /protein_id="XP_038950737.1"
                     /db_xref="GeneID:64347"
                     /db_xref="RGD:70996"
                     /translation="MDVFKKGFSIAREGVVGAVEKTKQGVTEAAEKTKEGVMYVGTKT
                     KENVVQSVTSVAEKTKEQANAVSEAVVSSVNTVATKTVEEAENIVVTTGVVRKEDLEP
                     PAQDQEAKEQEEGEEAKSGGD"
ORIGIN      
        1 gccctgggcc tggagacaga gctgtggaac gtgttagctt cagaagatct ggtgccaccc
       61 acaccgttgg ccaggaagtg gggagccggc acaccagacc tgactcagca ccttccacac
      121 tgggctaagg gaaccagcag gtttgactgg cgagccaggc tcagaagcat ccagaataca
      181 gtgggtgact ggacaaccag ggccgtctgc aggttgatcg gtcactggat aggccctgac
      241 ccctgcacag cctaggacac cgaggcatca gccaaggccc tttccgtctg catacgagag
      301 ccatggcaca agaccaccag ggcttttcaa ggatgaacgg ggtgcagtga tggtttagga
      361 tatgtccagc ctcctacaag cactccctcc cccggggaca acagaagtcc gcagggcaga
      421 attgagccag taggggctgg gccctgctct ctgtgtcccc gtggggcatt cctttcctcc
      481 agcccgccct ccctgccccc accctgccct gggctggctg ggctccagcc agcagccaca
      541 gcatcaatat ttcatccccg tcaataagag gcagcggcag cagaggcagc cctccagttc
      601 gtagcttgca gcagccaggt ctcatcctca caaccaccat ggacgtcttc aagaaaggct
      661 tctccattgc cagggaaggc gttgtgggtg ctgtggagaa gaccaagcag ggggtgaccg
      721 aggcagctga gaagaccaag gaaggggtca tgtatgtggg caccaaaacc aaggagaacg
      781 tggtacaaag tgtaacctcg gtggctgaga agaccaagga gcaggccaat gccgtgagtg
      841 aagctgtggt cagcagcgtc aacacagtgg ccaccaagac cgtggaggag gcagaaaaca
      901 tcgtggtcac caccggcgta gtacgcaagg aggacttgga accccctgca caggaccagg
      961 aggccaaaga gcaagaggag ggcgaagagg ccaagagtgg aggagactag aaggcttcca
     1021 gtcaaccaca gaggctcaag ggacacctct ctgtcttgga ccctgtccca agctggcaca
     1081 ctgagtgccc tgcctagagt gccctgcagg ttgcccacat tctccactcc ctagcccagt
     1141 gccacaagcc tatccaagca cgcatgcacg ctactgacag cgccagcgcc ccctgctggc
     1201 tcattttacc ctatggtcct tcggatcacc aaccagacgc tgctgtgaat tttttctttt
     1261 tttaatgatt ccaaataaaa cctgagtcct aatcca
//
