LOCUS       NM_001108574            4367 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus small nuclear RNA activating complex, polypeptide
            4 (Snapc4), mRNA.
ACCESSION   NM_001108574 XM_001078364 XM_003749426 XM_342389
VERSION     NM_001108574.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4367)
  AUTHORS   Vannini,A.
  TITLE     A structural perspective on RNA polymerase I and RNA polymerase III
            transcription machineries
  JOURNAL   Biochim Biophys Acta 1829 (3-4), 258-264 (2013)
   PUBMED   23031840
  REMARK    Review article
REFERENCE   2  (bases 1 to 4367)
  AUTHORS   Ma,B. and Hernandez,N.
  TITLE     A map of protein-protein contacts within the small nuclear
            RNA-activating protein complex SNAPc
  JOURNAL   J Biol Chem 276 (7), 5027-5035 (2001)
   PUBMED   11056176
REFERENCE   3  (bases 1 to 4367)
  AUTHORS   Wong,M.W., Henry,R.W., Ma,B., Kobayashi,R., Klages,N., Matthias,P.,
            Strubin,M. and Hernandez,N.
  TITLE     The large subunit of basal transcription factor SNAPc is a Myb
            domain protein that interacts with Oct-1
  JOURNAL   Mol Cell Biol 18 (1), 368-377 (1998)
   PUBMED   9418884
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1 and BE097840.1.
            
            On or before Sep 3, 2019 this sequence version replaced
            XM_003749426.3, NM_001108574.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments. This RefSeq transcript is based on
            transcript alignments from orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643299.12883.1,
                                           SRR26643287.7356.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-59                JAXUCZ010000003.1  29597552-29597610   c
            60-202              JAXUCZ010000003.1  29595716-29595858   c
            203-249             JAXUCZ010000003.1  29595241-29595287   c
            250-417             JAXUCZ010000003.1  29594105-29594272   c
            418-543             JAXUCZ010000003.1  29593834-29593959   c
            544-622             JAXUCZ010000003.1  29593275-29593353   c
            623-704             JAXUCZ010000003.1  29592754-29592835   c
            705-809             JAXUCZ010000003.1  29592032-29592136   c
            810-882             JAXUCZ010000003.1  29591886-29591958   c
            883-1047            JAXUCZ010000003.1  29591374-29591538   c
            1048-1195           JAXUCZ010000003.1  29590722-29590869   c
            1196-1302           JAXUCZ010000003.1  29590376-29590482   c
            1303-1397           JAXUCZ010000003.1  29590133-29590227   c
            1398-1492           JAXUCZ010000003.1  29587862-29587956   c
            1493-1572           JAXUCZ010000003.1  29587078-29587157   c
            1573-2049           JAXUCZ010000003.1  29586375-29586851   c
            2050-2314           JAXUCZ010000003.1  29585419-29585683   c
            2315-2385           JAXUCZ010000003.1  29585051-29585121   c
            2386-2496           JAXUCZ010000003.1  29584486-29584596   c
            2497-2524           JAXUCZ010000003.1  29583743-29583770   c
            2525-3975           JAXUCZ010000003.1  29581915-29583365   c
            3976-4106           JAXUCZ010000003.1  29580948-29581078   c
            4107-4351           JAXUCZ010000003.1  29580158-29580402   c
            4352-4367           BE097840.1         1-16                c
FEATURES             Location/Qualifiers
     source          1..4367
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p13"
     gene            1..4367
                     /gene="Snapc4"
                     /note="small nuclear RNA activating complex, polypeptide
                     4"
                     /db_xref="GeneID:362088"
                     /db_xref="RGD:1309048"
     exon            1..59
                     /gene="Snapc4"
                     /inference="alignment:Splign:2.1.0"
     exon            60..202
                     /gene="Snapc4"
                     /inference="alignment:Splign:2.1.0"
     CDS             73..4086
                     /gene="Snapc4"
                     /codon_start=1
                     /product="snRNA-activating protein complex subunit 4"
                     /protein_id="NP_001102044.2"
                     /db_xref="GeneID:362088"
                     /db_xref="RGD:1309048"
                     /translation="MDIDAEREKVTQEIQELERILYPGSSSVHFEVSESSLSSDSEAD
                     PLPDEDLETAGAPVLEEERSSEGSNDDEDPKDKALPEDPETCLQLNMVYQEVIREKLA
                     EVSQLLAQNQEQQEEILFDLAGTKCPKVKDAKSLPSYMYIGHFLKPYFKDKVTGVGPP
                     ANEETREKAAQGIKAFEQLLVTKWKHWEKDLLRKSVVSDRLQRLLQPKLLKLEYLQEK
                     QSRVSSELEKQALEKQIKEAEKEIQDINQLPEEALLGNRLDSHDWEKISNVNFEGARS
                     AEEIRKFWQSSEHPSINKKEWSTEEVERLKTIAASHGHLEWHLVAEELGTSRSAFQCL
                     QKFQQYNKALKRKEWTEEEDHMLTQLVQEMRVGNHIPYRRIVYFMEGRDSMQLIYRWT
                     KSLDPSLKRGFWAPEEDAKLLQAVAKYGAQDWFKIREEVPGRSDAQCRDRYIRRLHFS
                     LKKGRWDAKEEQQLIQLIEKYGVGHWARIASELPHRSGSQCLSKWKILARKKQHLQKR
                     RGQRSRHSSQWSSCSSSSSSSSSSSGSEDYGGGSSSSSNSSEDSEVELEEPLQNSRAL
                     APQQYSVPDIDLWVPTRLIDSRSQREETGCYPVHPAVSCRTQNHHKEGSTVVSAPERN
                     QMQECCETHSTVPRGVQSLHSSDTHGASVKEPACKSHTLVKERRRQPPLPNSRSGSDP
                     GNSMAGPHLRRLWHGTFQNKQRRKRQALHRRLLKHRLLLAVIPWVGDINLACTQAVQR
                     PAAVQTQADSIRMQLECARLASTPVFTLFIQLLQIDTAGCMEVVQERKTQPPALLQPG
                     TRNTQPHLLQASSNAKNNTGCLLPGMLDEQTAKRTSQKGRPRLGSCKAEATPFQVPVA
                     APRGLRPKPKTVSELLREKRLRESHAKKATQALTALSSQLLVSSPVLLQPPLLPAARG
                     SPVVGPAASSVELSVPVAPVMVSSSPSGSWQVGGISATDKQPPNLQTIPLNPSHKGTQ
                     IAAPAAFRSLALASGHVSTGCPLNTLGQTSTTSQKQSLPKVLPILPAAPSLTQLSVQP
                     LSLPPVLNPPASGQPPATKSSLPVSWVLTTQKLLSVQVPAVVGLPQPVTTPETIGLQA
                     KQLPSPSKTPAFLGQPPASTDTEPKGPQGQQTPPTPGPEKKALDLSLLSQESEAAILT
                     WLTGSQGACVPPLGSRMSYHPPSLCSLRALSSLLLHKKDLEQKASSLVAGQAAGAQPE
                     PKAGALQASLELVQRQFQNNPAYLLLKTRFLAIFSLPAFLATLPPNSVPTTLSPAMAV
                     GSESDSEDFGDLEPRDGATQLDCMACRVRANLMAPDPVQRAPSPSAVSAPSHLDASDD
                     LDDLDVLRTRHARHSRK"
     exon            203..249
                     /gene="Snapc4"
                     /inference="alignment:Splign:2.1.0"
     exon            250..417
                     /gene="Snapc4"
                     /inference="alignment:Splign:2.1.0"
     exon            418..543
                     /gene="Snapc4"
                     /inference="alignment:Splign:2.1.0"
     exon            544..622
                     /gene="Snapc4"
                     /inference="alignment:Splign:2.1.0"
     exon            623..704
                     /gene="Snapc4"
                     /inference="alignment:Splign:2.1.0"
     exon            705..809
                     /gene="Snapc4"
                     /inference="alignment:Splign:2.1.0"
     exon            810..882
                     /gene="Snapc4"
                     /inference="alignment:Splign:2.1.0"
     exon            883..1047
                     /gene="Snapc4"
                     /inference="alignment:Splign:2.1.0"
     exon            1048..1195
                     /gene="Snapc4"
                     /inference="alignment:Splign:2.1.0"
     exon            1196..1302
                     /gene="Snapc4"
                     /inference="alignment:Splign:2.1.0"
     exon            1303..1397
                     /gene="Snapc4"
                     /inference="alignment:Splign:2.1.0"
     exon            1398..1492
                     /gene="Snapc4"
                     /inference="alignment:Splign:2.1.0"
     exon            1493..1572
                     /gene="Snapc4"
                     /inference="alignment:Splign:2.1.0"
     exon            1573..2049
                     /gene="Snapc4"
                     /inference="alignment:Splign:2.1.0"
     exon            2050..2314
                     /gene="Snapc4"
                     /inference="alignment:Splign:2.1.0"
     exon            2315..2385
                     /gene="Snapc4"
                     /inference="alignment:Splign:2.1.0"
     exon            2386..2496
                     /gene="Snapc4"
                     /inference="alignment:Splign:2.1.0"
     exon            2497..2524
                     /gene="Snapc4"
                     /inference="alignment:Splign:2.1.0"
     exon            2525..3975
                     /gene="Snapc4"
                     /inference="alignment:Splign:2.1.0"
     exon            3976..4106
                     /gene="Snapc4"
                     /inference="alignment:Splign:2.1.0"
     exon            4107..4352
                     /gene="Snapc4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgcgtgtggt cgcctgggcg acgaagctgg cactgaattg tagaagggag gcctagcagg
       61 caggccgaag ccatggacat agatgccgaa cgagagaagg taacacagga gatccaggag
      121 ctcgaaagga ttctgtatcc tggatcctcc agcgtccact ttgaggtctc tgaatccagt
      181 ctcagttcgg actctgaagc agatcctctg cctgatgagg acttggagac tgccggtgcc
      241 cccgtcttgg aagaagaaag gtcaagcgag ggcagcaatg atgacgagga ccccaaggac
      301 aaagctcttc ctgaagaccc cgagacctgt ctgcagctaa atatggtcta ccaggaggtg
      361 atccgggaaa agctagcaga ggttagccag ttgctagccc agaaccagga gcagcaggag
      421 gagatcctgt ttgatttggc tgggaccaag tgccccaaag tgaaggacgc caaaagcctg
      481 ccctcataca tgtacatagg ccacttcctg aagccatact tcaaggacaa ggtcactgga
      541 gtggggcctc ctgccaacga agaaactcgg gagaaggctg cccagggaat caaggccttt
      601 gaacagctct tggtgactaa gtggaagcac tgggagaaag acttgctccg gaagtctgta
      661 gtgagtgacc gcctgcaacg cctgcttcag cccaagttac tgaagcttga gtacttacaa
      721 gaaaaacaga gccgagtctc cagtgagttg gaaaagcagg ccctggagaa gcagattaag
      781 gaagcagaga aggaaattca ggacatcaac cagctcccag aggaagcttt gttggggaac
      841 cggctggaca gccacgactg ggagaagatt tccaatgtta actttgaagg agcccgcagc
      901 gcagaagaga tccggaagtt ctggcagagc tctgagcatc caagcatcaa taagaaggag
      961 tggagcacag aggaagtaga gaggctaaag accatcgctg cctcacacgg ccacctcgag
     1021 tggcacttgg ttgcagagga actcgggacg agccgcagtg ccttccagtg tctgcagaaa
     1081 ttccagcagt acaacaaagc cctgaaacgc aaggagtgga cagaagagga agaccacatg
     1141 ctcacccagc tggtccaaga gatgcgtgtt ggaaaccata tcccataccg caggattgtc
     1201 tacttcatgg aagggagaga ctccatgcag ctgatctacc gttggaccaa gagcttagat
     1261 cccagcctga aaaggggatt ctgggcccca gaggaagatg ctaaattgct tcaagctgtt
     1321 gccaagtatg gggcgcagga ctggtttaaa atccgggaag aggtgccagg taggagcgat
     1381 gcccagtgca gagaccgcta catcagaaga ttacatttca gtttgaagaa gggacggtgg
     1441 gatgcaaaag aagaacaaca gctgatccag ttaatagaaa aatatggcgt cggtcactgg
     1501 gcaagaatag cttctgaact gccccatcgg tcaggctccc agtgtctgag caagtggaaa
     1561 atcttggcca ggaaaaaaca gcatctccag aagaggcgag ggcagaggtc ccgtcacagt
     1621 agccagtgga gttcctgtag cagcagcagc agcagcagca gcagcagcag tggcagtgag
     1681 gactatggcg gtggcagcag cagcagcagc aacagcagtg aagactcaga ggtagaactg
     1741 gaggagcctt tgcagaatag cagagcattg gctcctcaac agtacagcgt gccagacatc
     1801 gacctgtggg ttcctaccag actgatcgac agccggtcac agagagagga gacagggtgc
     1861 tacccagtac accctgctgt ctcctgccgt actcaaaatc accacaagga aggttctacc
     1921 gtagtctctg ctcctgagag aaaccagatg caggagtgct gtgagaccca cagcactgtt
     1981 cccagaggag tccagtccct gcactcctca gacactcacg gagcaagtgt gaaggagcca
     2041 gcctgcaaga gccacacact ggtgaaggaa agacggaggc agccacctct gcctaattca
     2101 cgctcagggt ctgaccctgg taacagtatg gctgggcccc atctacggcg gctgtggcat
     2161 ggaactttcc agaataagca gagacgcaag agacaggctc tacatcgaag gctcctgaag
     2221 cacaggctcc tgctggctgt gataccctgg gtgggtgaca tcaacctggc ttgcacacaa
     2281 gctgtccaga gacctgcagc tgtacagact caagctgaca gcatcaggat gcagctggag
     2341 tgtgcacgcc tggccagcac tccagtgttc acattgttta ttcagctgtt gcagattgat
     2401 actgcgggct gcatggaggt ggttcaagag aggaaaaccc agccacctgc actgctccag
     2461 cctggcaccc ggaacaccca gccacatctc ctgcaggcgt cctctaatgc caagaacaac
     2521 acaggctgcc ttcttccagg catgctggat gagcaaactg caaagagaac cagccagaaa
     2581 gggcgtccac ggctggggtc ctgcaaggca gaggctactc ccttccaagt tcctgtggca
     2641 gccccacgtg gcctccggcc aaagcctaag actgtatctg agctgctgag ggagaagcgg
     2701 ctccgtgagt cccatgccaa gaaggccact caggctctca ctgccctcag cagccagctg
     2761 ctggtctcct cacctgtgct cctccagccc cctctgctgc cagctgcccg cggttcccca
     2821 gtcgtgggcc ctgcagcatc cagtgtagaa ctctctgtac ctgtggcccc agtgatggtc
     2881 agttcaagtc cttctggctc ctggcaggtc ggtgggatct cagccacaga caaacagccc
     2941 cccaacctac aaaccattcc cctaaatccc tcccacaaag ggacccagat tgcagcccct
     3001 gctgctttta ggagcctagc cttagcctct gggcacgtct ccacaggctg ccccctgaat
     3061 actctaggac aaacctctac cacatcccag aagcagagcc tgcccaaggt cctgcccatt
     3121 ctcccagcag cccccagcct cactcagctg tctgtgcaac ccctcagtct gccaccagtt
     3181 cttaacccac ctgcaagtgg gcagcccccg gcaaccaagt ccagcctgcc tgttagctgg
     3241 gttctcacaa ctcagaagct gctctctgtc caagtgccag ccgtggtggg cctcccccag
     3301 ccagtgacga cccctgagac cataggacta caagcgaaac agctaccttc cccttccaag
     3361 actcctgctt ttctgggaca gcctccagct agcacagaca cagaacccaa aggacctcag
     3421 ggccagcaga caccacccac acctgggcct gaaaagaagg ctttggactt aagcctgctt
     3481 tcccaggaaa gtgaggcggc catcttgaca tggctgacgg ggagccaagg tgcttgtgtg
     3541 cccccactgg gaagcaggat gtcctatcac cccccttccc tgtgcagctt gcgagcactg
     3601 tccagcctcc tcctccataa aaaggacttg gagcagaagg cttcctctct ggtggccggc
     3661 caggcagctg gggcccaacc tgagcccaag gctggagccc tacaagcttc cctggagctg
     3721 gtacagaggc aattccagaa caacccagcc tacctcctgc taaagactcg tttcctggcc
     3781 atcttctccc ttcctgcatt cctggccact ctgcccccca acagtgttcc taccacccta
     3841 tcaccagcca tggctgtggg ttctgagagt gacagtgaag actttggtga cctggagccg
     3901 agggacgggg ctacgcagct ggactgcatg gcctgcagag tgcgagcaaa cctgatggcc
     3961 ccagaccctg tgcagagagc tccaagtccc agtgcagtgt ctgctccctc ccacctggat
     4021 gcttctgatg acctcgatga ccttgacgtg ctcaggactc gtcatgctcg gcattcccgg
     4081 aaatagaggt tgctctgagc agcaaggaca aggactcaag ggatccagaa acccaggctt
     4141 ataccaggca agaggcaggg cccaagcctg accagaagcc cacagccctc tgcaagaaga
     4201 cgggaggcca gaaagctgca gactaagctg tgcagcagca gcagcagctg tgggatagca
     4261 gtggtcatgt gatcacaggc ttaactgtta gcaaacgccg atccacatgt gtgaaggaat
     4321 aaagtaatgc ccgtttctca cttccaaagc aaaaaaaaaa aaaaaaa
//
