LOCUS       NM_199389               1822 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus synaptosome associated protein 47 (Snap47), mRNA.
ACCESSION   NM_199389 XM_220560
VERSION     NM_199389.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1822)
  AUTHORS   Munster-Wandowski,A., Heilmann,H., Bolduan,F., Trimbuch,T.,
            Yanagawa,Y. and Vida,I.
  TITLE     Distinct Localization of SNAP47 Protein in GABAergic and
            Glutamatergic Neurons in the Mouse and the Rat Hippocampus
  JOURNAL   Front Neuroanat 11, 56 (2017)
   PUBMED   28751858
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1822)
  AUTHORS   Jurado,S., Goswami,D., Zhang,Y., Molina,A.J., Sudhof,T.C. and
            Malenka,R.C.
  TITLE     LTP requires a unique postsynaptic SNARE fusion machinery
  JOURNAL   Neuron 77 (3), 542-558 (2013)
   PUBMED   23395379
REFERENCE   3  (bases 1 to 1822)
  AUTHORS   Ghiani,C.A., Starcevic,M., Rodriguez-Fernandez,I.A., Nazarian,R.,
            Cheli,V.T., Chan,L.N., Malvar,J.S., de Vellis,J., Sabatti,C. and
            Dell'Angelica,E.C.
  TITLE     The dysbindin-containing complex (BLOC-1) in brain: developmental
            regulation, interaction with SNARE proteins and role in neurite
            outgrowth
  JOURNAL   Mol Psychiatry 15 (2), 115 (2010)
   PUBMED   19546860
REFERENCE   4  (bases 1 to 1822)
  AUTHORS   Holt,M., Varoqueaux,F., Wiederhold,K., Takamori,S., Urlaub,H.,
            Fasshauer,D. and Jahn,R.
  TITLE     Identification of SNAP-47, a novel Qbc-SNARE with ubiquitous
            expression
  JOURNAL   J Biol Chem 281 (25), 17076-17083 (2006)
   PUBMED   16621800
  REMARK    GeneRIF: SNAP-47, a novel Qbc-SNARE with ubiquitous expression
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC062056.1.
            
            On Jan 12, 2004 this sequence version replaced XM_220560.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC062056.1, SRR8487231.37868.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1822
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q22"
     gene            1..1822
                     /gene="Snap47"
                     /gene_synonym="RGD735194; SNAP-47"
                     /note="synaptosome associated protein 47"
                     /db_xref="GeneID:303183"
                     /db_xref="RGD:735194"
     exon            1..83
                     /gene="Snap47"
                     /gene_synonym="RGD735194; SNAP-47"
                     /inference="alignment:Splign:2.1.0"
     exon            84..625
                     /gene="Snap47"
                     /gene_synonym="RGD735194; SNAP-47"
                     /inference="alignment:Splign:2.1.0"
     CDS             129..1388
                     /gene="Snap47"
                     /gene_synonym="RGD735194; SNAP-47"
                     /note="synaptosomal-associated 47 kDa protein;
                     synaptosomal-associated protein, 47"
                     /codon_start=1
                     /product="synaptosomal-associated protein 47"
                     /protein_id="NP_955421.1"
                     /db_xref="GeneID:303183"
                     /db_xref="RGD:735194"
                     /translation="MSSDVRVHTWPCSYYLDLEKQWLPGKLTLTPRSLKFSVDKAEEV
                     LVGLPLSSITEIRKETSLFIFSAITVLEKGQAKHWFSSLRPSRNVVFNIIEHFWRELL
                     LSQPGTAANPTSPMTRGQELMGLMASSQRRMEDTAKVLHHQGEQLDSVMRGLEKMESD
                     LDVADRLLTELETPSWWPFSAKFWKTPVEAKPRDSVSVAPCEPFGKEGVVIRVPAVVS
                     QRTESHSKPGKLTVLVSGLEIHDSSSLLLHRFEKEDVDDIKVHSPYEVSIRQRFIGKP
                     DVAYRLISAKMPEVIPILEVQFSKKIELLEDALVLRSRGRASPAEGGCSIRHAASRLM
                     GCTTHQELPTGGQEGQQSQLQKDWPLLSEGEAQELTQILSKLKGLALDTEAELERQDA
                     ALDGITVAVDRATLTVDKHNRRMRKLL"
     exon            626..1116
                     /gene="Snap47"
                     /gene_synonym="RGD735194; SNAP-47"
                     /inference="alignment:Splign:2.1.0"
     exon            1117..1241
                     /gene="Snap47"
                     /gene_synonym="RGD735194; SNAP-47"
                     /inference="alignment:Splign:2.1.0"
     exon            1242..1769
                     /gene="Snap47"
                     /gene_synonym="RGD735194; SNAP-47"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccggctcttc agcagctggc gtctctgttt ggtggtccag tggagcgtgc cagtgtgtct
       61 tctgcgcgct cctgttgcct cagaagcagt tactacagcc ttggtgtagc acagccacct
      121 aggaacagat gagcagtgat gtacgagttc acacctggcc ttgttcctac tatctggacc
      181 ttgagaagca atggcttcct ggaaaactga ccttgacacc tcgttcactg aagttcagtg
      241 tggacaaagc tgaagaggtc cttgttggcc tgcccctttc tagcatcact gagatcagga
      301 aagagacatc gctctttatc ttcagtgcga tcacagtcct ggagaagggc caggccaagc
      361 actggttcag ctcactgcgg cctagtcgaa atgtggtctt caacatcatc gagcatttct
      421 ggagggagct gctactgtcc cagccaggca ctgctgccaa tccaacctcc cccatgacca
      481 gggggcagga gctgatggga ctgatggcga gttcccagag acgcatggaa gacacagcaa
      541 aggtccttca ccaccagggc gagcagctag acagtgtcat gaggggcctg gagaagatgg
      601 agtccgatct agatgtggct gacagattgc tgacagagtt ggagactcct tcctggtggc
      661 cttttagtgc taagttttgg aagacgccag tggaagccaa gcccagggac agtgtctctg
      721 tagccccttg tgagcccttt ggaaaggaag gggttgtgat cagggtccct gctgttgttt
      781 ctcagagaac agagtctcat tccaagccag gaaaactcac tgtcctggtc tccggtttgg
      841 aaatccatga ctccagttca ttgctcctgc acagatttga gaaggaagat gttgatgata
      901 tcaaggttca ctctccttat gaggtcagca tacgccagcg gttcatcggc aagccagacg
      961 tggcttaccg gctgatatct gccaagatgc cagaggtcat tcccatttta gaagtgcagt
     1021 tcagcaagaa gattgagctc ctggaagacg ccctggtgct caggagcagg ggccgtgctt
     1081 cgcctgccga gggcggctgc tccattcggc atgcagcatc cagactgatg ggctgcacta
     1141 cacaccaaga gctgcccaca ggaggacagg aaggccagca gtcgcagctg cagaaggact
     1201 ggccactact ctctgagggg gaagcccagg agctgacaca gatcctgagc aaactgaagg
     1261 gcctcgcact ggacaccgag gcagagctgg aacgccagga tgcagctctg gatggcatca
     1321 ccgtagctgt ggaccgggca accctgactg tggacaagca taaccgtcgt atgagaaagc
     1381 tgttgtagtg gggcaggctg cagaacactg cgcctgcatg ctctgctgag cctgctgctg
     1441 ttagccctgt gtcctttgca ctgagacctg ggaagccatt ctgggtgctg tggaactatg
     1501 aggccctacc tgggaactac atcttccttg gatgggccgg gagaagccac aacatgcatg
     1561 agcatgatat gttttccagg tgcccttagc atgagggcca agtcctgttc aggcaagaat
     1621 ggctaccaca gcatagtcat cccttcctgt caaaactgag accacagcac tgagctgcca
     1681 ttgtggggcc aaggccctgg ttaccttgca caagtcacat catactgtca tttttgccaa
     1741 gcagtaaaga aaaatgtcag tcattctgaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     1801 aaaaaaaaaa aaaaaaaaaa aa
//
