LOCUS       NM_053810               3425 bp    mRNA    linear   ROD 19-SEP-2024
DEFINITION  Rattus norvegicus synaptosome associated protein 29 (Snap29), mRNA.
ACCESSION   NM_053810
VERSION     NM_053810.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3425)
  AUTHORS   Morgenstern,M., Peikert,C.D., Lubbert,P., Suppanz,I., Klemm,C.,
            Alka,O., Steiert,C., Naumenko,N., Schendzielorz,A., Melchionda,L.,
            Muhlhauser,W.W.D., Knapp,B., Busch,J.D., Stiller,S.B.,
            Dannenmaier,S., Lindau,C., Licheva,M., Eickhorst,C., Galbusera,R.,
            Zerbes,R.M., Ryan,M.T., Kraft,C., Kozjak-Pavlovic,V., Drepper,F.,
            Dennerlein,S., Oeljeklaus,S., Pfanner,N., Wiedemann,N. and
            Warscheid,B.
  TITLE     Quantitative high-confidence human mitochondrial proteome and its
            dynamics in cellular context
  JOURNAL   Cell Metab 33 (12), 2464-2483 (2021)
   PUBMED   34800366
REFERENCE   2  (bases 1 to 3425)
  AUTHORS   Yan,W., Fan,J., Zhang,X., Song,H., Wan,R., Wang,W. and Yin,Y.
  TITLE     Decreased neuronal synaptosome associated protein 29 contributes to
            poststroke cognitive impairment by disrupting presynaptic
            maintenance
  JOURNAL   Theranostics 11 (10), 4616-4636 (2021)
   PUBMED   33754017
  REMARK    GeneRIF: Decreased neuronal synaptosome associated protein 29
            contributes to poststroke cognitive impairment by disrupting
            presynaptic maintenance.
            Publication Status: Online-Only
REFERENCE   3  (bases 1 to 3425)
  AUTHORS   Hubert,V., Peschel,A., Langer,B., Groger,M., Rees,A. and Kain,R.
  TITLE     LAMP-2 is required for incorporating syntaxin-17 into
            autophagosomes and for their fusion with lysosomes
  JOURNAL   Biol Open 5 (10), 1516-1529 (2016)
   PUBMED   27628032
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 3425)
  AUTHORS   Topalidou,I., Cattin-Ortola,J., Pappas,A.L., Cooper,K.,
            Merrihew,G.E., MacCoss,M.J. and Ailion,M.
  TITLE     The EARP Complex and Its Interactor EIPR-1 Are Required for Cargo
            Sorting to Dense-Core Vesicles
  JOURNAL   PLoS Genet 12 (5), e1006074 (2016)
   PUBMED   27191843
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 3425)
  AUTHORS   Diao,J., Liu,R., Rong,Y., Zhao,M., Zhang,J., Lai,Y., Zhou,Q.,
            Wilz,L.M., Li,J., Vivona,S., Pfuetzner,R.A., Brunger,A.T. and
            Zhong,Q.
  TITLE     ATG14 promotes membrane tethering and fusion of autophagosomes to
            endolysosomes
  JOURNAL   Nature 520 (7548), 563-566 (2015)
   PUBMED   25686604
REFERENCE   6  (bases 1 to 3425)
  AUTHORS   Xu,Y., Shi,H., Wei,S., Wong,S.H. and Hong,W.
  TITLE     Mutually exclusive interactions of EHD1 with GS32 and syndapin II
  JOURNAL   Mol Membr Biol 21 (4), 269-277 (2004)
   PUBMED   15371016
  REMARK    GeneRIF: EHD1 may regulate/participate in the functional pathways
            of both GS32 and syndapin II in a mutual exclusive manner
REFERENCE   7  (bases 1 to 3425)
  AUTHORS   Su,Q., Mochida,S., Tian,J.H., Mehta,R. and Sheng,Z.H.
  TITLE     SNAP-29: a general SNARE protein that inhibits SNARE disassembly
            and is implicated in synaptic transmission
  JOURNAL   Proc Natl Acad Sci U S A 98 (24), 14038-14043 (2001)
   PUBMED   11707603
REFERENCE   8  (bases 1 to 3425)
  AUTHORS   Rotem-Yehudar,R., Galperin,E. and Horowitz,M.
  TITLE     Association of insulin-like growth factor 1 receptor with EHD1 and
            SNAP29
  JOURNAL   J Biol Chem 276 (35), 33054-33060 (2001)
   PUBMED   11423532
REFERENCE   9  (bases 1 to 3425)
  AUTHORS   Pabst,S., Hazzard,J.W., Antonin,W., Sudhof,T.C., Jahn,R., Rizo,J.
            and Fasshauer,D.
  TITLE     Selective interaction of complexin with the neuronal SNARE complex.
            Determination of the binding regions
  JOURNAL   J Biol Chem 275 (26), 19808-19818 (2000)
   PUBMED   10777504
REFERENCE   10 (bases 1 to 3425)
  AUTHORS   Wong,S.H., Xu,Y., Zhang,T., Griffiths,G., Lowe,S.L.,
            Subramaniam,V.N., Seow,K.T. and Hong,W.
  TITLE     GS32, a novel Golgi SNARE of 32 kDa, interacts preferentially with
            syntaxin 6
  JOURNAL   Mol Biol Cell 10 (1), 119-134 (1999)
   PUBMED   9880331
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC091693.1.
            
            On Apr 20, 2005 this sequence version replaced NM_053810.2.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC091693.1, AF035822.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840129, SAMN16676788
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3425
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /map="11q23"
     gene            1..3425
                     /gene="Snap29"
                     /gene_synonym="Gs32"
                     /note="synaptosome associated protein 29"
                     /db_xref="GeneID:116500"
                     /db_xref="RGD:620225"
     exon            1..314
                     /gene="Snap29"
                     /gene_synonym="Gs32"
                     /inference="alignment:Splign:2.1.0"
     CDS             78..851
                     /gene="Snap29"
                     /gene_synonym="Gs32"
                     /note="SNAP-29; golgi SNARE of 32 kDa; soluble 29 kDa NSF
                     attachment protein; vesicle-membrane fusion protein
                     SNAP-29; synaptosomal-associated protein, 29kD"
                     /codon_start=1
                     /product="synaptosomal-associated protein 29"
                     /protein_id="NP_446262.3"
                     /db_xref="GeneID:116500"
                     /db_xref="RGD:620225"
                     /translation="MSGYPKSYNPFDDDVEDEDTRPAPWKDARDLPDGPDAPIDRQQY
                     LRQEVLRRAEATAASTSRSLSLMYESEKIGVASSEELVRQRGVLEHTEKMVDKMDQDL
                     KMSQKHINSIKSVFGGFINYFKSKPVEPPPEQNGSIVPQPSSRLKEAINTSKDQESKY
                     QASHPNLRRLHDAELDSVPASTVNTEVYPKNSSLRAYHQKIDSNLDELSVGLGRLKDI
                     ALGMQTEIEEQDDILDRLTTKVDKLDVNIKSTEKKVRQL"
     exon            315..511
                     /gene="Snap29"
                     /gene_synonym="Gs32"
                     /inference="alignment:Splign:2.1.0"
     exon            512..597
                     /gene="Snap29"
                     /gene_synonym="Gs32"
                     /inference="alignment:Splign:2.1.0"
     exon            598..693
                     /gene="Snap29"
                     /gene_synonym="Gs32"
                     /inference="alignment:Splign:2.1.0"
     exon            694..3400
                     /gene="Snap29"
                     /gene_synonym="Gs32"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgccggccgg cgctgggcta ccgactcctc gctcagctgc ccttcctgct tccaaggttc
       61 aggccgtcgc cggcaccatg tctggctatc ctaaaagcta taatcctttc gacgatgatg
      121 tggaagacga ggacacccgg ccggcgccgt ggaaggacgc ccgcgacctg cccgacggcc
      181 ccgacgcgcc tattgacagg cagcagtacc tgagacaaga ggtgttacgc agggccgagg
      241 ctactgctgc cagcaccagc aggtccttgt ccctcatgta tgaatcggag aagatcggag
      301 tcgcctcttc agaggagctg gtccggcagc gaggagtcct agaacacacg gagaagatgg
      361 tggacaagat ggatcaggac ttgaagatga gccagaaaca tatcaacagc atcaagagtg
      421 tgtttggagg attcatcaac tacttcaaat ccaaaccagt agagcctcca cctgagcaga
      481 atggcagcat cgtcccccag cccagcagca gattgaaaga agccataaat acaagtaaag
      541 atcaggaaag caagtaccaa gccagccacc caaacctcag aaggctacat gatgcagaac
      601 tagactctgt ccctgcttct actgtgaata ctgaggttta cccaaagaac tcaagcctta
      661 gagcttatca ccagaagatt gacagcaacc tagatgagct gtctgtggga ttgggccgcc
      721 taaaggacat agccttagga atgcagacgg aaatcgagga gcaggatgac atccttgacc
      781 ggctaacaac caaagtggac aagttagatg tcaatataaa aagcacagaa aaaaaggtgc
      841 ggcaactcta gagacacgaa gacgctctgc tccgtcctga tgagaagagt cataatccgt
      901 taaactctta tggatgtcac ttagtatgta atgtaacacg ttttcaaatg tgggtctttg
      961 aaattttagt atcaatgggg aaaaaatgta tcttccacat tttggtaaga tcaacaaagt
     1021 tctgtgagct gtctgctgag ttttagtcta agcagagaat tatgaacacc ttgagccttt
     1081 ggttactgtg ctggaaggag agaaggcact gcgtttctaa tttcacgagt gtctgcagag
     1141 ctgtgggcag agtgttggta agcactgcct ttcacttacc cattagttat gtttctcact
     1201 ctgaggcctt actgtgaatt cagatgtgaa gggaccctgg gtttgtggca gaaggaaggg
     1261 tccctccaca tcttcatatg tcaagtcttg tggacatgcc tgcacacaaa ctgagcacat
     1321 ggtagctctc tccccatgaa aaggatccat gttctgtaca gaactgaaat gtgttgcctt
     1381 cattgtccca acccccatct tctgttctcg tcctgcactt tagcagaagg actcagagca
     1441 ggattgctag acatgacacc tgggagggag cgtgtgagaa cagacgtgcc cttcttccca
     1501 ccggttctca cctcactctt tccatctctg gtggggactt tctccaccgg ctcaaagcca
     1561 acttgtcggt tggtttgtgt gcatggagta ttacttaaaa acctcgacac tgagccctgt
     1621 gcctctggga atagaaccaa aggccgtgtt tatttggtgc ctggagtctc ctcatccatc
     1681 ccagagaccc acgcagtctc catttctaca aagtgctcca cctagtttta ggacttagac
     1741 cccacaaatg atgctcacct ctgtctgtca gatgattgga ccaagaggcc ggagactctc
     1801 ttagctagct agtgtttgct cccttcagtt tccaaaagaa aatatttaga agcattaatt
     1861 aaaactgatt cctgcaagaa atttcccttg tgttggtact gccagtagag ttactaaagc
     1921 cacggaacac ctgactatat taaaatcaaa gtcacgcatt ttgaagaagg taaaggggac
     1981 tttttaacta gtaagatatg tcagaatcta aaatgccagt gccttcttgc cttaaaacat
     2041 ggctcttgtg ctgcttgggg atccttcctt cagcatttgg agtctgtagt cttaaagcaa
     2101 agcacgcagt ggggctaggg gtgcagctca gtggtcaatt atctaccttc tctcctgggg
     2161 cctggggttg gtctccacgg ttggggagag gatcagaaga tggggtatca ggactattac
     2221 tgttcatgta gcaacatgaa ctcactcttg tcccaaaata tccaaccttc ctgaaaatac
     2281 agcagccaca ggcagaaagg gcccaaacgt aaagatctga ctgaagtgga cctctgtgag
     2341 ttccaggcca gccaagacaa tatattcaga cctgtctcaa acaatgtaga gagagaccaa
     2401 tccatatgta tctccactcc taattgttta ttggtgtttt ttttttctat gaaaccttct
     2461 catgttctaa taactgttcc tctttatcac catcaggcat agccttgtag aaattaacaa
     2521 tcccaagaaa tgaacacacg aggatgcctt ccatgggcat cctagtggga atcagctgac
     2581 tgaggctaag ggacatttta tgaacctttc tttgttttgc taaatgaatg aagccaatcg
     2641 ctcctttccc agtctttctt tactccatga atgtgaaact gtgaaaccgt gttcctgtaa
     2701 accattagag gtccttgtcc attttgtcct gttcctcaga ctctgtggtc ctctgaagtt
     2761 gtctgttggc ctgctggaga ctggctggag caggtgctgc cttataaagc agggtcgttt
     2821 gcacatcaca gacaacaaag gacttgggga agctccagaa ccaggtctgc tggctgacac
     2881 tctaatcaca gcacttaggc caaggtggaa gggtggctat gagttccagg ttcagggtaa
     2941 gatcttgtct caagagaatc agtgactgtg gatggtggga gaggaaggaa agactcactc
     3001 ctgctctctg gcctagcaag ggttagtgct ggggaggtgg caagcatgag tggagtggac
     3061 agaccagtga gctacttgcc atgcgaggtc tgcaagacag cctgagacac cccgccttca
     3121 gagaggcggc atttgtaacc ttaggttagc tgtgtgctac gtgtaccacc aaaacaagtg
     3181 cactgtcctc cagagaagac taacagctac tgacctgtaa ctcaccagca ttggagtgac
     3241 ctcgtcaatt ggttttcctc gttctgtagg agaggcctga agttcattca tgtaacaagt
     3301 agaacaaaag atcagagcat ctttatttcc ccttctcttc ttataactgt gcaattttaa
     3361 atgtataatg tatcacttca gtaaaaaaaa aaaaattcta aaaaaaaaaa aaaaaaaaaa
     3421 aaaaa
//
