LOCUS       NM_001107870            2192 bp    mRNA    linear   ROD 18-JUN-2023
DEFINITION  Rattus norvegicus SMYD family member 5 (Smyd5), mRNA.
ACCESSION   NM_001107870 XM_001073891 XM_232134
VERSION     NM_001107870.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2192)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473957.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001073891.1, XM_232134.4.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132263,
                              SAMD00132266 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2192
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q34"
     gene            1..2192
                     /gene="Smyd5"
                     /note="SMYD family member 5"
                     /db_xref="GeneID:312503"
                     /db_xref="RGD:1309153"
     exon            1..116
                     /gene="Smyd5"
                     /inference="alignment:Splign:2.1.0"
     CDS             21..1274
                     /gene="Smyd5"
                     /EC_number="2.1.1.372"
                     /note="SET and MYND domain-containing protein 5; SET and
                     MYND domain containing 5"
                     /codon_start=1
                     /product="histone-lysine N-trimethyltransferase SMYD5"
                     /protein_id="NP_001101340.1"
                     /db_xref="GeneID:312503"
                     /db_xref="RGD:1309153"
                     /translation="MAASMCDVFSFCVGVAGGARGSVEVRFVSSAKGKGLFATQLIRK
                     GETIFIERPLVASQFLWNALYRYRACDHCLRALEKAEENAQRLTGKPGQVLPHPELCS
                     VRKDLHQNCPRCQVTYCSAECRLAAAEQYHQILCPGPSQDDPRHPLNKLQEAWRSVHY
                     PPETASIMLMARMVATVKQAKDKDHWVRLFSHFCSKTANEEEEIVHKLLGDKFKGQLE
                     LLRRLFTEALYEETLSQWFTPDGFRSLFALVGTNGQGIGTSSLSQWVHACDALELKPQ
                     EREQLDTFIDQLYKDIEAATGEFLNCEGSGLFVLQSCCNHSCVPNAETSFPENNFLLH
                     VTALEDIEPGEEICISYLDCCQRERSRHSRHKILRENYLFVCSCPKCLAEADDPNVTS
                     EEEEEEDEEEGEPEDAELGDEMTDV"
     exon            117..225
                     /gene="Smyd5"
                     /inference="alignment:Splign:2.1.0"
     exon            226..365
                     /gene="Smyd5"
                     /inference="alignment:Splign:2.1.0"
     exon            366..487
                     /gene="Smyd5"
                     /inference="alignment:Splign:2.1.0"
     exon            488..557
                     /gene="Smyd5"
                     /inference="alignment:Splign:2.1.0"
     exon            558..662
                     /gene="Smyd5"
                     /inference="alignment:Splign:2.1.0"
     exon            663..725
                     /gene="Smyd5"
                     /inference="alignment:Splign:2.1.0"
     exon            726..796
                     /gene="Smyd5"
                     /inference="alignment:Splign:2.1.0"
     exon            797..903
                     /gene="Smyd5"
                     /inference="alignment:Splign:2.1.0"
     exon            904..960
                     /gene="Smyd5"
                     /inference="alignment:Splign:2.1.0"
     exon            961..1055
                     /gene="Smyd5"
                     /inference="alignment:Splign:2.1.0"
     exon            1056..1126
                     /gene="Smyd5"
                     /inference="alignment:Splign:2.1.0"
     exon            1127..2192
                     /gene="Smyd5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aaggcggagg cgtgcccaag atggcggcct ccatgtgcga cgtgttctcc ttctgcgtgg
       61 gcgtggcagg cggtgcccgg ggctccgtgg aagtccgttt tgtgagcagc gccaagggaa
      121 agggactgtt tgccacacag ctgattcgga agggagagac catcttcatc gaaagaccgc
      181 tagtagcttc acagtttctc tggaatgcac tttatcggta ccgggcctgt gaccactgtc
      241 ttcgggcact ggagaaggca gaggagaatg cccagaggct gactgggaaa ccaggccagg
      301 ttctaccaca cccagagcta tgcagtgtgc gcaaggacct ccaccagaac tgcccccgct
      361 gccaggtgac gtactgcagt gcagagtgtc ggctggcagc tgcagagcag taccaccaga
      421 tcctgtgccc aggcccatcc caggatgacc cccggcaccc cctcaataag ctgcaggagg
      481 catggaggag tgttcactat cctcctgaga ctgcgagtat aatgctgatg gcccggatgg
      541 tagccacagt gaagcaggcc aaggacaagg accactgggt caggctcttc tcccatttct
      601 gcagcaagac agccaatgag gaggaggaaa ttgtccacaa actcctgggg gacaaattca
      661 agggccagct ggaacttctg cgtaggctct tcacagaggc cctttatgag gagaccctca
      721 gtcagtggtt cacaccagat ggattccggt ctctctttgc ccttgttggg accaacggtc
      781 aagggattgg aaccagttcc ctcagtcagt gggtacatgc ctgtgatgca ctggagctga
      841 agcctcagga acgggaacag ctagacacct tcattgacca gttgtacaag gacatcgagg
      901 cagcaaccgg agagttcctt aactgtgagg gatccggcct cttcgtgctt caaagctgct
      961 gcaaccacag ctgtgtcccc aatgcggaga cctccttccc agaaaacaac ttccttttac
     1021 acgtcactgc cctggaggat attgagccag gcgaggaaat ctgtatcagc tacttagact
     1081 gctgtcagcg ggagcgcagc cgccatagcc gccacaagat cctcagggag aactacttgt
     1141 tcgtctgttc ctgtcccaaa tgcctggcag aggctgatga ccctaacgtg acctcagaag
     1201 aggaggaaga ggaagatgag gaggaaggag agccagaaga tgcagaacta ggggatgaga
     1261 tgactgatgt ctgacgtcac cttgcctgga aggggccctg cccagaccct gctggaaagg
     1321 gggcctgtcc tccacaaatg tggatggaag gaccatcccc tcccccttgc acccactgcc
     1381 tgctttctcc cttctagcat tctgctggag ggtaggataa aggctggacc tgagccccct
     1441 caccagacct catgccctga gcactgctgc tgagctgcat cggccctgtg ccatcaccaa
     1501 gccttccaga actggcctcc cctgccatgc tccagtgtag ctgtgagact gaatcaagtc
     1561 tcaggcctca tagtgttctt cctctgggcc cctcagccca tactcaactc atgcatccac
     1621 cagaggcttg gcgcctgttg acaggctatt aatttgaggg tggcaacaaa atggccaatc
     1681 ttgagagcag attggtttcc ttgccagaaa gaggtgatat gaagccttac ctctctcttc
     1741 cttactgctc acttaccaca gctgctgctg aagtaatggc ccgccacttg ccagcaacag
     1801 gcaggaacaa gggagtaggc cttagaacaa cactgcaaaa gactctgcca ggggcgctgg
     1861 gctgttccca ctggacagtg gggaggtgga gattaacctg ttggccaaac tccagaattg
     1921 ctatgcctgt gttctgcctc tgaggctcag gcaaggggct agctccataa tgtgtggacg
     1981 atgcctgtct ttatcaggac agagaccacc atcctttctc agactaacaa tatggcagat
     2041 gacagactgc tccataattt aggataccca gtcttgcctg agaccagctg cagtggtcca
     2101 gcaagggtcc tttacaatct ccaaagagga gcaccagtct tccagaaacc tgacaggctg
     2161 ggcaggacac ttgaagagga gccagggctt tg
//
