LOCUS       NM_001190998            2438 bp    mRNA    linear   ROD 09-APR-2024
DEFINITION  Rattus norvegicus smoothelin-like 2 (Smtnl2), mRNA.
ACCESSION   NM_001190998 XM_001053796
VERSION     NM_001190998.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2438)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Jul 9, 2010 this sequence version replaced XM_001053796.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582424.817294.1,
                                           SRR26360181.296255.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-453               JAXUCZ010000010.1  57527598-57528050   c
            454-541             JAXUCZ010000010.1  57520428-57520515   c
            542-781             JAXUCZ010000010.1  57519528-57519767   c
            782-857             JAXUCZ010000010.1  57518914-57518989   c
            858-1037            JAXUCZ010000010.1  57517853-57518032   c
            1038-1155           JAXUCZ010000010.1  57516819-57516936   c
            1156-1307           JAXUCZ010000010.1  57516435-57516586   c
            1308-2438           JAXUCZ010000010.1  57506873-57508003   c
FEATURES             Location/Qualifiers
     source          1..2438
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q24"
     gene            1..2438
                     /gene="Smtnl2"
                     /note="smoothelin-like 2"
                     /db_xref="GeneID:679629"
                     /db_xref="RGD:1585960"
     exon            1..453
                     /gene="Smtnl2"
                     /inference="alignment:Splign:2.1.0"
     CDS             64..1434
                     /gene="Smtnl2"
                     /codon_start=1
                     /product="smoothelin-like protein 2"
                     /protein_id="NP_001177927.1"
                     /db_xref="GeneID:679629"
                     /db_xref="RGD:1585960"
                     /translation="MEPTPDAEEAHTVREALGRYEAALEGAVRALHEDMQGLQRGVER
                     RVAEALRLAGPLARTVAELQRDNQRLQAQLERLTRQVEALGLATGVSPAPGTPSPPPA
                     TTVTDRAPRLGTARFSSHATFSLSGRSPSMEHDEVSDLEARRTSNSCIMENGHQLDAG
                     SANGSSEVQASSAQESPRPRPVSLSLRLPHQPVTAVTRVSEKFSGETSASALSPTSAA
                     IVGGFTPSPSEAISPWTPSPTEKSSSFTRSLSGSGYGAVTAGKRKDSPPLVTPPQSPP
                     SSQPPAMTQAPRQGERRRELVRSQTLPRTSGAQARKALFEKWEQDTASKGKGETRAKL
                     KRSQSFGVASASSIKQILLEWCRSKTVGYQHVDLQNFSSSWSDGMAFCALVHSFFPDA
                     FDYNALSPTQRQKNFELAFTMAENLANCERLIEVEDMMVMGRKPDPMCVFTYVQSLYN
                     HLRRFE"
     exon            454..541
                     /gene="Smtnl2"
                     /inference="alignment:Splign:2.1.0"
     exon            542..781
                     /gene="Smtnl2"
                     /inference="alignment:Splign:2.1.0"
     exon            782..857
                     /gene="Smtnl2"
                     /inference="alignment:Splign:2.1.0"
     exon            858..1037
                     /gene="Smtnl2"
                     /inference="alignment:Splign:2.1.0"
     exon            1038..1155
                     /gene="Smtnl2"
                     /inference="alignment:Splign:2.1.0"
     exon            1156..1307
                     /gene="Smtnl2"
                     /inference="alignment:Splign:2.1.0"
     exon            1308..2438
                     /gene="Smtnl2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aagctgtagg tctctcgtct cccgtgttct gccggctgtc cgatctgtgc gctctgctcc
       61 gccatggagc caacccccga cgccgaggag gcgcacacgg tgcgcgaggc gctgggccgc
      121 tatgaagcgg cgctggaggg tgccgtgcgt gcgctgcacg aggacatgca ggggctgcag
      181 cgcggcgtgg agcggcgcgt ggccgaggcg ctgcgcctgg ctggcccctt ggctcgcact
      241 gtggccgagc tgcagcggga caaccagagg ttgcaggcgc agctcgaacg cttgacccgc
      301 caggtggagg cgctgggctt ggcgactggt gtgtcccctg cacccggcac gcctagtccg
      361 cctccagcga ccacggttac agaccgcgcc ccccgcctgg gcaccgcgcg cttctccagt
      421 catgctacat tctcgctgtc cggtcgaagc ccgagcatgg aacatgatga agtcagtgac
      481 ctcgaggcga gacgaacttc aaactcatgc atcatggaga atggacacca gctggatgca
      541 ggttcagcca acggatcctc tgaggtccaa gcctcatcag cccaggagtc ccctagacca
      601 cgccctgtga gcctctcctt gcggctgccc caccagccgg tcacagctgt cacccgagtc
      661 tctgagaaat tctctgggga gacctcagct tcagctctgt cacccacatc tgctgctatt
      721 gtggggggct tcaccccaag ccctagtgag gccatcagtc cttggactcc tagtcccact
      781 gagaaaagtt cctccttcac acggtctttg tctggctctg ggtatggagc agtgacagct
      841 ggcaaacgca aggacagccc tccactggtg accccaccac agtcaccccc atcctcacag
      901 cctccagcta tgactcaggc ccctcgccag ggagagcgtc gcagggaact ggtgaggtcg
      961 cagacgctgc ctcgtacttc aggggcgcag gctcggaagg cgctgtttga gaagtgggag
     1021 caggacacag caagcaaggg caaaggtgag accagggcca aactaaagag gtcgcagagt
     1081 ttcggtgtgg ccagtgccag cagcatcaag cagatcctgc tcgagtggtg ccgcagcaag
     1141 actgtgggct atcagcatgt ggacctgcag aatttctcct ccagctggag tgatgggatg
     1201 gccttctgtg ccctagtgca ctcattcttc cctgatgcct tcgactacaa tgccctgagt
     1261 cccacacaaa ggcagaagaa ctttgaactg gccttcacca tggctgagaa tctggccaac
     1321 tgtgagcgcc tcattgaagt ggaggatatg atggtgatgg gccgcaagcc ggaccccatg
     1381 tgcgttttca cctacgtgca gtcgctctac aaccacctgc gtcgctttga gtaaagcctg
     1441 gagtggccag gagaagagac tctgaggtcc ctcatgttcc cccatggcag cctgacccac
     1501 aggaggggag ctgcctctct ggtgtgagct gttatttgtt ctctgacatg tgaccacgtg
     1561 cccctcacac tcagttactg attaaaagta ttgatgaggc taagctgagc cccacagccc
     1621 ctcacagcca agggctggaa ggagaaggca aaactcgaga gtcaaagaaa ttggtgctaa
     1681 gtaatgatct tcctatgggg agtgctcatg gtttcccctc tggtgaattt gatatattgg
     1741 ctggacaggg ttccattgat tatcaagttt tctttcttcc tttttttttt ttcctatcaa
     1801 aataccagag gtgtgttttg ttttgtttta aacttcctca cactcttgtt ggtccctttc
     1861 tcctctccct ctgggccact gccaggaaac agattagtca gccccaggac ctgggtagca
     1921 gattatcttc ctatcatctc ttctctgtgg ggaggtggca aggtttccac ctagacccag
     1981 aggggcttct ggtactcaca ggagacccca caagtgtcta gctaaggaat ggttactcgg
     2041 gtgcccaggg aggaaggata gataggtcct gagcaatgag agattcccat ttgctccaag
     2101 tatttataaa aaaggattgc atctatgcca ctgacctgtt tgtacacaaa agatgtgtca
     2161 gtctttgctt gggtttgtta tttctgtttg ggaaacgggg aggagggttg ggcagtaaga
     2221 gattgcatag gtttaaacag aggtctactg aaatcatacc ttagttgttt atgtatttaa
     2281 aaccactggc ctgggaggct gaaaatgaca tttactgtct accaatgtac ttgtccctca
     2341 gccatttcaa tgttgaagga ttgtgaacgg aaaatgtacc ccctgccgat ctgtccctta
     2401 gatattggca aatatattat gataaaaagt ggcccaaa
//
