LOCUS       NM_001035234            2005 bp    mRNA    linear   ROD 03-JUN-2024
DEFINITION  Rattus norvegicus survival motor neuron domain containing 1
            (Smndc1), transcript variant 1, mRNA.
ACCESSION   NM_001035234
VERSION     NM_001035234.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2005)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            EV778425.1, BC098697.1, CV106705.1 and CB726049.1.
            
            On Jun 6, 2012 this sequence version replaced NM_001035234.1.
            
            Transcript Variant: This variant (1) represents the predominant
            transcript. Variants 1 and 2 both encode the same protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: EV771001.1, DN933061.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-651               EV778425.1         1-651
            652-1500            BC098697.1         631-1479
            1501-1677           CV106705.1         1-177               c
            1678-2005           CB726049.1         39-366              c
FEATURES             Location/Qualifiers
     source          1..2005
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q55"
     gene            1..2005
                     /gene="Smndc1"
                     /note="survival motor neuron domain containing 1"
                     /db_xref="GeneID:287768"
                     /db_xref="RGD:1309151"
     exon            1..191
                     /gene="Smndc1"
                     /inference="alignment:Splign:2.1.0"
     CDS             192..908
                     /gene="Smndc1"
                     /note="survival motor neuron domain-containing protein 1"
                     /codon_start=1
                     /product="survival of motor neuron-related-splicing factor
                     30"
                     /protein_id="NP_001030311.1"
                     /db_xref="GeneID:287768"
                     /db_xref="RGD:1309151"
                     /translation="MSEDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIE
                     LTKDLLSTQPSETLTSSDSFASTQPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEENG
                     TAAITFAVYGNAEVTPLLNLKPVEEGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKK
                     AQRIKELEQEREDQKVKWQQFNNRAYSKNKKGQVKRSIFASPESVTGKVGVGTCGIAD
                     KPMTQYQDTSKYNVRHLMPQ"
     exon            192..311
                     /gene="Smndc1"
                     /inference="alignment:Splign:2.1.0"
     exon            312..454
                     /gene="Smndc1"
                     /inference="alignment:Splign:2.1.0"
     exon            455..616
                     /gene="Smndc1"
                     /inference="alignment:Splign:2.1.0"
     exon            617..770
                     /gene="Smndc1"
                     /inference="alignment:Splign:2.1.0"
     exon            771..2005
                     /gene="Smndc1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gatctcgctc gccttgtctt ttcttcctgc ctgagcccgg cttttctccc ctcccccctc
       61 gccggcggat tttttccttt tccgaccgaa tctcgtcgtg gtggaaattt cccctgctgt
      121 agctgtccct gccgccgctc ggctcgcttc cccgacccct gcccgctgtc ccatccccag
      181 tcccacccaa gatgtcagag gatctagcaa aacagttggc cagctacaaa gctcaactcc
      241 agcaagtaga agctgctcta tcgggaaatg gagaaaatga agatctgctg aaactgaaga
      301 aggatttgca agaagtcata gaactgacca aagaccttct gtcaactcag ccttcggaaa
      361 ctctcacaag ttcagacagc tttgcttcta ctcagcccac tcattcatgg aaagtagggg
      421 acaagtgcat ggccgtctgg agtgaagatg gacagtgtta tgaggcggag atcgaggaga
      481 tcgatgaaga gaacggcacc gctgcgatca ccttcgctgt ctatggcaat gccgaagtga
      541 ctccattgtt gaacctcaag cctgtagagg aaggaaggaa agcaaaagag gacagcggca
      601 acaaacccat gtcaaaaaaa gaaatgattg cccagcagcg tgaatataaa aagaaaaaag
      661 ctttgaaaaa agcacagaga ataaaagagc ttgagcagga gcgagaggac cagaaggtga
      721 aatggcagca gttcaacaac agggcgtact cgaaaaacaa gaaaggccag gtaaagagga
      781 gtatttttgc ttcgccagaa agtgtaacgg gcaaagtcgg agtaggaact tgtggaattg
      841 ctgacaagcc catgacacag tatcaagata catccaaata caatgtcagg catttgatgc
      901 ctcagtagtg agaaactgtt ggatttcatc tccgcagggc tttacattta cctttttatc
      961 cttatatttt tctaaaggta aattatttgt tagatgagta agggagatcc gttgttgtca
     1021 ttgtttggct ttggtaggat gaaacttgaa gacatttgat aactgctacc atgtaacttt
     1081 tcattgctac tcaccacagc ttcttcagta tgttgaacaa ggcaactttt ctagctaagt
     1141 gctgcataag tcggcacgta gatgacttag gaacgtcagg ccacttaact gatgttgtgt
     1201 ggacagtttg taagtcctaa cttgggattt tcagatgctt tgcacttgat atattccaac
     1261 agtgcagtgg aagggacatc aaggcaaaac gccagcctgc tgaagagagc ggcttccgtt
     1321 ttacaacctg gcactgtcca gacgagcccg agtataggtt aatttataaa tggcaaagtt
     1381 tattttgagg tttttttcct tgaattgttt cctgggacta ttaggtcacc tctacaattg
     1441 actcaccttg tattttttgt cattgagttt gaattttata ttaaaaaacc aaacaaacca
     1501 tgtttaggat gtgctcccct tctctgttta tttggtgttt tcctttgttg acttcacttg
     1561 tggtagtgct acccgttttg ggatgtgtaa tgtttatatg ggaagacaaa gctgatgtac
     1621 agccctgtat acagtgtaga tactattttt gtaaaaaaca gaacaaaacc aaaaaaaaaa
     1681 aaaaaaaaaa caaatccaag gctaaattaa tgaacaagag tactgaatgt cttcatgatt
     1741 acattttcct gtatttcttg tgcattaatc tgaccataac ttccctgtat attatgttca
     1801 tgtagctgag tttgtaattt ttattaacga gatcaagttg ccagcatttg ttggcataag
     1861 tgaagcacca cagctatccc aagttgagtt taaacaaaac aaaggtaggg aaaaggcctt
     1921 cctgttaatt ggaagaagat actttttaga gtgtgtgtta atttcagttt tgtatgttta
     1981 actttaataa ataaagtctg tacaa
//
