LOCUS       XM_039109051             991 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus small lysine-rich protein 1 (Smkr1),
            mRNA.
ACCESSION   XM_039109051
VERSION     XM_039109051.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039109051.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 20% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..991
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..991
                     /gene="Smkr1"
                     /note="small lysine-rich protein 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     ESTs, 1 Protein, and 90% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:103692109"
                     /db_xref="RGD:9298384"
     CDS             1..462
                     /gene="Smkr1"
                     /codon_start=1
                     /product="small lysine-rich protein 1"
                     /protein_id="XP_038964979.1"
                     /db_xref="GeneID:103692109"
                     /db_xref="RGD:9298384"
                     /translation="MASSFKTDGNELAKRGCTPLVIHGGDQQQVNSARFGRVRALDSG
                     LSECLGAEPREWGEANLVYQHLRLRTPRRRSIGGAATAGAGGNTRAGKRKKRKGRGKA
                     GKKQKQKKPEVDILSPAAMLNLYYIAHNVADCLYLRGFPWPGAPKGKRGKK"
ORIGIN      
        1 atggcttcat cattcaagac cgatggaaac gagttggcga agagagggtg tacaccgttg
       61 gttatacacg gtggagacca gcaacaggta aacagtgcga ggttcggccg cgttagagcg
      121 ctcgacagcg ggctgtctga gtgcctcggg gccgagcccc gggagtgggg tgaggcaaac
      181 cttgtctacc agcatctgcg cctccgcaca ccgcgaaggc gctcaattgg aggtgcggcc
      241 acggccgggg caggcggcaa tacgcgggca ggtaaaagga agaaaagaaa aggccggggc
      301 aaggccggga agaagcagaa gcagaagaag ccggaagtag acatcctcag cccggcagcc
      361 atgttgaacc tatactacat cgctcacaat gttgccgact gcctgtatct gcgtggcttc
      421 ccttggccag gcgctcccaa agggaaaagg gggaaaaaat aagatttagg tggtagaatt
      481 caaagcatgc cttggtctca aagaacagaa agtaggagaa tgcatttagg gtacctcaag
      541 gactgcgggc aagcgggctc taacagccaa gtagaaacat gtagccactg tacttttctg
      601 tggtaaataa tgacaaacat ttttatttcc acagctgagc caggcaatag gtaagccact
      661 ttgttttttc agaagtaacc aggaaaacca aacccaagta gttcataaag gctaccctgg
      721 cattggtagt gtttttttta aatattatac tcataaatct agactgaatt aaaccttgtt
      781 ctcagaaggc agctccaggt tgcatgagtc gttttctttt gtgagagctg gctcagagaa
      841 gcagagagct caggcctaac ttgtaagcac gttttctgct gtggtttggt ttggggtctc
      901 tctctctctc tctctctctc tctctctctc tctctctctc tctcaacgat gggaatgagc
      961 ctagggcctc tgctcagaaa gagctctgcc a
//
